Gvermi6797.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6797.t1
Unique NameGvermi6797.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length232
Homology
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BLAST of Gvermi6797.t1 vs. uniprot
Match: R7Q260_CHOCR (RNase NYN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q260_CHOCR)

HSP 1 Score: 94.4 bits (233), Expect = 1.360e-18
Identity = 51/174 (29.31%), Postives = 92/174 (52.87%), Query Frame = 0 
Query:   58 TISDTPPNIVLDGQNIARFREFGVQRTLKRSISEPRPRIDAMQIKQALDFFVERGMKPVALLPQFVVDERRGPRFNNGSNRATGKDLQMIKKLHERGLVFYTPGGTHDDYYIISFGMRNSIPIVSNDKYRKEKDRHRSQDQRRQITIYLRDNLFEFAFRDGRFT-----CKLPR 226
            TI +  P +++DGQN+ R  ++G    + +S            +K ALD++   G++ +ALLP+  VD+R   R     N     D +++ +LH +G V++TP G+HDD++I+ + MR    ++SND++ KE +   + +  R +  +L  +L  + F    F      C+L R
Sbjct:  466 TIPEGEPTVIIDGQNVGR--DYGENDHIFQSRG----------VKLALDYYAANGIRALALLPRNKVDQRTYLR-PGVRNTLVADDPELLNELHSQGRVYFTPAGSHDDFFILRYAMRKEADVISNDRFIKELEMQETAEDVRDMRTFLETHLIPYTFIGQDFVPNPNPCRLGR 626
The following BLAST results are available for this feature:
BLAST of Gvermi6797.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q260_CHOCR1.360e-1829.31RNase NYN domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11980coord: 65..229
e-value: 1.8E-21
score: 78.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 66..217
e-value: 7.3E-11
score: 42.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2327498..2328193 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6797.t1Gvermi6797.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2327498..2328193 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6797.t1 ID=Gvermi6797.t1|Name=Gvermi6797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=232bp
MKNRHRLVPPKSMQGTIETAHLHPREQKQSKHLVQHTESSGRDMQDIAHH
RQMGSISTISDTPPNIVLDGQNIARFREFGVQRTLKRSISEPRPRIDAMQ
IKQALDFFVERGMKPVALLPQFVVDERRGPRFNNGSNRATGKDLQMIKKL
HERGLVFYTPGGTHDDYYIISFGMRNSIPIVSNDKYRKEKDRHRSQDQRR
QITIYLRDNLFEFAFRDGRFTCKLPRFFGNL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12_NYN