Gvermi6024.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6024.t1
Unique NameGvermi6024.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length154
Homology
BLAST of Gvermi6024.t1 vs. uniprot
Match: R7QK48_CHOCR (Eukaryotic translation initiation factor 5A n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK48_CHOCR)

HSP 1 Score: 272 bits (696), Expect = 4.980e-92
Identity = 133/153 (86.93%), Postives = 148/153 (96.73%), Query Frame = 0
Query:    1 MSEHDSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEVQ 153
            MSEHDSGSSGASNT+PVQAGALKKGSHVVIKGFPCKI++YSTSKTGKHGHAKANIVG+DIFTG+KYEDISPSSHNMMSPVV+RKD+QL+DIDEEG+VT+MDDKN+TRSDLRLD E D+IHKK KEDF+EGKDL+LTVLSAL  EKVIAVKE+Q
Sbjct:    1 MSEHDSGSSGASNTVPVQAGALKKGSHVVIKGFPCKIIDYSTSKTGKHGHAKANIVGIDIFTGKKYEDISPSSHNMMSPVVTRKDFQLIDIDEEGYVTIMDDKNETRSDLRLDFENDDIHKKAKEDFEEGKDLLLTVLSALDTEKVIAVKELQ 153          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A2V3IEI9_9FLOR (Eukaryotic translation initiation factor 5A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEI9_9FLOR)

HSP 1 Score: 259 bits (663), Expect = 5.340e-87
Identity = 127/153 (83.01%), Postives = 144/153 (94.12%), Query Frame = 0
Query:    1 MSEHDSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEVQ 153
            MSEHDSGSSGAS +IPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSP+V+RKD+QL+DIDEEGFVTLMDDK++TRSDLR+  E ++IH KCKE+FD+ K L++TVLSA+G EK+IA KE+Q
Sbjct:    1 MSEHDSGSSGASQSIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPIVNRKDFQLIDIDEEGFVTLMDDKHETRSDLRIFPETEDIHAKCKEEFDDDKSLLVTVLSAMGTEKIIAYKELQ 153          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A1X6PCW2_PORUM (Eukaryotic translation initiation factor 5A n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCW2_PORUM)

HSP 1 Score: 235 bits (599), Expect = 2.930e-77
Identity = 111/149 (74.50%), Postives = 136/149 (91.28%), Query Frame = 0
Query:    5 DSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEVQ 153
            D+  SGAS+ IP+QAGALKKGSHVV+KGFPCKIV+YSTSKTGKHGHAKANI G+DIFT RKYEDISP+SHNM+ P+V+RKDYQL+DID+E ++TLMDDKNDTR+DL+LD++ D++HKK KE+FD GKDLV+TVL+A+  EKVIA KE+Q
Sbjct:    4 DASGSGASDCIPIQAGALKKGSHVVLKGFPCKIVDYSTSKTGKHGHAKANITGIDIFTQRKYEDISPTSHNMLQPLVNRKDYQLVDIDDEAYLTLMDDKNDTRADLKLDLDGDDVHKKIKEEFDNGKDLVVTVLAAMKTEKVIAWKELQ 152          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A7S0G3H6_9RHOD (Eukaryotic translation initiation factor 5A n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3H6_9RHOD)

HSP 1 Score: 229 bits (584), Expect = 6.450e-75
Identity = 108/145 (74.48%), Postives = 133/145 (91.72%), Query Frame = 0
Query:    7 GSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDK-NDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVK 150
            G SG+S+TIPVQAGALKKG+HVVIKGFPCKIV+YSTSKTGKHGHAKANI G+DIFTG+KYEDISP+SHNM+ P+VSR+D+QL+DID+EGF+T+MDDK N+TRSDLR++ + +E+HKK KE+FDEGKDL +TVLSA+  EKV+  K
Sbjct:    9 GDSGSSDTIPVQAGALKKGAHVVIKGFPCKIVDYSTSKTGKHGHAKANITGIDIFTGKKYEDISPTSHNMLQPIVSRRDFQLIDIDDEGFITVMDDKTNETRSDLRIETDKEEVHKKLKEEFDEGKDLAVTVLSAMKIEKVVTYK 153          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A5J4YTQ6_PORPP (Eukaryotic translation initiation factor 5A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTQ6_PORPP)

