Gvermi6118.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male
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Overview
Homology
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A2V3J0T1_9FLOR (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T1_9FLOR) HSP 1 Score: 325 bits (834), Expect = 3.810e-111 Identity = 159/212 (75.00%), Postives = 183/212 (86.32%), Query Frame = 0
Query: 1 MGAKCVYDVSTEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVCTTPDKKRPPIELVTLPDVTNRQYVISPPLITEAEPALTVLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFNEKDLVPFSKRTEALLFAKLLRS 212
MGAKCVYD+STEG S AMV+REIIRRI+AHTGR+ SWQV+VS T PDKKRP IE+V+LPD+ +R ++ISPPL+TEA+P L LLRR+S Y+PK R+ARG +FDFVDF VRVGMSFDRHG ATGVVV+IEYRPCSY DCE LIAELMERIAAPLVPPP AN DPG+S AATT+YNY R+ VDA KFN+KDL+PFS RTEALLFAKLLR+
Sbjct: 1 MGAKCVYDISTEGKSPAMVEREIIRRIEAHTGRRLTSWQVTVSFHTNPDKKRPTIEIVSLPDIKDRVFLISPPLVTEAQPTLVPLLRRISNYSPKYNRSARGLQFDFVDFLVRVGMSFDRHGGATGVVVQIEYRPCSYTADCERLIAELMERIAAPLVPPPQANHDPGISAAATTSYNYTRVDVDATKFNDKDLMPFSHRTEALLFAKLLRA 212
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A7S3A9S3_9RHOD (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9S3_9RHOD) HSP 1 Score: 146 bits (369), Expect = 1.580e-40 Identity = 81/211 (38.39%), Postives = 122/211 (57.82%), Query Frame = 0
Query: 1 MGAKCVYDVS-TEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVCTTPDKKRPPIELVTLPDVTNRQYVISPPLITEAEPALTVLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFNEKDLVPFSKRTEALLFAKLL 210
MGAKC++ + E ++A V +E+ RR++AHTGR+ G WQVS + RPP+ + T + ++Y ++ E + L+ LL ++ TP + +G E+D VDF+VRVGM F++ G T VVEI Y PCS + +C LI ELM++IAAPLV P + D + AA T Y + + D +K PFS R A+L++ +L
Sbjct: 1 MGAKCLFRIQINEYYNSAQVHKELQRRVEAHTGRRVGPWQVSAQQYGSKGNVRPPVVVFTTSEEPEKRYFLTGKHAIETDDGLSALLSKIPALTPTQSFMVKGIEYDLVDFTVRVGMVFEKSGP-TSNVVEIGYLPCSIVDNCVGLITELMDKIAAPLVAPQDSRQDSQANAAAETNYEFRLVPDDFQKVEGLANTPFSMRHTAMLYSAML 210
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A7S1ESA9_9RHOD (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESA9_9RHOD) HSP 1 Score: 80.9 bits (198), Expect = 7.900e-15 Identity = 61/210 (29.05%), Postives = 101/210 (48.10%), Query Frame = 0
Query: 1 MGAKCVYDVSTEGTSAAMVQREIIRRIKAHTGRQ-SGSWQVS-------VSVCTT----PDKKRPPIEL------------VTLPDVTNRQYVIS------PPLITEAEPALTVLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYN 180
MG +CVY +S E A +++EI+RRI+AH+GR+ SG+ + S +V T P PI +TL + + ++ + + A + LL R+S + K ++ G +D DF++RV + D+ A GVV+++EY C + +C L+ EL+ R+ APLV P N+ G+A + N
Sbjct: 1 MGVRCVYRLSVESYDATALEKEILRRIEAHSGRRKSGTCKASFTQFAFGTTVATQSQLPPSTDNTPISSTLKTGILQGLYELTLSEAPRQIFLFALHPTARAVQLLHASSEMHALLPRISNVSEKHKKSTFGMLYDLADFTLRVCLLMDK-SKAMGVVLDVEYGACDSLAECFELLDELVSRLCAPLVAAPPLNNGTEPIGSAISNLELN 209
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A1Y1YBK9_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YBK9_9FUNG) HSP 1 Score: 55.5 bits (132), Expect = 5.770e-6 Identity = 53/200 (26.50%), Postives = 89/200 (44.50%), Query Frame = 0
Query: 1 MGAKCV--YDVSTEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVC--TTPDKKRPPIELVTLPDVTNRQYVIS-----PPLITEAEPALTVLLRRVST-YTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFN 190
MG CV + + S M+Q I+ K + G+ SG W +S V T P K +L+ L V + Y S +I EA+ L ++ ++ + + G FD DF +R G + S G+++EIEY+PCS T C + +E ++ + +PP G + T Y Y + + ++ F+
Sbjct: 1 MGVTCVLRWTDANGAQSLNMLQERIV---KVYHGKISGRWNLSCKVYRDTNPINKMGTGKLLYL--VYHSSYPSSVFSMIDGVIVEADRELDFIVNKLKNIWVTRQNLQVEGYSFDIGDFVLRAG-NIMVGSSYKGMMIEIEYKPCSIPTQCNDIFSEFLQNV----IPP-------GAKYSLETDYKYESVGLSSETFS 183
BLAST of Gvermi6118.t1 vs. uniprot
Match: UPI001AEA813D (mediator of RNA polymerase II transcription subunit 20-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AEA813D) HSP 1 Score: 55.5 bits (132), Expect = 8.300e-6 Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0
Query: 84 VLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVP 159
+LL+ + Y+ K ++G F+ DF V++G+ GS G+++E+EY PCS+I+ C SL+ E M+ +VP
Sbjct: 91 LLLKLSNIYSKKSKIESKGHRFEIGDFLVKLGV-VSSAGSFKGILIEVEYIPCSFISSCWSLMVEFMQGFLGSIVP 165 The following BLAST results are available for this feature:
BLAST of Gvermi6118.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 5
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gvermi6118.t1 ID=Gvermi6118.t1|Name=Gvermi6118.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=213bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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