Gvermi7243.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7243.t1
Unique NameGvermi7243.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_970contigScGOVlb_970:1703..2179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1415778.JQMM01000001_gene697
Preferred nameaccC
PFAMsBiotin_carb_C,Biotin_carb_N,CPSase_L_D2
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01961
KEGG ReactionR00742,R04385
KEGG Pathwayko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00376
GOsGO:0003674,GO:0003824,GO:0004075,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010565,GO:0016053,GO:0016874,GO:0016879,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032787,GO:0042304,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045717,GO:0045833,GO:0045922,GO:0046394,GO:0046890,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051055,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0072330,GO:0080090,GO:1901576
Evalue6.54e-94
EggNOG OGsCOG0439@1|root,COG0439@2|Bacteria,1MU4H@1224|Proteobacteria,1RMNB@1236|Gammaproteobacteria,1J50W@118884|unclassified Gammaproteobacteria
EC6.3.4.14,6.4.1.2
DescriptionBiotin carboxylase
COG categoryI
BiGG ReactioniSF_1195.SF3294
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7243Gvermi7243Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_970 1703..2179 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7243.t1.stop1Gvermi7243.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_970 1703..1705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7243.t1.CDS1Gvermi7243.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_970 1703..2179 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7243.t1.exon1Gvermi7243.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_970 1703..2179 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7243.t1.start1Gvermi7243.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_970 2177..2179 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7243.t1Gvermi7243.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_970 1703..2179 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7243.t1 ID=Gvermi7243.t1|Name=Gvermi7243.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=159bp
MNTRVQVEHPVSEMITGVDIVKEQLLIASGEKLSYTQEDIIFRGHSFECR
INAEDSTTFMPSPGKITAYHAPGGNGVRVDSHIYAGYTVPPHYDSLVGKI
ITYGQNRAAALSRMENALDELHIEGIKTNTELQRDLVCDKAFQKGGVNIH
YLEKKLGL*
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spliced messenger RNA

>Gvermi7243.t1 ID=Gvermi7243.t1|Name=Gvermi7243.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp|location=Sequence derived from alignment at ScGOVlb_970:1703..2179- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCCGGGTTCAGGTAGAACATCCTGTCTCCGAGATGATCACTGG
CGTCGACATTGTTAAAGAGCAGCTGCTGATTGCCAGTGGAGAAAAGCTGA
GCTATACCCAGGAAGACATCATCTTCCGCGGCCATTCATTTGAATGCCGC
ATTAACGCAGAGGACTCCACGACCTTCATGCCCAGCCCCGGAAAAATCAC
CGCCTATCACGCCCCGGGCGGCAATGGGGTCAGAGTAGATTCACACATTT
ATGCAGGCTATACCGTTCCACCGCATTATGATTCCTTGGTGGGCAAGATC
ATTACTTACGGTCAAAATCGAGCAGCAGCTCTATCCCGCATGGAAAATGC
GTTGGATGAGCTCCATATTGAAGGTATAAAAACCAACACTGAACTCCAGC
GGGATTTGGTCTGTGATAAAGCATTCCAAAAAGGCGGCGTTAACATCCAC
TACTTGGAGAAAAAGCTGGGACTTTAA
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protein sequence of Gvermi7243.t1

>Gvermi7243.t1 ID=Gvermi7243.t1|Name=Gvermi7243.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=159bp
MNTRVQVEHPVSEMITGVDIVKEQLLIASGEKLSYTQEDIIFRGHSFECR
INAEDSTTFMPSPGKITAYHAPGGNGVRVDSHIYAGYTVPPHYDSLVGKI
ITYGQNRAAALSRMENALDELHIEGIKTNTELQRDLVCDKAFQKGGVNIH
YLEKKLGL*
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mRNA from alignment at ScGOVlb_970:1703..2179-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7243.t1 ID=Gvermi7243.t1|Name=Gvermi7243.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp|location=Sequence derived from alignment at ScGOVlb_970:1703..2179- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACCCGGGTTCAGGTAGAACATCCTGTCTCCGAGATGATCACTGG
CGTCGACATTGTTAAAGAGCAGCTGCTGATTGCCAGTGGAGAAAAGCTGA
GCTATACCCAGGAAGACATCATCTTCCGCGGCCATTCATTTGAATGCCGC
ATTAACGCAGAGGACTCCACGACCTTCATGCCCAGCCCCGGAAAAATCAC
CGCCTATCACGCCCCGGGCGGCAATGGGGTCAGAGTAGATTCACACATTT
ATGCAGGCTATACCGTTCCACCGCATTATGATTCCTTGGTGGGCAAGATC
ATTACTTACGGTCAAAATCGAGCAGCAGCTCTATCCCGCATGGAAAATGC
GTTGGATGAGCTCCATATTGAAGGTATAAAAACCAACACTGAACTCCAGC
GGGATTTGGTCTGTGATAAAGCATTCCAAAAAGGCGGCGTTAACATCCAC
TACTTGGAGAAAAAGCTGGGACTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_970:1703..2179-

>Gvermi7243.t1 ID=Gvermi7243.t1|Name=Gvermi7243.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=477bp|location=Sequence derived from alignment at ScGOVlb_970:1703..2179- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACCCGGGTTCAGGTAGAACATCCTGTCTCCGAGATGATCACTGG
CGTCGACATTGTTAAAGAGCAGCTGCTGATTGCCAGTGGAGAAAAGCTGA
GCTATACCCAGGAAGACATCATCTTCCGCGGCCATTCATTTGAATGCCGC
ATTAACGCAGAGGACTCCACGACCTTCATGCCCAGCCCCGGAAAAATCAC
CGCCTATCACGCCCCGGGCGGCAATGGGGTCAGAGTAGATTCACACATTT
ATGCAGGCTATACCGTTCCACCGCATTATGATTCCTTGGTGGGCAAGATC
ATTACTTACGGTCAAAATCGAGCAGCAGCTCTATCCCGCATGGAAAATGC
GTTGGATGAGCTCCATATTGAAGGTATAAAAACCAACACTGAACTCCAGC
GGGATTTGGTCTGTGATAAAGCATTCCAAAAAGGCGGCGTTAACATCCAC
TACTTGGAGAAAAAGCTGGGACTTTAA
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