HSP 1 Score: 227 bits (578), Expect = 6.050e-74
Identity = 109/146 (74.66%), Postives = 129/146 (88.36%), Query Frame = 0
Query:    7 GSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEV 152
            G SGAS+T+P+QAGALKKGS VV+KGFPCKIV+YSTSKTGKHGHAKANI G+DIFT +KYED+ P+SHNM  P+V+RKDYQL+D+DEE FV+LMDDKN+TR DLRLD E D++HKK  EDF   KDLV+TVLSA+G EK+IAVKEV
Sbjct:   14 GGSGASDTVPIQAGALKKGSFVVLKGFPCKIVDYSTSKTGKHGHAKANITGIDIFTNKKYEDVCPTSHNMQQPIVNRKDYQLIDVDEENFVSLMDDKNETREDLRLD-EQDDVHKKISEDFKAEKDLVVTVLSAMGTEKIIAVKEV 158          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A7S1T553_9RHOD (Eukaryotic translation initiation factor 5A n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T553_9RHOD)

HSP 1 Score: 216 bits (551), Expect = 6.410e-70
Identity = 101/150 (67.33%), Postives = 133/150 (88.67%), Query Frame = 0
Query:    3 EHDSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEV 152
            EH +G SGAS+T+P+QAGALKK ++ V+KGFPCKIV+YSTSKTGKHGHAKANI G+DIF+G+KYED+ P+SHNMM P+V+R D QL+DIDEEGFV+LM+DK++ RSDL+LD ++DE H+K +  FDEGK+L++TVL A+G EK+IA+KE+
Sbjct:    4 EHAAGDSGASDTVPIQAGALKKNAYCVLKGFPCKIVDYSTSKTGKHGHAKANITGIDIFSGKKYEDVCPTSHNMMQPIVTRNDLQLVDIDEEGFVSLMNDKSEMRSDLKLD-DSDETHQKIRTAFDEGKELMVTVLGAMGTEKIIALKEI 152          
BLAST of Gvermi6024.t1 vs. uniprot
Match: M2Y544_GALSU (Eukaryotic translation initiation factor 5A n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y544_GALSU)

HSP 1 Score: 209 bits (533), Expect = 3.650e-67
Identity = 95/142 (66.90%), Postives = 128/142 (90.14%), Query Frame = 0
Query:   10 GASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKE 151
            GA+   P+QAG++KK S VV+KGFPCK+V+ STSKTGKHGHAKANIVGVDIFTG+KYE++ P+SHN++ PVV+RKDYQL+DI+++GFV LMD+ N+TRSDL+LD+E+D++HKK K++F+EGK+L++TVLSA+  EK+IA KE
Sbjct:   11 GAAEATPIQAGSVKKNSFVVLKGFPCKVVDISTSKTGKHGHAKANIVGVDIFTGKKYEEMCPTSHNILQPVVNRKDYQLVDIEDDGFVVLMDENNETRSDLKLDLESDDVHKKIKQEFNEGKELLVTVLSAMKTEKIIASKE 152          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A7S0MKK1_9CRYP (Eukaryotic translation initiation factor 5A n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MKK1_9CRYP)

HSP 1 Score: 206 bits (523), Expect = 1.300e-65
Identity = 95/150 (63.33%), Postives = 126/150 (84.00%), Query Frame = 0
Query:    3 EHDSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEV 152
            + +SG +GAS TIPVQAG++KKGSH+V+KG PCK++E STSKTGKHGHAKA+I G+DIFTG+KY+DISP+SHNMM PVV+RK+YQL++I E+ F+TLMDD+ + R DL +D+  D+ HKK K DFD  K+L+LTVL  + KEK+IA +E+
Sbjct:    6 DFNSGDAGASETIPVQAGSVKKGSHIVLKGCPCKVIEVSTSKTGKHGHAKASITGIDIFTGKKYQDISPTSHNMMQPVVNRKEYQLVEIAEDSFLTLMDDEGNIREDLSIDINNDDTHKKIKGDFDSNKNLMLTVLKCMQKEKIIASREI 155          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A0A7J7IKU8_9RHOD (Eukaryotic translation initiation factor 5A n=2 Tax=Cyanidiaceae TaxID=265316 RepID=A0A7J7IKU8_9RHOD)

