Gvermi2004.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi2004.t1
Unique Name	Gvermi2004.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	584

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1622	contig	ScGOVlb_1622:2690048..2691799 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP297CT
PFAMs	PDZ_2,Peptidase_S41
Max annot lvl	2759\|Eukaryota
Evalue	2.37e-143
EggNOG OGs	COG0793@1\|root,2RW0A@2759\|Eukaryota
Description	Peptidase family S41
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi2004	Gvermi2004	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1622 2690048..2691799 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2004.t1.start1	Gvermi2004.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1622 2690048..2690050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2004.t1.CDS1	Gvermi2004.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 2690048..2691799 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2004.t1.exon1	Gvermi2004.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 2690048..2691799 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2004.t1.stop1	Gvermi2004.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1622 2691797..2691799 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi2004.t1	Gvermi2004.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1622 2690048..2691799 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1622:2690048..2691799+
coding sequence from alignment at ScGOVlb_1622:2690048..2691799+

mRNA sequence

>Gvermi2004.t1 ID=Gvermi2004.t1|Name=Gvermi2004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=584bp
LSVALLFFQWNGDGDSVLKQKVTLFDFILQDIDSSYVDKVDINRLFETGV
NSMLGTLDPYTQFENNAQAAEMALKTNGRYAGVGLGITLDDEGDAKASKE
QRVVVVSAFEGYAFDAGVRPGDVIESVAGRRIGGLSLETVTDMLRGEPGT
TVSVTVRREGAEQPLTFSLARQSVRIKDVPAFGFVGDDSERIGYVRLQSF
AKDAAAEVKLAVEALRSGGGRELDGLVLDLRGNPGGLLNAAIEVSELFVP
RDSVIVSTKGRGLAPDRTYVSSKQPVVAASMPLAVLVNGQTASASEIVAG
AIQDMDAGVIVGSRSFGKGLVQNVQELPFNTALKYTVGKYYTPSGRCIQA
VNYEQGGGDGAAAVRRVQEGERAEFRTARGRRVRDGGGIEPDVEVVRRAS
VLEQALLRQNMYFRFATQFGARCGAEEQVADGLGLGVADKVYGEFVAFVA
DSEFRYESRFDEALAQLDSLFDEVGYGEARARVGDVRTATKAEMRSDFVR
HERAIRRQVESAIRARFQPDSQRLLAELRDDEQLSAAVRILRSRDEYERL
LGGGVGGDAKLSAAAAAAASGADGSQLLSKTND*

