Gvermi1863.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1863.t1
Unique Name	Gvermi1863.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	670

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1622	contig	ScGOVlb_1622:416497..418506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1313172.YM304_00980
PFAMs	Beta_propel
Max annot lvl	201174\|Actinobacteria
Evalue	1.75e-121
EggNOG OGs	COG1948@1\|root,COG4880@2\|Bacteria,2I8JU@201174\|Actinobacteria
Description	Beta propeller domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1863	Gvermi1863	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1622 416497..418506 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1863.t1.start1	Gvermi1863.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1622 416497..416499 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1863.t1.CDS1	Gvermi1863.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 416497..418506 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1863.t1.exon1	Gvermi1863.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 416497..418506 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1863.t1.stop1	Gvermi1863.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1622 418504..418506 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1863.t1	Gvermi1863.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1622 416497..418506 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1622:416497..418506+
coding sequence from alignment at ScGOVlb_1622:416497..418506+

mRNA sequence

>Gvermi1863.t1 ID=Gvermi1863.t1|Name=Gvermi1863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=670bp
MKLFSKLHTAVLAAVLLNFLPSVLAVSLNRYNSCSNLVSYFKNNALSRVG
AYGLSDSRNYGTFRPSLYCGPFRGPGPILLADSGFAANGVAEASAPVAAT
APLAGSAGTDSASKAQDPVAGVDFSETNVQVEGVDEPDIIKTDGTRVFVI
RGNKFFVLKVTDGGINGRVTGELTLPSYAREMLIEGDHLLVIGQTYGTIY
PTPRLVSSGFFFDQSLTTVYQIKVTNGIPKLIATLRMEGRYLNSREVNGV
ARIVMLYRPHLRFKYPSCVIPYAKAEAHNRDIIQKSTERDWYPSYSLKVE
GRGGETKNLISSCSNVYIPKIFPGFELLTVVTLPVSGNLSPTGSVSIVSE
GDEVYATASSLYVTTTEYRWDFFGLENSLRSGREFKTSIHKFSLNNYGAK
YVASGEVSGSVLNQFSMHEYNQIFFIATTDGAPWWGARDESSSKVTSFRT
NGYSKMLMKLGEVGNLGLGERIFAVRYVKDTAYVVTFRQIDPLYIIDLSR
PWWLRVTGELKIPGFSSYLHPISAGRILGVGQDATPEGRTTGAKVTLFDV
SDKKNPMELSSWTLPGSSTSAQWDHRAFLYWAPESVAVLPVSAYFSSNRF
IGSVVLEVSESNIQERGRITHETLSSNRYTPSIERNLVLGGEHLWSLSSK
QIQVNNIKDLSKESATTLG*

spliced messenger RNA

>Gvermi1863.t1 ID=Gvermi1863.t1|Name=Gvermi1863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at ScGOVlb_1622:416497..418506+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTGTTCAGCAAACTTCACACCGCCGTTCTGGCGGCTGTGCTTCT
TAATTTCTTACCCAGCGTGTTAGCCGTTTCTCTGAATCGTTACAACAGCT
GCTCGAACCTCGTGAGCTACTTCAAGAACAACGCTCTTTCTCGTGTCGGC
GCATACGGACTCAGTGACTCAAGAAACTATGGGACATTCCGTCCATCCCT
GTATTGTGGCCCATTCCGCGGTCCGGGTCCCATCTTGCTCGCCGACTCTG
GGTTTGCCGCTAACGGTGTCGCCGAAGCCAGCGCTCCTGTGGCAGCCACT
GCACCGCTTGCAGGAAGTGCCGGTACGGACTCCGCCTCAAAAGCGCAGGA
TCCTGTGGCCGGCGTAGACTTCTCCGAAACCAACGTGCAGGTCGAAGGCG
TTGATGAGCCAGATATTATCAAGACTGATGGCACTCGAGTGTTTGTCATA
CGCGGGAACAAGTTCTTTGTTCTGAAGGTCACCGATGGTGGCATCAATGG
CAGGGTGACTGGAGAATTGACTCTACCATCTTATGCGAGGGAGATGCTCA
TCGAAGGAGACCATCTACTCGTCATTGGACAGACGTATGGCACCATATAC
CCGACTCCACGCCTTGTCTCAAGTGGCTTCTTCTTTGATCAGAGCTTGAC
TACTGTTTACCAAATCAAGGTGACAAATGGTATCCCCAAGCTCATCGCCA
CGCTTCGCATGGAAGGTCGGTACCTGAATTCGAGGGAAGTTAACGGCGTG
GCTCGAATCGTTATGCTGTACAGGCCACATTTAAGATTCAAGTATCCCTC
TTGTGTAATTCCATACGCTAAAGCCGAAGCCCATAATCGCGACATAATTC
AAAAGTCGACGGAAAGAGATTGGTACCCTAGCTACTCTCTCAAGGTGGAA
GGCCGCGGTGGTGAGACCAAGAATTTGATATCTTCCTGCTCCAACGTGTA
CATCCCAAAAATCTTCCCTGGATTTGAACTGCTTACAGTTGTCACTCTTC
CAGTGTCAGGAAATTTGAGTCCAACCGGAAGCGTTTCAATCGTTTCTGAA
GGCGACGAAGTGTACGCGACCGCTTCGTCTCTTTACGTCACCACGACCGA
ATATCGATGGGACTTCTTCGGGCTTGAGAACAGCCTGAGATCCGGTAGGG
AGTTCAAAACATCCATTCACAAGTTTTCATTGAATAATTATGGAGCCAAG
TACGTGGCAAGCGGTGAGGTTTCAGGAAGCGTATTGAACCAATTCTCCAT
GCATGAATACAACCAAATTTTCTTCATTGCCACCACTGACGGAGCTCCTT
GGTGGGGGGCCCGTGACGAGAGTTCGAGCAAGGTGACTTCATTCAGGACA
AACGGCTACAGTAAAATGCTAATGAAGTTAGGAGAAGTTGGCAATCTCGG
ACTGGGAGAACGCATCTTTGCTGTGCGATACGTGAAGGACACAGCGTACG
TGGTCACATTTAGGCAGATTGATCCTTTGTACATCATTGATTTGTCTCGT
CCATGGTGGCTCAGAGTAACTGGAGAATTGAAAATCCCGGGATTCAGCTC
GTATCTCCATCCCATTTCTGCTGGACGTATCCTTGGTGTGGGTCAAGATG
CTACACCCGAGGGCAGAACTACAGGAGCAAAGGTGACCCTGTTTGACGTG
TCTGATAAGAAGAATCCAATGGAACTATCTTCATGGACATTACCGGGGAG
CAGCACTTCTGCCCaatgggatcatcgagcattcctgtactgggcacctg
aatctgttgcagtccttccagtgtcagcatacttCAGCTCAAATCGGTTC
ATAGGTTCGGTAGTTCTGGAGGTTTCCGAGAGTAACATTCAGGAACGCGG
ACGCATTACACATGAAACGTTATCATCGAATAGGTATACACCATCGATTG
AACGTAATCTAGTTCTTGGAGGTGAGCATTTGTGGTCTCTTTCTTCCAAA
CAGATTCAGGTTAATAATATTAAGGACCTGTCGAAAGAATCAGCCACCAC
TCTAGGCTGA

protein sequence of Gvermi1863.t1

>Gvermi1863.t1 ID=Gvermi1863.t1|Name=Gvermi1863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=670bp
MKLFSKLHTAVLAAVLLNFLPSVLAVSLNRYNSCSNLVSYFKNNALSRVG
AYGLSDSRNYGTFRPSLYCGPFRGPGPILLADSGFAANGVAEASAPVAAT
APLAGSAGTDSASKAQDPVAGVDFSETNVQVEGVDEPDIIKTDGTRVFVI
RGNKFFVLKVTDGGINGRVTGELTLPSYAREMLIEGDHLLVIGQTYGTIY
PTPRLVSSGFFFDQSLTTVYQIKVTNGIPKLIATLRMEGRYLNSREVNGV
ARIVMLYRPHLRFKYPSCVIPYAKAEAHNRDIIQKSTERDWYPSYSLKVE
GRGGETKNLISSCSNVYIPKIFPGFELLTVVTLPVSGNLSPTGSVSIVSE
GDEVYATASSLYVTTTEYRWDFFGLENSLRSGREFKTSIHKFSLNNYGAK
YVASGEVSGSVLNQFSMHEYNQIFFIATTDGAPWWGARDESSSKVTSFRT
NGYSKMLMKLGEVGNLGLGERIFAVRYVKDTAYVVTFRQIDPLYIIDLSR
PWWLRVTGELKIPGFSSYLHPISAGRILGVGQDATPEGRTTGAKVTLFDV
SDKKNPMELSSWTLPGSSTSAQWDHRAFLYWAPESVAVLPVSAYFSSNRF
IGSVVLEVSESNIQERGRITHETLSSNRYTPSIERNLVLGGEHLWSLSSK
QIQVNNIKDLSKESATTLG*

mRNA from alignment at ScGOVlb_1622:416497..418506+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1863.t1 ID=Gvermi1863.t1|Name=Gvermi1863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at ScGOVlb_1622:416497..418506+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTGTTCAGCAAACTTCACACCGCCGTTCTGGCGGCTGTGCTTCT
TAATTTCTTACCCAGCGTGTTAGCCGTTTCTCTGAATCGTTACAACAGCT
GCTCGAACCTCGTGAGCTACTTCAAGAACAACGCTCTTTCTCGTGTCGGC
GCATACGGACTCAGTGACTCAAGAAACTATGGGACATTCCGTCCATCCCT
GTATTGTGGCCCATTCCGCGGTCCGGGTCCCATCTTGCTCGCCGACTCTG
GGTTTGCCGCTAACGGTGTCGCCGAAGCCAGCGCTCCTGTGGCAGCCACT
GCACCGCTTGCAGGAAGTGCCGGTACGGACTCCGCCTCAAAAGCGCAGGA
TCCTGTGGCCGGCGTAGACTTCTCCGAAACCAACGTGCAGGTCGAAGGCG
TTGATGAGCCAGATATTATCAAGACTGATGGCACTCGAGTGTTTGTCATA
CGCGGGAACAAGTTCTTTGTTCTGAAGGTCACCGATGGTGGCATCAATGG
CAGGGTGACTGGAGAATTGACTCTACCATCTTATGCGAGGGAGATGCTCA
TCGAAGGAGACCATCTACTCGTCATTGGACAGACGTATGGCACCATATAC
CCGACTCCACGCCTTGTCTCAAGTGGCTTCTTCTTTGATCAGAGCTTGAC
TACTGTTTACCAAATCAAGGTGACAAATGGTATCCCCAAGCTCATCGCCA
CGCTTCGCATGGAAGGTCGGTACCTGAATTCGAGGGAAGTTAACGGCGTG
GCTCGAATCGTTATGCTGTACAGGCCACATTTAAGATTCAAGTATCCCTC
TTGTGTAATTCCATACGCTAAAGCCGAAGCCCATAATCGCGACATAATTC
AAAAGTCGACGGAAAGAGATTGGTACCCTAGCTACTCTCTCAAGGTGGAA
GGCCGCGGTGGTGAGACCAAGAATTTGATATCTTCCTGCTCCAACGTGTA
CATCCCAAAAATCTTCCCTGGATTTGAACTGCTTACAGTTGTCACTCTTC
CAGTGTCAGGAAATTTGAGTCCAACCGGAAGCGTTTCAATCGTTTCTGAA
GGCGACGAAGTGTACGCGACCGCTTCGTCTCTTTACGTCACCACGACCGA
ATATCGATGGGACTTCTTCGGGCTTGAGAACAGCCTGAGATCCGGTAGGG
AGTTCAAAACATCCATTCACAAGTTTTCATTGAATAATTATGGAGCCAAG
TACGTGGCAAGCGGTGAGGTTTCAGGAAGCGTATTGAACCAATTCTCCAT
GCATGAATACAACCAAATTTTCTTCATTGCCACCACTGACGGAGCTCCTT
GGTGGGGGGCCCGTGACGAGAGTTCGAGCAAGGTGACTTCATTCAGGACA
AACGGCTACAGTAAAATGCTAATGAAGTTAGGAGAAGTTGGCAATCTCGG
ACTGGGAGAACGCATCTTTGCTGTGCGATACGTGAAGGACACAGCGTACG
TGGTCACATTTAGGCAGATTGATCCTTTGTACATCATTGATTTGTCTCGT
CCATGGTGGCTCAGAGTAACTGGAGAATTGAAAATCCCGGGATTCAGCTC
GTATCTCCATCCCATTTCTGCTGGACGTATCCTTGGTGTGGGTCAAGATG
CTACACCCGAGGGCAGAACTACAGGAGCAAAGGTGACCCTGTTTGACGTG
TCTGATAAGAAGAATCCAATGGAACTATCTTCATGGACATTACCGGGGAG
CAGCACTTCTGCCCaatgggatcatcgagcattcctgtactgggcacctg
aatctgttgcagtccttccagtgtcagcatacttCAGCTCAAATCGGTTC
ATAGGTTCGGTAGTTCTGGAGGTTTCCGAGAGTAACATTCAGGAACGCGG
ACGCATTACACATGAAACGTTATCATCGAATAGGTATACACCATCGATTG
AACGTAATCTAGTTCTTGGAGGTGAGCATTTGTGGTCTCTTTCTTCCAAA
CAGATTCAGGTTAATAATATTAAGGACCTGTCGAAAGAATCAGCCACCAC
TCTAGGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_1622:416497..418506+