HSP 1 Score: 193 bits (491), Expect = 1.060e-60
Identity = 93/157 (59.24%), Postives = 122/157 (77.71%), Query Frame = 0
Query:    1 MSEHD------SGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKE 151
            M+EH       +G +GAS+T+P+QAG++KKG ++V+KG PCK V+ STSKTGKHGHAKANIVG+DIFTG+KYED++P+SH M  PVV R +YQL+DID E F +LMDDK +TR DL+LD + D +H K KEDFD GK L + VL A+ +EK++  KE
Sbjct:    1 MAEHHDLEVLATGDAGASDTVPIQAGSVKKGVYIVLKGQPCKCVDVSTSKTGKHGHAKANIVGLDIFTGKKYEDVAPTSHTMYQPVVVRSEYQLIDIDAENFCSLMDDKGETREDLKLDPDNDPVHAKIKEDFDAGKHLTVVVLKAMKQEKIMQSKE 157          
BLAST of Gvermi6024.t1 vs. uniprot
Match: A9BK60_HEMAN (Eukaryotic translation initiation factor 5A n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BK60_HEMAN)

HSP 1 Score: 192 bits (487), Expect = 3.900e-60
Identity = 92/151 (60.93%), Postives = 124/151 (82.12%), Query Frame = 0
Query:    3 EHDSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGHAKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLMDDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVKEVQ 153
            + +SG +GAS TIP+QAG++KKG HVVIKG PCK++E STSKTGKHGHAKA+I G+DIFTG+KY+DISP+SHN+M P+V+RKDYQLL+I E+GF++LMD++   R DL    + D I++K KEDF   K+L +TVL ++ KEK+I+ KEV+
Sbjct:    6 DFNSGDAGASETIPIQAGSVKKGIHVVIKGNPCKVIEISTSKTGKHGHAKASITGIDIFTGKKYQDISPTSHNIMQPIVTRKDYQLLEIAEDGFLSLMDEEGQIREDLCFGNDNDTIYEKIKEDFFLNKNLNVTVLKSMQKEKIISYKEVE 156          
The following BLAST results are available for this feature:
BLAST of Gvermi6024.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QK48_CHOCR4.980e-9286.93Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A2V3IEI9_9FLOR5.340e-8783.01Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A1X6PCW2_PORUM2.930e-7774.50Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7S0G3H6_9RHOD6.450e-7574.48Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A5J4YTQ6_PORPP6.050e-7474.66Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7S1T553_9RHOD6.410e-7067.33Eukaryotic translation initiation factor 5A n=1 Ta... [more]
M2Y544_GALSU3.650e-6766.90Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7S0MKK1_9CRYP1.300e-6563.33Eukaryotic translation initiation factor 5A n=1 Ta... [more]
A0A7J7IKU8_9RHOD1.060e-6059.24Eukaryotic translation initiation factor 5A n=2 Ta... [more]
A9BK60_HEMAN3.900e-6060.93Eukaryotic translation initiation factor 5A n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 80..150
e-value: 1.9E-25
score: 100.6
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 80..150
e-value: 7.5E-23
score: 80.4
IPR001884Translation elongation factor IF5A-likePIRSFPIRSF003025Transl_init_eIF5Acoord: 1..153
e-value: 1.8E-61
score: 203.8
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 12..150
e-value: 3.0E-39
score: 131.8
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 5..152
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..79
e-value: 5.8E-37
score: 127.4
NoneNo IPR availableGENE3D2.40.50.140coord: 81..152
e-value: 2.6E-24
score: 87.1
NoneNo IPR availableCDDcd04468S1_eIF5Acoord: 81..151
e-value: 1.79448E-26
score: 92.9856
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 45..52
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 81..152
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 10..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1813270..1814161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6024.t1Gvermi6024.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1813270..1814161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6024.t1 ID=Gvermi6024.t1|Name=Gvermi6024.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=154bp
MSEHDSGSSGASNTIPVQAGALKKGSHVVIKGFPCKIVEYSTSKTGKHGH
AKANIVGVDIFTGRKYEDISPSSHNMMSPVVSRKDYQLLDIDEEGFVTLM
DDKNDTRSDLRLDVEADEIHKKCKEDFDEGKDLVLTVLSALGKEKVIAVK
EVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020189Transl_elong_IF5A_C
IPR001884IF5A-like
IPR014722Rib_L2_dom2
IPR019769Trans_elong_IF5A_hypusine_site
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf