Gvermi7914.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7914.t1
Unique NameGvermi7914.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length21
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_9831contigScGOVlb_9831:1..178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7914Gvermi7914Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_9831 1..178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7914.t1Gvermi7914.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_9831 1..178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7914.t1.CDS1Gvermi7914.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_9831 1..35 -
Gvermi7914.t1.CDS2Gvermi7914.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_9831 153..178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7914.t1.exon1Gvermi7914.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_9831 1..35 -
Gvermi7914.t1.exon2Gvermi7914.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_9831 153..178 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7914.t1.intron1Gvermi7914.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_9831 36..152 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7914.t1.start1Gvermi7914.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_9831 176..178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7914.t1 ID=Gvermi7914.t1|Name=Gvermi7914.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=21bp
MSRLSLVITRLAVKYMAQHNX
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spliced messenger RNA

>Gvermi7914.t1 ID=Gvermi7914.t1|Name=Gvermi7914.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=61bp|location=Sequence derived from alignment at ScGOVlb_9831:1..178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGGCTCTCACTAGTAATAACACGACTTGCTGTGAAATACATGGC
TCAACACAATC
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protein sequence of Gvermi7914.t1

>Gvermi7914.t1 ID=Gvermi7914.t1|Name=Gvermi7914.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=21bp
MSRLSLVITRLAVKYMAQHNX
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mRNA from alignment at ScGOVlb_9831:1..178-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7914.t1 ID=Gvermi7914.t1|Name=Gvermi7914.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=178bp|location=Sequence derived from alignment at ScGOVlb_9831:1..178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGGCTCTCACTAGTAATAACGTACGTCCACTGCATTCACGCATG
GCTGCTGGTGCAAAATGCTTCTTTAATGAGGCGCATGGTACCAAGTTAAC
CAAGCTAACCAAGCTAACTCTGTACCTGCGCACCTTTTGAAAGACGACTT
GCTGTGAAATACATGGCTCAACACAATC
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Coding sequence (CDS) from alignment at ScGOVlb_9831:1..178-

>Gvermi7914.t1 ID=Gvermi7914.t1|Name=Gvermi7914.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=61bp|location=Sequence derived from alignment at ScGOVlb_9831:1..178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGGCTCTCACTAGTAATAACACGACTTGCTGTGAAATACATGGC
TCAACACAATC
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