Gvermi1954.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1954.t1
Unique NameGvermi1954.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2499460..2499885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5341.XP_007329632.1
Preferred nameNCB2
PFAMsCBFD_NFYB_HMF
Max annot lvl4751|Fungi
KEGG koko:K21751
GOsGO:0000122,GO:0000988,GO:0000989,GO:0001047,GO:0001067,GO:0001076,GO:0001129,GO:0001132,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003714,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0017053,GO:0017054,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034605,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036003,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043618,GO:0043620,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045893,GO:0045898,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0060260,GO:0061408,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090568,GO:0090571,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000142,GO:2001141
Evalue3.21e-26
EggNOG OGsCOG5150@1|root,KOG0871@2759|Eukaryota,3A3SW@33154|Opisthokonta,3P4GF@4751|Fungi,3V17A@5204|Basidiomycota,2299X@155619|Agaricomycetes,3W7CQ@5338|Agaricales
DescriptionHistone-like transcription factor (CBF/NF-Y) and archaeal histone
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1954Gvermi1954Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2499460..2499885 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1954.t1.start1Gvermi1954.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2499460..2499462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1954.t1.CDS1Gvermi1954.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2499460..2499885 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1954.t1.exon1Gvermi1954.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2499460..2499885 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1954.t1.stop1Gvermi1954.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2499883..2499885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1954.t1Gvermi1954.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2499460..2499885 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1954.t1 ID=Gvermi1954.t1|Name=Gvermi1954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=142bp
MSDIALPKATVNKFANDVAASLDVRLAAETRELIAECCTEFVQLLSSEAN
EICEKDSKKTITPEHVLRALEQLGLQKFRADVVDEYERAKREEKSRLKGS
SRRERNKHRSEQDNEQMLREQERLFALARSDPMAMNPPHHN*
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spliced messenger RNA

>Gvermi1954.t1 ID=Gvermi1954.t1|Name=Gvermi1954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp|location=Sequence derived from alignment at ScGOVlb_1622:2499460..2499885+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACATCGCGTTGCCCAAGGCCACGGTCAACAAGTTCGCCAACGA
CGTCGCGGCGAGCCTGGACGTGCGGCTTGCCGCCGAGACGCGCGAGCTCA
TCGCCGAGTGCTGCACCGAGTTCGTGCAGCTGCTGTCGTCGGAGGCCAAC
GAAATCTGCGAGAAGGACAGCAAGAAGACCATCACGCCCGAGCACGTGCT
GCGCGCGCTCGAGCAGCTGGGGCTGCAGAAGTTCCGCGCCGACGTCGTGG
ACGAGTACGAACGCGCCAAGCGCGAGGAGAAGAGTCGCCTCAAGGGCAGC
TCGCGCCGCGAGCGCAACAAACATCGCAGCGAGCAGGACAACGAGCAAAT
GCTGCGCGAACAGGAACGCCTTTTCGCGCTCGCACGCTCCGATCCTATGG
CCATGAATCCGCCGCACCACAACTAG
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protein sequence of Gvermi1954.t1

>Gvermi1954.t1 ID=Gvermi1954.t1|Name=Gvermi1954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=142bp
MSDIALPKATVNKFANDVAASLDVRLAAETRELIAECCTEFVQLLSSEAN
EICEKDSKKTITPEHVLRALEQLGLQKFRADVVDEYERAKREEKSRLKGS
SRRERNKHRSEQDNEQMLREQERLFALARSDPMAMNPPHHN*
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mRNA from alignment at ScGOVlb_1622:2499460..2499885+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1954.t1 ID=Gvermi1954.t1|Name=Gvermi1954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=426bp|location=Sequence derived from alignment at ScGOVlb_1622:2499460..2499885+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGACATCGCGTTGCCCAAGGCCACGGTCAACAAGTTCGCCAACGA
CGTCGCGGCGAGCCTGGACGTGCGGCTTGCCGCCGAGACGCGCGAGCTCA
TCGCCGAGTGCTGCACCGAGTTCGTGCAGCTGCTGTCGTCGGAGGCCAAC
GAAATCTGCGAGAAGGACAGCAAGAAGACCATCACGCCCGAGCACGTGCT
GCGCGCGCTCGAGCAGCTGGGGCTGCAGAAGTTCCGCGCCGACGTCGTGG
ACGAGTACGAACGCGCCAAGCGCGAGGAGAAGAGTCGCCTCAAGGGCAGC
TCGCGCCGCGAGCGCAACAAACATCGCAGCGAGCAGGACAACGAGCAAAT
GCTGCGCGAACAGGAACGCCTTTTCGCGCTCGCACGCTCCGATCCTATGG
CCATGAATCCGCCGCACCACAACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2499460..2499885+

>Gvermi1954.t1 ID=Gvermi1954.t1|Name=Gvermi1954.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=426bp|location=Sequence derived from alignment at ScGOVlb_1622:2499460..2499885+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGACATCGCGTTGCCCAAGGCCACGGTCAACAAGTTCGCCAACGA
CGTCGCGGCGAGCCTGGACGTGCGGCTTGCCGCCGAGACGCGCGAGCTCA
TCGCCGAGTGCTGCACCGAGTTCGTGCAGCTGCTGTCGTCGGAGGCCAAC
GAAATCTGCGAGAAGGACAGCAAGAAGACCATCACGCCCGAGCACGTGCT
GCGCGCGCTCGAGCAGCTGGGGCTGCAGAAGTTCCGCGCCGACGTCGTGG
ACGAGTACGAACGCGCCAAGCGCGAGGAGAAGAGTCGCCTCAAGGGCAGC
TCGCGCCGCGAGCGCAACAAACATCGCAGCGAGCAGGACAACGAGCAAAT
GCTGCGCGAACAGGAACGCCTTTTCGCGCTCGCACGCTCCGATCCTATGG
CCATGAATCCGCCGCACCACAACTAG
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