spliced messenger RNA

>Gvermi2004.t1 ID=Gvermi2004.t1|Name=Gvermi2004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at ScGOVlb_1622:2690048..2691799+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCCGTGGCGCTGCTGTTCTTCCAGTGGAACGGCGACGGCGACAGCGT
GCTCAAGCAGAAGGTGACGCTGTTCGACTTCATCTTGCAGGACATCGACT
CGTCGTACGTGGACAAGGTGGACATCAACCGGCTGTTCGAGACGGGCGTC
AACTCCATGCTGGGCACGCTCGACCCGTACACGCAGTTTGAGAACAACGC
GCAGGCCGCCGAAATGGCGCTCAAGACCAACGGGCGCTACGCGGGCGTGG
GGCTGGGCATCACGCTGGACGACGAGGGCGACGCCAAGGCCAGCAAAGAG
CAGCGCGTCGTGGTGGTGTCGGCGTTCGAGGGCTACGCGTTCGACGCCGG
CGTGCGGCCCGGCGACGTGATCGAGAGCGTGGCGGGGCGGCGCATTGGCG
GGCTCTCGCTCGAGACGGTGACCGACATGCTGCGCGGCGAGCCCGGGACG
ACGGTGAGCGTGACGGTGCGGCGCGAGGGCGCCGAGCAACCGTTGACGTT
TTCGCTGGCGCGGCAGAGCGTGCGCATCAAGGACGTGCCGGCGTTTGGGT
TTGTGGGCGACGACAGCGAGCGTATAGGGTACGTGCGGCTGCAGTCGTTC
GCAAAGGACGCGGCGGCGGAGGTGAAGCTGGCCGTGGAGGCGCTGCGCAG
CGGCGGGGGGCGCGAGCTGGACGGGCTGGTGCTGGACCTGCGCGGCAACC
CCGGCGGGCTGCTCAACGCGGCGATCGAGGTTTCGGAGCTGTTCGTGCCG
CGCGACTCGGTAATCGTGTCGACAAAGGGGCGCGGGCTGGCGCCGGACCG
CACGTACGTGTCGTCCAAGCAGCCGGTGGTGGCGGCGTCGATGCCGCTGG
CGGTGCTGGTGAACGGGCAGACGGCGTCGGCCTCGGAGATTGTGGCCGGG
GCGATCCAGGACATGGACGCCGGGGTGATCGTCGGGTCGCGCAGCTTTGG
CAAGGGGCTGGTGCAGAACGTGCAGGAGCTGCCGTTCAACACGGCGCTCA
AGTACACGGTGGGCAAGTACTACACGCCAAGCGGGCGGTGCATCCAGGCG
GTGAACTACGAGCAGGGCGGGGGCGACGGGGCGGCGGCGGTGCGGCGCGT
GCAGGAGGGCGAGCGGGCGGAGTTCCGCACGGCGCGCGGGCGGCGCGTGC
GCGACGGGGGCGGCATCGAGCCGGACGTGGAGGTGGTGCGGCGCGCGAGC
GTGCTGGAGCAGGCGCTGCTGCGGCAGAACATGTACTTTCGGTTTGCGAC
GCAGTTcggggcgcggtgcggggcggaggagcaggtggcggacgggctgg
ggctgggtgtggcggACAAGGTGTACGGGGAGTTTGTGGCGTTTGTGGCG
GACAGCGAGTTCCGGTACGAGTCGCGGTTCGACGAGGCGCTGGCGCAGCT
GGACAGCTTGTTTGACGAGGTCGGGTACGGCGAGGCGCGCGCCAGGGTGG
GCGACGTGCGGACGGCGACCAAGGCGGAGATGAGGAGCGACTTTGTGCGG
CACGAGCGCGCCATCCGCAGGCAGGTGGAGTCTGCGATCCGGGCGCGCTT
CCAGCCGGACTCGCAGCGCCTgctcgccgagctgcgcgacgacgagcagc
tcagcgctgcggtgcgcatcctgcgcagcCGCGACGAGTACGAgcggctg
ctcggcggcggcgtcggcggcgatgccaagctgagcgcggcagcggctgc
ggcggcgtcgggcgccgacggcAGTCAGCTGCTTAGTAAAACGAACGACT
GA

protein sequence of Gvermi2004.t1

>Gvermi2004.t1 ID=Gvermi2004.t1|Name=Gvermi2004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=584bp
LSVALLFFQWNGDGDSVLKQKVTLFDFILQDIDSSYVDKVDINRLFETGV
NSMLGTLDPYTQFENNAQAAEMALKTNGRYAGVGLGITLDDEGDAKASKE
QRVVVVSAFEGYAFDAGVRPGDVIESVAGRRIGGLSLETVTDMLRGEPGT
TVSVTVRREGAEQPLTFSLARQSVRIKDVPAFGFVGDDSERIGYVRLQSF
AKDAAAEVKLAVEALRSGGGRELDGLVLDLRGNPGGLLNAAIEVSELFVP
RDSVIVSTKGRGLAPDRTYVSSKQPVVAASMPLAVLVNGQTASASEIVAG
AIQDMDAGVIVGSRSFGKGLVQNVQELPFNTALKYTVGKYYTPSGRCIQA
VNYEQGGGDGAAAVRRVQEGERAEFRTARGRRVRDGGGIEPDVEVVRRAS
VLEQALLRQNMYFRFATQFGARCGAEEQVADGLGLGVADKVYGEFVAFVA
DSEFRYESRFDEALAQLDSLFDEVGYGEARARVGDVRTATKAEMRSDFVR
HERAIRRQVESAIRARFQPDSQRLLAELRDDEQLSAAVRILRSRDEYERL
LGGGVGGDAKLSAAAAAAASGADGSQLLSKTND*

mRNA from alignment at ScGOVlb_1622:2690048..2691799+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi2004.t1 ID=Gvermi2004.t1|Name=Gvermi2004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at ScGOVlb_1622:2690048..2691799+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCCGTGGCGCTGCTGTTCTTCCAGTGGAACGGCGACGGCGACAGCGT
GCTCAAGCAGAAGGTGACGCTGTTCGACTTCATCTTGCAGGACATCGACT
CGTCGTACGTGGACAAGGTGGACATCAACCGGCTGTTCGAGACGGGCGTC
AACTCCATGCTGGGCACGCTCGACCCGTACACGCAGTTTGAGAACAACGC
GCAGGCCGCCGAAATGGCGCTCAAGACCAACGGGCGCTACGCGGGCGTGG
GGCTGGGCATCACGCTGGACGACGAGGGCGACGCCAAGGCCAGCAAAGAG
CAGCGCGTCGTGGTGGTGTCGGCGTTCGAGGGCTACGCGTTCGACGCCGG
CGTGCGGCCCGGCGACGTGATCGAGAGCGTGGCGGGGCGGCGCATTGGCG
GGCTCTCGCTCGAGACGGTGACCGACATGCTGCGCGGCGAGCCCGGGACG
ACGGTGAGCGTGACGGTGCGGCGCGAGGGCGCCGAGCAACCGTTGACGTT
TTCGCTGGCGCGGCAGAGCGTGCGCATCAAGGACGTGCCGGCGTTTGGGT
TTGTGGGCGACGACAGCGAGCGTATAGGGTACGTGCGGCTGCAGTCGTTC
GCAAAGGACGCGGCGGCGGAGGTGAAGCTGGCCGTGGAGGCGCTGCGCAG
CGGCGGGGGGCGCGAGCTGGACGGGCTGGTGCTGGACCTGCGCGGCAACC
CCGGCGGGCTGCTCAACGCGGCGATCGAGGTTTCGGAGCTGTTCGTGCCG
CGCGACTCGGTAATCGTGTCGACAAAGGGGCGCGGGCTGGCGCCGGACCG
CACGTACGTGTCGTCCAAGCAGCCGGTGGTGGCGGCGTCGATGCCGCTGG
CGGTGCTGGTGAACGGGCAGACGGCGTCGGCCTCGGAGATTGTGGCCGGG
GCGATCCAGGACATGGACGCCGGGGTGATCGTCGGGTCGCGCAGCTTTGG
CAAGGGGCTGGTGCAGAACGTGCAGGAGCTGCCGTTCAACACGGCGCTCA
AGTACACGGTGGGCAAGTACTACACGCCAAGCGGGCGGTGCATCCAGGCG
GTGAACTACGAGCAGGGCGGGGGCGACGGGGCGGCGGCGGTGCGGCGCGT
GCAGGAGGGCGAGCGGGCGGAGTTCCGCACGGCGCGCGGGCGGCGCGTGC
GCGACGGGGGCGGCATCGAGCCGGACGTGGAGGTGGTGCGGCGCGCGAGC
GTGCTGGAGCAGGCGCTGCTGCGGCAGAACATGTACTTTCGGTTTGCGAC
GCAGTTcggggcgcggtgcggggcggaggagcaggtggcggacgggctgg
ggctgggtgtggcggACAAGGTGTACGGGGAGTTTGTGGCGTTTGTGGCG
GACAGCGAGTTCCGGTACGAGTCGCGGTTCGACGAGGCGCTGGCGCAGCT
GGACAGCTTGTTTGACGAGGTCGGGTACGGCGAGGCGCGCGCCAGGGTGG
GCGACGTGCGGACGGCGACCAAGGCGGAGATGAGGAGCGACTTTGTGCGG
CACGAGCGCGCCATCCGCAGGCAGGTGGAGTCTGCGATCCGGGCGCGCTT
CCAGCCGGACTCGCAGCGCCTgctcgccgagctgcgcgacgacgagcagc
tcagcgctgcggtgcgcatcctgcgcagcCGCGACGAGTACGAgcggctg
ctcggcggcggcgtcggcggcgatgccaagctgagcgcggcagcggctgc
ggcggcgtcgggcgccgacggcAGTCAGCTGCTTAGTAAAACGAACGACT
GA

