Gvermi7242.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7242.t1
Unique NameGvermi7242.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_970contigScGOVlb_970:674..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1415778.JQMM01000001_gene696
Preferred nameprmA
PFAMsPrmA
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02687
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006480,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018011,GO:0018012,GO:0018022,GO:0018023,GO:0018193,GO:0018194,GO:0018205,GO:0019538,GO:0031365,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue2.86e-147
EggNOG OGsCOG2264@1|root,COG2264@2|Bacteria,1MUPC@1224|Proteobacteria,1RNAR@1236|Gammaproteobacteria,1J4VE@118884|unclassified Gammaproteobacteria
DescriptionRibosomal protein L11 methyltransferase
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7242Gvermi7242Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_970 674..1570 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7242.t1.stop1Gvermi7242.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_970 674..676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7242.t1.CDS1Gvermi7242.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_970 674..1570 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7242.t1.exon1Gvermi7242.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_970 674..1570 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7242.t1.start1Gvermi7242.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_970 1568..1570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7242.t1Gvermi7242.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_970 674..1570 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7242.t1 ID=Gvermi7242.t1|Name=Gvermi7242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=299bp
MPWLQLKVNSSRDQAEQIEDKLLEAGAVSVTFEDNADEPILEPALGETPL
WHETIITGLFDAASDTKAISATINKAIHDINHRWELLEDKDWEREWMKHY
HPIQCGEKLWICPSWIEPPHPESTNLLLDPGLAFGTGTHPTTFLCLQWLD
QIQSEGKLKGKTVTDYGCGSGILAIASLLLGADSSTCVDIDPQALTATAD
NAQRNGLSPDLTPVYLPDKAPNVATDVVIANILAGPLVSLAPLLNSLTKP
GGLLCLSGIIESQANEVMESYQPWFDFDAPYCHEGWVRLTATKRQLIL*
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spliced messenger RNA

>Gvermi7242.t1 ID=Gvermi7242.t1|Name=Gvermi7242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_970:674..1570- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTGGCTTCAACTCAAAGTAAACAGCTCAAGAGACCAAGCTGAACA
AATTGAAGACAAGCTATTAGAAGCCGGTGCTGTTTCCGTCACCTTTGAAG
ACAATGCTGACGAACCCATTCTCGAGCCTGCCTTGGGTGAAACACCTTTG
TGGCACGAAACAATAATTACTGGATTGTTTGATGCTGCCAGCGACACTAA
AGCAATCAGCGCAACGATCAACAAAGCAATACATGACATAAACCATCGCT
GGGAATTACTGGAAGACAAAGATTGGGAACGGGAATGGATGAAGCATTAC
CACCCCATTCAATGCGGTGAAAAACTTTGGATCTGCCCTAGCTGGATCGA
ACCACCCCACCCGGAAAGCACCAATTTGTTGCTGGACCCAGGTTTAGCAT
TTGGTACCGGCACACACCCCACAACATTTCTTTGCCTTCAATGGTTGGAT
CAAATTCAATCTGAAGGAAAACTTAAAGGAAAAACTGTCACTGACTACGG
GTGCGGCTCAGGCATTCTCGCCATTGCCTCGTTATTGCTTGGGGCAGATT
CGTCGACCTGCGTGGATATCGACCCTCAAGCGCTGACTGCCACGGCTGAC
AATGCACAAAGGAACGGGTTATCACCTGACTTAACTCCAGTGTATTTACC
CGACAAAGCACCGAACGTTGCCACTGACGTGGTTATCGCAAACATTTTAG
CAGGCCCACTGGTTTCTCTAGCTCCGTTGCTCAACTCACTCACCAAACCG
GGCGGCTTACTTTGCCTTTCAGGCATCATCGAAAGTCAGGCAAATGAAGT
CATGGAAAGCTACCAACCCTGGTTTGATTTTGATGCCCCCTATTGCCATG
AAGGATGGGTTAGACTAACAGCAACCAAACGCCAACTTATTTTATGA
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protein sequence of Gvermi7242.t1

