Gvermi8766.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8766.t1
Unique NameGvermi8766.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_946contigScGOVlb_946:2..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8766Gvermi8766Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_946 2..1038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8766.t1.CDS1Gvermi8766.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_946 2..354 +
Gvermi8766.t1.CDS2Gvermi8766.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_946 427..1038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8766.t1.exon1Gvermi8766.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_946 2..354 +
Gvermi8766.t1.exon2Gvermi8766.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_946 427..1038 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8766.t1.intron1Gvermi8766.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_946 355..426 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8766.t1.stop1Gvermi8766.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_946 1036..1038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8766.t1Gvermi8766.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_946 2..1038 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8766.t1 ID=Gvermi8766.t1|Name=Gvermi8766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=322bp
XKELTALRERTNGIKANEEKEQQRLHQQKLADKKIEEAKIKANHNNGDNK
IGVAQAKANISLQTMVAKDAWKEEKKIKQATKRTDRLRLAGVPGAGAGRN
FFGGPSASGGIRTPQVFMRGDFMGSGDFMGGGNFTGGGGGGDYHNPMAHA
SMSVYGGHVGGGNGNYGNRNGGYGDCHTGNGYLMDHPNNRHPQPNHSQFH
AGNEDFFQPRRMYQHDGMYQHDGMYQHDGMYQHDGMHQRRNGMYQRRDGM
HQHRADGTNQRRDAPAEQSDQDDSDQQQSHASMPESPTKENWNDDEIDIN
SDGVVHDANNFYNCSFLIATK*
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spliced messenger RNA

>Gvermi8766.t1 ID=Gvermi8766.t1|Name=Gvermi8766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=965bp|location=Sequence derived from alignment at ScGOVlb_946:2..1038+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CGAAGGAACTTACAGCGCTGCGCGAACGCACCAACGGAATCAAGGCCAAC
GAAGAAAAGGAACAGCAGCGCCTCCACCAGCAGAAACTTGCTGACAAGAA
AATTGAGGAAGCAAAAATCAAGGCGAACCACAACAATGGTGACAACAAAA
TCGGTGTTGCCCAAGCCAAGGCGAACATCTCGCTGCAAACCATGGTTGCA
AAAGATGCTTGGAAGGAAGAAAAAAAGATCAAGCAGGCAACCAAGCGCAC
GGATCGCTTGCGACTAGCTGGAGTGCCAGGTGCTGGCGCGGGTCGCAACT
TTTTTGGTGGGCCTTCGGCGAGTGGTGGAATTCGCACCCCGCAGGTTTTC
ATGCGTGGGGACTTCATGGGCAGCGGGGACTTCATGGGCGGCGGGAACTT
CACGggcggcggcggcggcggcgATTACCACAATCCCATGGCCCATGCCA
GCATGAGCGTTTACGGCGGACACGTGGGCGGTGGGAACGGCAATTATGGC
AATCGCAACGGCGGTTACGGCGATTGCCACACGGGCAACGGATACCTCAT
GGATCATCCAAACAACCGCCACCCGCAGCCGAATCACAGCCAGTTCCATG
CTGGCAACGAAGACTTCTTTCAGCCTCGCCGAATGTACCAGCACGACGGA
ATGTACCAGCACGACGGAATGTACCAGCACGACGGAATGTACCAGCACGA
CGGAATGCACCAGCGCCGCAACGGCATGTACCAGCGTCGCGATGGAATGC
ACCAGCATCGTGCTGACGGAACGAACCAGCGTCGCGACGCACCTGCCGAA
CAAAGTGATCAGGATGACAGCGATCAGCAGCAATCTCACGCTTCCATGCC
GGAATCGCCTACCAAGGAAAATTGGAATGATGATGAGATCGACATCAATT
CTGATGGCGTTGTGCATGACGCCAACAACTTCTACAATTGCTCCTTTCTC
ATAGCAACAAAATAA
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protein sequence of Gvermi8766.t1

>Gvermi8766.t1 ID=Gvermi8766.t1|Name=Gvermi8766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=322bp
XKELTALRERTNGIKANEEKEQQRLHQQKLADKKIEEAKIKANHNNGDNK
IGVAQAKANISLQTMVAKDAWKEEKKIKQATKRTDRLRLAGVPGAGAGRN
FFGGPSASGGIRTPQVFMRGDFMGSGDFMGGGNFTGGGGGGDYHNPMAHA
SMSVYGGHVGGGNGNYGNRNGGYGDCHTGNGYLMDHPNNRHPQPNHSQFH
AGNEDFFQPRRMYQHDGMYQHDGMYQHDGMYQHDGMHQRRNGMYQRRDGM
HQHRADGTNQRRDAPAEQSDQDDSDQQQSHASMPESPTKENWNDDEIDIN
SDGVVHDANNFYNCSFLIATK*
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mRNA from alignment at ScGOVlb_946:2..1038+