Coding sequence (CDS) from alignment at ScGOVlb_1622:2690048..2691799+

>Gvermi2004.t1 ID=Gvermi2004.t1|Name=Gvermi2004.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1752bp|location=Sequence derived from alignment at ScGOVlb_1622:2690048..2691799+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCCGTGGCGCTGCTGTTCTTCCAGTGGAACGGCGACGGCGACAGCGT
GCTCAAGCAGAAGGTGACGCTGTTCGACTTCATCTTGCAGGACATCGACT
CGTCGTACGTGGACAAGGTGGACATCAACCGGCTGTTCGAGACGGGCGTC
AACTCCATGCTGGGCACGCTCGACCCGTACACGCAGTTTGAGAACAACGC
GCAGGCCGCCGAAATGGCGCTCAAGACCAACGGGCGCTACGCGGGCGTGG
GGCTGGGCATCACGCTGGACGACGAGGGCGACGCCAAGGCCAGCAAAGAG
CAGCGCGTCGTGGTGGTGTCGGCGTTCGAGGGCTACGCGTTCGACGCCGG
CGTGCGGCCCGGCGACGTGATCGAGAGCGTGGCGGGGCGGCGCATTGGCG
GGCTCTCGCTCGAGACGGTGACCGACATGCTGCGCGGCGAGCCCGGGACG
ACGGTGAGCGTGACGGTGCGGCGCGAGGGCGCCGAGCAACCGTTGACGTT
TTCGCTGGCGCGGCAGAGCGTGCGCATCAAGGACGTGCCGGCGTTTGGGT
TTGTGGGCGACGACAGCGAGCGTATAGGGTACGTGCGGCTGCAGTCGTTC
GCAAAGGACGCGGCGGCGGAGGTGAAGCTGGCCGTGGAGGCGCTGCGCAG
CGGCGGGGGGCGCGAGCTGGACGGGCTGGTGCTGGACCTGCGCGGCAACC
CCGGCGGGCTGCTCAACGCGGCGATCGAGGTTTCGGAGCTGTTCGTGCCG
CGCGACTCGGTAATCGTGTCGACAAAGGGGCGCGGGCTGGCGCCGGACCG
CACGTACGTGTCGTCCAAGCAGCCGGTGGTGGCGGCGTCGATGCCGCTGG
CGGTGCTGGTGAACGGGCAGACGGCGTCGGCCTCGGAGATTGTGGCCGGG
GCGATCCAGGACATGGACGCCGGGGTGATCGTCGGGTCGCGCAGCTTTGG
CAAGGGGCTGGTGCAGAACGTGCAGGAGCTGCCGTTCAACACGGCGCTCA
AGTACACGGTGGGCAAGTACTACACGCCAAGCGGGCGGTGCATCCAGGCG
GTGAACTACGAGCAGGGCGGGGGCGACGGGGCGGCGGCGGTGCGGCGCGT
GCAGGAGGGCGAGCGGGCGGAGTTCCGCACGGCGCGCGGGCGGCGCGTGC
GCGACGGGGGCGGCATCGAGCCGGACGTGGAGGTGGTGCGGCGCGCGAGC
GTGCTGGAGCAGGCGCTGCTGCGGCAGAACATGTACTTTCGGTTTGCGAC
GCAGTTcggggcgcggtgcggggcggaggagcaggtggcggacgggctgg
ggctgggtgtggcggACAAGGTGTACGGGGAGTTTGTGGCGTTTGTGGCG
GACAGCGAGTTCCGGTACGAGTCGCGGTTCGACGAGGCGCTGGCGCAGCT
GGACAGCTTGTTTGACGAGGTCGGGTACGGCGAGGCGCGCGCCAGGGTGG
GCGACGTGCGGACGGCGACCAAGGCGGAGATGAGGAGCGACTTTGTGCGG
CACGAGCGCGCCATCCGCAGGCAGGTGGAGTCTGCGATCCGGGCGCGCTT
CCAGCCGGACTCGCAGCGCCTgctcgccgagctgcgcgacgacgagcagc
tcagcgctgcggtgcgcatcctgcgcagcCGCGACGAGTACGAgcggctg
ctcggcggcggcgtcggcggcgatgccaagctgagcgcggcagcggctgc
ggcggcgtcgggcgccgacggcAGTCAGCTGCTTAGTAAAACGAACGACT
GA