Gvermi1876.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1876.t1
Unique NameGvermi1876.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:1041054..1041832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1876Gvermi1876Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 1041054..1041832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1876.t1Gvermi1876.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 1041054..1041832 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1876.t1.start1Gvermi1876.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 1041054..1041056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1876.t1.CDS1Gvermi1876.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1041054..1041162 +
Gvermi1876.t1.CDS2Gvermi1876.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1041309..1041832 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1876.t1.exon1Gvermi1876.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1041054..1041162 +
Gvermi1876.t1.exon2Gvermi1876.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1041309..1041832 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1876.t1.intron1Gvermi1876.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 1041163..1041308 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1876.t1.stop1Gvermi1876.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 1041830..1041832 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1876.t1 ID=Gvermi1876.t1|Name=Gvermi1876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MNKPQALISNYPHILIRNTLGEHSPNTFEKTTLLDVQTAYVHEGFSEGDG
ETDKLADGDPETLGVGDDEGELLAVGETDALGDCVALGEGDGGKLIDGNT
LMDGSADGEILRDGVADTALPDAAVSESIVTDGMLELGVGIIVCEADADG
DIEIELLGSGEADCDGSALFKSISSICGVALGDGDGFSEGFLFTPHIYCL
DANCREKNMA*
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spliced messenger RNA

>Gvermi1876.t1 ID=Gvermi1876.t1|Name=Gvermi1876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_1622:1041054..1041832+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAGCCGCAGGCCTTAATCTCAAACTACCCCCACATTCTGATTCG
CAACACATTGGGAGAGCATAGTCCGAATACGTTTGAGAAAACAACCCTCC
TTGACGTCCAAACCGCGTATGTGCATGAAGGGTTTTCCGAGGGAGATGGG
GAGACTGACAAACTGGCTGATGGTGATCCTGAAACGCTGGGCGTAGGTGA
TGATGAAGGAGAACTACTCGCTGTAGGCGAGACTGATGCGCTTGGAGATT
GTGTAGCACTCGGTGAAGGAGACGGAGGCAAACTGATTGACGGCAATACG
CTCATGGATGGTAGTGCAGACGGCGAAATACTTCGTGACGGCGTCGCGGA
CACTGCACTTCCCGATGCTGCGGTCTCCGAATCAATTGTGACGGATGGAA
TGCTGGAACTTGGCGTCGGCATAATCGTATGTGAAGCAGATGCAGATGGG
GACATCGAAATCGAGTTGCTTGGAAGTGGCGAGGCAGATTGTGATGGTTC
TGCACTTTTCAAAAGCATTTCATCGATTTGTGGTGTTGCACTCGGCGATG
GGGACGGCTTTTCCGAAGGTTTTCTTTTCACTCCGCACATATACTGCCTC
GATGCCAATTGTCGAGAAAAGAACATGGCTTGA
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protein sequence of Gvermi1876.t1

>Gvermi1876.t1 ID=Gvermi1876.t1|Name=Gvermi1876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MNKPQALISNYPHILIRNTLGEHSPNTFEKTTLLDVQTAYVHEGFSEGDG
ETDKLADGDPETLGVGDDEGELLAVGETDALGDCVALGEGDGGKLIDGNT
LMDGSADGEILRDGVADTALPDAAVSESIVTDGMLELGVGIIVCEADADG
DIEIELLGSGEADCDGSALFKSISSICGVALGDGDGFSEGFLFTPHIYCL
DANCREKNMA*
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mRNA from alignment at ScGOVlb_1622:1041054..1041832+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1876.t1 ID=Gvermi1876.t1|Name=Gvermi1876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=779bp|location=Sequence derived from alignment at ScGOVlb_1622:1041054..1041832+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAAGCCGCAGGCCTTAATCTCAAACTACCCCCACATTCTGATTCG
CAACACATTGGGAGAGCATAGTCCGAATACGTTTGAGAAAACAACCCTCC
TTGACGTCCGTCACCATCCTCGCAAATTGTTCTGAGATTACCAATGTTGA
AGAAACAATTTTGAATACATGTTTGAACTCCGGGAGCTTGGACTGATTTC
TCAAAGAAAATTGAACCGCATGAGCATTTAACGAAAACTGAACCAAACAA
TTCAGAAACCGCGTATGTGCATGAAGGGTTTTCCGAGGGAGATGGGGAGA
CTGACAAACTGGCTGATGGTGATCCTGAAACGCTGGGCGTAGGTGATGAT
GAAGGAGAACTACTCGCTGTAGGCGAGACTGATGCGCTTGGAGATTGTGT
AGCACTCGGTGAAGGAGACGGAGGCAAACTGATTGACGGCAATACGCTCA
TGGATGGTAGTGCAGACGGCGAAATACTTCGTGACGGCGTCGCGGACACT
GCACTTCCCGATGCTGCGGTCTCCGAATCAATTGTGACGGATGGAATGCT
GGAACTTGGCGTCGGCATAATCGTATGTGAAGCAGATGCAGATGGGGACA
TCGAAATCGAGTTGCTTGGAAGTGGCGAGGCAGATTGTGATGGTTCTGCA
CTTTTCAAAAGCATTTCATCGATTTGTGGTGTTGCACTCGGCGATGGGGA
CGGCTTTTCCGAAGGTTTTCTTTTCACTCCGCACATATACTGCCTCGATG
CCAATTGTCGAGAAAAGAACATGGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:1041054..1041832+

>Gvermi1876.t1 ID=Gvermi1876.t1|Name=Gvermi1876.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_1622:1041054..1041832+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACAAGCCGCAGGCCTTAATCTCAAACTACCCCCACATTCTGATTCG
CAACACATTGGGAGAGCATAGTCCGAATACGTTTGAGAAAACAACCCTCC
TTGACGTCCAAACCGCGTATGTGCATGAAGGGTTTTCCGAGGGAGATGGG
GAGACTGACAAACTGGCTGATGGTGATCCTGAAACGCTGGGCGTAGGTGA
TGATGAAGGAGAACTACTCGCTGTAGGCGAGACTGATGCGCTTGGAGATT
GTGTAGCACTCGGTGAAGGAGACGGAGGCAAACTGATTGACGGCAATACG
CTCATGGATGGTAGTGCAGACGGCGAAATACTTCGTGACGGCGTCGCGGA
CACTGCACTTCCCGATGCTGCGGTCTCCGAATCAATTGTGACGGATGGAA
TGCTGGAACTTGGCGTCGGCATAATCGTATGTGAAGCAGATGCAGATGGG
GACATCGAAATCGAGTTGCTTGGAAGTGGCGAGGCAGATTGTGATGGTTC
TGCACTTTTCAAAAGCATTTCATCGATTTGTGGTGTTGCACTCGGCGATG
GGGACGGCTTTTCCGAAGGTTTTCTTTTCACTCCGCACATATACTGCCTC
GATGCCAATTGTCGAGAAAAGAACATGGCTTGA
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