Legend: CDSpolypeptideexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8766.t1 ID=Gvermi8766.t1|Name=Gvermi8766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1037bp|location=Sequence derived from alignment at ScGOVlb_946:2..1038+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CGAAGGAACTTACAGCGCTGCGCGAACGCACCAACGGAATCAAGGCCAAC
GAAGAAAAGGAACAGCAGCGCCTCCACCAGCAGAAACTTGCTGACAAGAA
AATTGAGGAAGCAAAAATCAAGGCGAACCACAACAATGGTGACAACAAAA
TCGGTGTTGCCCAAGCCAAGGCGAACATCTCGCTGCAAACCATGGTTGCA
AAAGATGCTTGGAAGGAAGAAAAAAAGATCAAGCAGGCAACCAAGCGCAC
GGATCGCTTGCGACTAGCTGGAGTGCCAGGTGCTGGCGCGGGTCGCAACT
TTTTTGGTGGGCCTTCGGCGAGTGGTGGAATTCGCACCCCGCAGGTTTTC
ATGGTATGTAGTGTTTTCGGGTTTGTCTACCAATTTTGTTCTTGTACAGC
ACACTCACATGCCAAAATCAAATAGCGTGGGGACTTCATGGGCAGCGGGG
ACTTCATGGGCGGCGGGAACTTCACGggcggcggcggcggcggcgATTAC
CACAATCCCATGGCCCATGCCAGCATGAGCGTTTACGGCGGACACGTGGG
CGGTGGGAACGGCAATTATGGCAATCGCAACGGCGGTTACGGCGATTGCC
ACACGGGCAACGGATACCTCATGGATCATCCAAACAACCGCCACCCGCAG
CCGAATCACAGCCAGTTCCATGCTGGCAACGAAGACTTCTTTCAGCCTCG
CCGAATGTACCAGCACGACGGAATGTACCAGCACGACGGAATGTACCAGC
ACGACGGAATGTACCAGCACGACGGAATGCACCAGCGCCGCAACGGCATG
TACCAGCGTCGCGATGGAATGCACCAGCATCGTGCTGACGGAACGAACCA
GCGTCGCGACGCACCTGCCGAACAAAGTGATCAGGATGACAGCGATCAGC
AGCAATCTCACGCTTCCATGCCGGAATCGCCTACCAAGGAAAATTGGAAT
GATGATGAGATCGACATCAATTCTGATGGCGTTGTGCATGACGCCAACAA
CTTCTACAATTGCTCCTTTCTCATAGCAACAAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_946:2..1038+

>Gvermi8766.t1 ID=Gvermi8766.t1|Name=Gvermi8766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=965bp|location=Sequence derived from alignment at ScGOVlb_946:2..1038+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CGAAGGAACTTACAGCGCTGCGCGAACGCACCAACGGAATCAAGGCCAAC
GAAGAAAAGGAACAGCAGCGCCTCCACCAGCAGAAACTTGCTGACAAGAA
AATTGAGGAAGCAAAAATCAAGGCGAACCACAACAATGGTGACAACAAAA
TCGGTGTTGCCCAAGCCAAGGCGAACATCTCGCTGCAAACCATGGTTGCA
AAAGATGCTTGGAAGGAAGAAAAAAAGATCAAGCAGGCAACCAAGCGCAC
GGATCGCTTGCGACTAGCTGGAGTGCCAGGTGCTGGCGCGGGTCGCAACT
TTTTTGGTGGGCCTTCGGCGAGTGGTGGAATTCGCACCCCGCAGGTTTTC
ATGCGTGGGGACTTCATGGGCAGCGGGGACTTCATGGGCGGCGGGAACTT
CACGggcggcggcggcggcggcgATTACCACAATCCCATGGCCCATGCCA
GCATGAGCGTTTACGGCGGACACGTGGGCGGTGGGAACGGCAATTATGGC
AATCGCAACGGCGGTTACGGCGATTGCCACACGGGCAACGGATACCTCAT
GGATCATCCAAACAACCGCCACCCGCAGCCGAATCACAGCCAGTTCCATG
CTGGCAACGAAGACTTCTTTCAGCCTCGCCGAATGTACCAGCACGACGGA
ATGTACCAGCACGACGGAATGTACCAGCACGACGGAATGTACCAGCACGA
CGGAATGCACCAGCGCCGCAACGGCATGTACCAGCGTCGCGATGGAATGC
ACCAGCATCGTGCTGACGGAACGAACCAGCGTCGCGACGCACCTGCCGAA
CAAAGTGATCAGGATGACAGCGATCAGCAGCAATCTCACGCTTCCATGCC
GGAATCGCCTACCAAGGAAAATTGGAATGATGATGAGATCGACATCAATT
CTGATGGCGTTGTGCATGACGCCAACAACTTCTACAATTGCTCCTTTCTC
ATAGCAACAAAATAA
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