>Gvermi7242.t1 ID=Gvermi7242.t1|Name=Gvermi7242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MPWLQLKVNSSRDQAEQIEDKLLEAGAVSVTFEDNADEPILEPALGETPL
WHETIITGLFDAASDTKAISATINKAIHDINHRWELLEDKDWEREWMKHY
HPIQCGEKLWICPSWIEPPHPESTNLLLDPGLAFGTGTHPTTFLCLQWLD
QIQSEGKLKGKTVTDYGCGSGILAIASLLLGADSSTCVDIDPQALTATAD
NAQRNGLSPDLTPVYLPDKAPNVATDVVIANILAGPLVSLAPLLNSLTKP
GGLLCLSGIIESQANEVMESYQPWFDFDAPYCHEGWVRLTATKRQLIL*
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mRNA from alignment at ScGOVlb_970:674..1570-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7242.t1 ID=Gvermi7242.t1|Name=Gvermi7242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_970:674..1570- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTGGCTTCAACTCAAAGTAAACAGCTCAAGAGACCAAGCTGAACA
AATTGAAGACAAGCTATTAGAAGCCGGTGCTGTTTCCGTCACCTTTGAAG
ACAATGCTGACGAACCCATTCTCGAGCCTGCCTTGGGTGAAACACCTTTG
TGGCACGAAACAATAATTACTGGATTGTTTGATGCTGCCAGCGACACTAA
AGCAATCAGCGCAACGATCAACAAAGCAATACATGACATAAACCATCGCT
GGGAATTACTGGAAGACAAAGATTGGGAACGGGAATGGATGAAGCATTAC
CACCCCATTCAATGCGGTGAAAAACTTTGGATCTGCCCTAGCTGGATCGA
ACCACCCCACCCGGAAAGCACCAATTTGTTGCTGGACCCAGGTTTAGCAT
TTGGTACCGGCACACACCCCACAACATTTCTTTGCCTTCAATGGTTGGAT
CAAATTCAATCTGAAGGAAAACTTAAAGGAAAAACTGTCACTGACTACGG
GTGCGGCTCAGGCATTCTCGCCATTGCCTCGTTATTGCTTGGGGCAGATT
CGTCGACCTGCGTGGATATCGACCCTCAAGCGCTGACTGCCACGGCTGAC
AATGCACAAAGGAACGGGTTATCACCTGACTTAACTCCAGTGTATTTACC
CGACAAAGCACCGAACGTTGCCACTGACGTGGTTATCGCAAACATTTTAG
CAGGCCCACTGGTTTCTCTAGCTCCGTTGCTCAACTCACTCACCAAACCG
GGCGGCTTACTTTGCCTTTCAGGCATCATCGAAAGTCAGGCAAATGAAGT
CATGGAAAGCTACCAACCCTGGTTTGATTTTGATGCCCCCTATTGCCATG
AAGGATGGGTTAGACTAACAGCAACCAAACGCCAACTTATTTTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_970:674..1570-

>Gvermi7242.t1 ID=Gvermi7242.t1|Name=Gvermi7242.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=897bp|location=Sequence derived from alignment at ScGOVlb_970:674..1570- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTGGCTTCAACTCAAAGTAAACAGCTCAAGAGACCAAGCTGAACA
AATTGAAGACAAGCTATTAGAAGCCGGTGCTGTTTCCGTCACCTTTGAAG
ACAATGCTGACGAACCCATTCTCGAGCCTGCCTTGGGTGAAACACCTTTG
TGGCACGAAACAATAATTACTGGATTGTTTGATGCTGCCAGCGACACTAA
AGCAATCAGCGCAACGATCAACAAAGCAATACATGACATAAACCATCGCT
GGGAATTACTGGAAGACAAAGATTGGGAACGGGAATGGATGAAGCATTAC
CACCCCATTCAATGCGGTGAAAAACTTTGGATCTGCCCTAGCTGGATCGA
ACCACCCCACCCGGAAAGCACCAATTTGTTGCTGGACCCAGGTTTAGCAT
TTGGTACCGGCACACACCCCACAACATTTCTTTGCCTTCAATGGTTGGAT
CAAATTCAATCTGAAGGAAAACTTAAAGGAAAAACTGTCACTGACTACGG
GTGCGGCTCAGGCATTCTCGCCATTGCCTCGTTATTGCTTGGGGCAGATT
CGTCGACCTGCGTGGATATCGACCCTCAAGCGCTGACTGCCACGGCTGAC
AATGCACAAAGGAACGGGTTATCACCTGACTTAACTCCAGTGTATTTACC
CGACAAAGCACCGAACGTTGCCACTGACGTGGTTATCGCAAACATTTTAG
CAGGCCCACTGGTTTCTCTAGCTCCGTTGCTCAACTCACTCACCAAACCG
GGCGGCTTACTTTGCCTTTCAGGCATCATCGAAAGTCAGGCAAATGAAGT
CATGGAAAGCTACCAACCCTGGTTTGATTTTGATGCCCCCTATTGCCATG
AAGGATGGGTTAGACTAACAGCAACCAAACGCCAACTTATTTTATGA
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