>Gvermi1863.t1 ID=Gvermi1863.t1|Name=Gvermi1863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2010bp|location=Sequence derived from alignment at ScGOVlb_1622:416497..418506+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTGTTCAGCAAACTTCACACCGCCGTTCTGGCGGCTGTGCTTCT
TAATTTCTTACCCAGCGTGTTAGCCGTTTCTCTGAATCGTTACAACAGCT
GCTCGAACCTCGTGAGCTACTTCAAGAACAACGCTCTTTCTCGTGTCGGC
GCATACGGACTCAGTGACTCAAGAAACTATGGGACATTCCGTCCATCCCT
GTATTGTGGCCCATTCCGCGGTCCGGGTCCCATCTTGCTCGCCGACTCTG
GGTTTGCCGCTAACGGTGTCGCCGAAGCCAGCGCTCCTGTGGCAGCCACT
GCACCGCTTGCAGGAAGTGCCGGTACGGACTCCGCCTCAAAAGCGCAGGA
TCCTGTGGCCGGCGTAGACTTCTCCGAAACCAACGTGCAGGTCGAAGGCG
TTGATGAGCCAGATATTATCAAGACTGATGGCACTCGAGTGTTTGTCATA
CGCGGGAACAAGTTCTTTGTTCTGAAGGTCACCGATGGTGGCATCAATGG
CAGGGTGACTGGAGAATTGACTCTACCATCTTATGCGAGGGAGATGCTCA
TCGAAGGAGACCATCTACTCGTCATTGGACAGACGTATGGCACCATATAC
CCGACTCCACGCCTTGTCTCAAGTGGCTTCTTCTTTGATCAGAGCTTGAC
TACTGTTTACCAAATCAAGGTGACAAATGGTATCCCCAAGCTCATCGCCA
CGCTTCGCATGGAAGGTCGGTACCTGAATTCGAGGGAAGTTAACGGCGTG
GCTCGAATCGTTATGCTGTACAGGCCACATTTAAGATTCAAGTATCCCTC
TTGTGTAATTCCATACGCTAAAGCCGAAGCCCATAATCGCGACATAATTC
AAAAGTCGACGGAAAGAGATTGGTACCCTAGCTACTCTCTCAAGGTGGAA
GGCCGCGGTGGTGAGACCAAGAATTTGATATCTTCCTGCTCCAACGTGTA
CATCCCAAAAATCTTCCCTGGATTTGAACTGCTTACAGTTGTCACTCTTC
CAGTGTCAGGAAATTTGAGTCCAACCGGAAGCGTTTCAATCGTTTCTGAA
GGCGACGAAGTGTACGCGACCGCTTCGTCTCTTTACGTCACCACGACCGA
ATATCGATGGGACTTCTTCGGGCTTGAGAACAGCCTGAGATCCGGTAGGG
AGTTCAAAACATCCATTCACAAGTTTTCATTGAATAATTATGGAGCCAAG
TACGTGGCAAGCGGTGAGGTTTCAGGAAGCGTATTGAACCAATTCTCCAT
GCATGAATACAACCAAATTTTCTTCATTGCCACCACTGACGGAGCTCCTT
GGTGGGGGGCCCGTGACGAGAGTTCGAGCAAGGTGACTTCATTCAGGACA
AACGGCTACAGTAAAATGCTAATGAAGTTAGGAGAAGTTGGCAATCTCGG
ACTGGGAGAACGCATCTTTGCTGTGCGATACGTGAAGGACACAGCGTACG
TGGTCACATTTAGGCAGATTGATCCTTTGTACATCATTGATTTGTCTCGT
CCATGGTGGCTCAGAGTAACTGGAGAATTGAAAATCCCGGGATTCAGCTC
GTATCTCCATCCCATTTCTGCTGGACGTATCCTTGGTGTGGGTCAAGATG
CTACACCCGAGGGCAGAACTACAGGAGCAAAGGTGACCCTGTTTGACGTG
TCTGATAAGAAGAATCCAATGGAACTATCTTCATGGACATTACCGGGGAG
CAGCACTTCTGCCCaatgggatcatcgagcattcctgtactgggcacctg
aatctgttgcagtccttccagtgtcagcatacttCAGCTCAAATCGGTTC
ATAGGTTCGGTAGTTCTGGAGGTTTCCGAGAGTAACATTCAGGAACGCGG
ACGCATTACACATGAAACGTTATCATCGAATAGGTATACACCATCGATTG
AACGTAATCTAGTTCTTGGAGGTGAGCATTTGTGGTCTCTTTCTTCCAAA
CAGATTCAGGTTAATAATATTAAGGACCTGTCGAAAGAATCAGCCACCAC
TCTAGGCTGA