Gvermi8742.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8742.t1
Unique NameGvermi8742.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1634contigScGOVlb_1634:168..737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8742Gvermi8742Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1634 168..737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8742.t1Gvermi8742.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1634 168..737 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8742.t1.start1Gvermi8742.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1634 168..170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8742.t1.CDS1Gvermi8742.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1634 168..593 +
Gvermi8742.t1.CDS2Gvermi8742.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1634 720..737 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8742.t1.exon1Gvermi8742.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1634 168..593 +
Gvermi8742.t1.exon2Gvermi8742.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1634 720..737 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8742.t1.intron1Gvermi8742.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1634 594..719 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8742.t1.stop1Gvermi8742.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1634 735..737 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8742.t1 ID=Gvermi8742.t1|Name=Gvermi8742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=148bp
MSESNNHTTLVPTNDSSASQRRSTRTPKPTEKAVVTVATTETKALKAPTV
DTTMAEQDSNKAKTKKTKKKSSTKPTKSIKPTKLTTSANDSQNQELLLAE
LARLKKENMELKRTCTQQDAALEKAKRKSAQQGTALEKATKKRWFAC*
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spliced messenger RNA

>Gvermi8742.t1 ID=Gvermi8742.t1|Name=Gvermi8742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_1634:168..737+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAAAGCAACAACCATACCACTCTGGTACCTACGAATGACTCCTC
CGCTAGTCAACGTCGTTCTACGCGCACCCCAAAGCCAACGGAAAAAGCTG
TCGTTACGGTGGCCACCACGGAAACGAAAGCTCTCAAGGCACCCACGGTT
GACACTACAATGgctgaacaggattccaacaaggccaagaccaagaagac
caaaaagaagagctccaccaagcccaccaagtccattaAGCCCACCAAGC
TCACCACGTCCGCCAATGACTCCCAAAACCAAGAGTTGCTGCTTGCCGAG
CTCGCCCGTCTCAAGAAAGAGAATATGGAATTAAAGCGCACCTGCACCCA
ACAGGATGCGGCTTTGGAAAAGGCCAAGCGCAAGAGTGCCCAACAGGGGA
CAGCTTTGGAAAAAGCCACCAAAAAGCGGTGGTTTGCTTGTTAG
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protein sequence of Gvermi8742.t1

>Gvermi8742.t1 ID=Gvermi8742.t1|Name=Gvermi8742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MSESNNHTTLVPTNDSSASQRRSTRTPKPTEKAVVTVATTETKALKAPTV
DTTMAEQDSNKAKTKKTKKKSSTKPTKSIKPTKLTTSANDSQNQELLLAE
LARLKKENMELKRTCTQQDAALEKAKRKSAQQGTALEKATKKRWFAC*
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mRNA from alignment at ScGOVlb_1634:168..737+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8742.t1 ID=Gvermi8742.t1|Name=Gvermi8742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=570bp|location=Sequence derived from alignment at ScGOVlb_1634:168..737+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGAAAGCAACAACCATACCACTCTGGTACCTACGAATGACTCCTC
CGCTAGTCAACGTCGTTCTACGCGCACCCCAAAGCCAACGGAAAAAGCTG
TCGTTACGGTGGCCACCACGGAAACGAAAGCTCTCAAGGCACCCACGGTT
GACACTACAATGgctgaacaggattccaacaaggccaagaccaagaagac
caaaaagaagagctccaccaagcccaccaagtccattaAGCCCACCAAGC
TCACCACGTCCGCCAATGACTCCCAAAACCAAGAGTTGCTGCTTGCCGAG
CTCGCCCGTCTCAAGAAAGAGAATATGGAATTAAAGCGCACCTGCACCCA
ACAGGATGCGGCTTTGGAAAAGGCCAAGCGCAAGAGTGCCCAACAGGGGA
CAGCTTTGGAAAAAGCCACCAAAAAGGTTCGTAGCAGTGAAGAGAAGACC
AAGAACCTTGTCTTGGAGCGCAAGCGGCGGCGCATacacacgcaacgacg
cacgcacgcacgcacgcacTCGCTGGGATTCGCTATTATGTTTGCGCGCT
AGCGGTGGTTTGCTTGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1634:168..737+

>Gvermi8742.t1 ID=Gvermi8742.t1|Name=Gvermi8742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=444bp|location=Sequence derived from alignment at ScGOVlb_1634:168..737+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGAAAGCAACAACCATACCACTCTGGTACCTACGAATGACTCCTC
CGCTAGTCAACGTCGTTCTACGCGCACCCCAAAGCCAACGGAAAAAGCTG
TCGTTACGGTGGCCACCACGGAAACGAAAGCTCTCAAGGCACCCACGGTT
GACACTACAATGgctgaacaggattccaacaaggccaagaccaagaagac
caaaaagaagagctccaccaagcccaccaagtccattaAGCCCACCAAGC
TCACCACGTCCGCCAATGACTCCCAAAACCAAGAGTTGCTGCTTGCCGAG
CTCGCCCGTCTCAAGAAAGAGAATATGGAATTAAAGCGCACCTGCACCCA
ACAGGATGCGGCTTTGGAAAAGGCCAAGCGCAAGAGTGCCCAACAGGGGA
CAGCTTTGGAAAAAGCCACCAAAAAGCGGTGGTTTGCTTGTTAG
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