Gvermi6764.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6764.t1
Unique NameGvermi6764.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2213409..2214152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40149.OMERI03G31690.1
PFAMsDEK_C,SWIB
Max annot lvl35493|Streptophyta
KEGG koko:K15223
GOsGO:0000120,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue1.74e-12
EggNOG OGsCOG5531@1|root,KOG1946@2759|Eukaryota,37Q9W@33090|Viridiplantae,3GDB0@35493|Streptophyta,3KUZQ@4447|Liliopsida,3I5XR@38820|Poales
DescriptionSWI complex, BAF60b domains
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6764Gvermi6764Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2213409..2214152 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6764.t1.start1Gvermi6764.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2213409..2213411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6764.t1.CDS1Gvermi6764.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2213409..2214152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6764.t1.exon1Gvermi6764.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2213409..2214152 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6764.t1.stop1Gvermi6764.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2214150..2214152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6764.t1Gvermi6764.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2213409..2214152 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6764.t1 ID=Gvermi6764.t1|Name=Gvermi6764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=248bp
MNRDTNTCLPPPIQGQKSPEPRYIRRTGLNIPVVISNELRGLIGGNDISN
RSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRL
LKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNS
IAAQKELRKQRQGMFAEVYIDPCLRPLCNGKSYLSRPDALKAVWAYIKKH
GLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK*
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spliced messenger RNA

>Gvermi6764.t1 ID=Gvermi6764.t1|Name=Gvermi6764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_88:2213409..2214152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGCGACACCAACACCTGCCTTCCCCCACCCATACAAGGCCAGAA
AAGTCCGGAGCCGCGGTACATTCGGAGAACGGGTTTAAATATCCCAGTGG
TGATTTCCAATGAATTGAGGGGCCTCATTGGAGGAAATGATATCAGCAAC
CGCAGTCAGATCCTTTCGGACCTCGGCAAATACATCAGGGAAAACAACCT
GTACATCAACGGCGAGAAAAAGCGCGTTTTGTGCGACGAACGTTTATCTG
CAGTGTTTAAAGTCACGGGCGAAGTGAGTTCCAGGGATTTCTTCCGTCTT
CTTAAACCGCATTTGACAGATCCTTCAGCTTTAGGTCCCGAATACGAGAC
ACGAGCCAAGGAGTACTTCGAGAAGTATCTCGAAGAAAGGGGCGCTCGTG
CTTCCTGGCTAGCGCCGCGGCGATATACAGATCCCCGTGGGAAAAACTCT
ATTGCGGCACAGAAAGAGCTTAGAAAACAGCGTCAGGGTATGTTTGCCGA
AGTTTATATTGATCCCTGTCTCCGGCCTCTTTGTAACGGGAAGTCTTACT
TATCGAGACCAGATGCCTTGAAAGCGGTATGGGCATACATAAAGAAGCAT
GGTTTACAAGACGCTAGGAATAGAAGACGGATCCGCGTTTCTGATACCTT
GCGTGATGCGCTCAGACTCCCAGAAATCGAATGGCTAGATTCTTTCAAGC
TGGGAAGCTACGTTTTCCGCCTGATGTCAAAGAGTGAAAAGTAG
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protein sequence of Gvermi6764.t1

>Gvermi6764.t1 ID=Gvermi6764.t1|Name=Gvermi6764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=248bp
MNRDTNTCLPPPIQGQKSPEPRYIRRTGLNIPVVISNELRGLIGGNDISN
RSQILSDLGKYIRENNLYINGEKKRVLCDERLSAVFKVTGEVSSRDFFRL
LKPHLTDPSALGPEYETRAKEYFEKYLEERGARASWLAPRRYTDPRGKNS
IAAQKELRKQRQGMFAEVYIDPCLRPLCNGKSYLSRPDALKAVWAYIKKH
GLQDARNRRRIRVSDTLRDALRLPEIEWLDSFKLGSYVFRLMSKSEK*
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mRNA from alignment at ScGOVlb_88:2213409..2214152+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6764.t1 ID=Gvermi6764.t1|Name=Gvermi6764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=744bp|location=Sequence derived from alignment at ScGOVlb_88:2213409..2214152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCGCGACACCAACACCTGCCTTCCCCCACCCATACAAGGCCAGAA
AAGTCCGGAGCCGCGGTACATTCGGAGAACGGGTTTAAATATCCCAGTGG
TGATTTCCAATGAATTGAGGGGCCTCATTGGAGGAAATGATATCAGCAAC
CGCAGTCAGATCCTTTCGGACCTCGGCAAATACATCAGGGAAAACAACCT
GTACATCAACGGCGAGAAAAAGCGCGTTTTGTGCGACGAACGTTTATCTG
CAGTGTTTAAAGTCACGGGCGAAGTGAGTTCCAGGGATTTCTTCCGTCTT
CTTAAACCGCATTTGACAGATCCTTCAGCTTTAGGTCCCGAATACGAGAC
ACGAGCCAAGGAGTACTTCGAGAAGTATCTCGAAGAAAGGGGCGCTCGTG
CTTCCTGGCTAGCGCCGCGGCGATATACAGATCCCCGTGGGAAAAACTCT
ATTGCGGCACAGAAAGAGCTTAGAAAACAGCGTCAGGGTATGTTTGCCGA
AGTTTATATTGATCCCTGTCTCCGGCCTCTTTGTAACGGGAAGTCTTACT
TATCGAGACCAGATGCCTTGAAAGCGGTATGGGCATACATAAAGAAGCAT
GGTTTACAAGACGCTAGGAATAGAAGACGGATCCGCGTTTCTGATACCTT
GCGTGATGCGCTCAGACTCCCAGAAATCGAATGGCTAGATTCTTTCAAGC
TGGGAAGCTACGTTTTCCGCCTGATGTCAAAGAGTGAAAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2213409..2214152+

>Gvermi6764.t1 ID=Gvermi6764.t1|Name=Gvermi6764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=744bp|location=Sequence derived from alignment at ScGOVlb_88:2213409..2214152+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCGCGACACCAACACCTGCCTTCCCCCACCCATACAAGGCCAGAA
AAGTCCGGAGCCGCGGTACATTCGGAGAACGGGTTTAAATATCCCAGTGG
TGATTTCCAATGAATTGAGGGGCCTCATTGGAGGAAATGATATCAGCAAC
CGCAGTCAGATCCTTTCGGACCTCGGCAAATACATCAGGGAAAACAACCT
GTACATCAACGGCGAGAAAAAGCGCGTTTTGTGCGACGAACGTTTATCTG
CAGTGTTTAAAGTCACGGGCGAAGTGAGTTCCAGGGATTTCTTCCGTCTT
CTTAAACCGCATTTGACAGATCCTTCAGCTTTAGGTCCCGAATACGAGAC
ACGAGCCAAGGAGTACTTCGAGAAGTATCTCGAAGAAAGGGGCGCTCGTG
CTTCCTGGCTAGCGCCGCGGCGATATACAGATCCCCGTGGGAAAAACTCT
ATTGCGGCACAGAAAGAGCTTAGAAAACAGCGTCAGGGTATGTTTGCCGA
AGTTTATATTGATCCCTGTCTCCGGCCTCTTTGTAACGGGAAGTCTTACT
TATCGAGACCAGATGCCTTGAAAGCGGTATGGGCATACATAAAGAAGCAT
GGTTTACAAGACGCTAGGAATAGAAGACGGATCCGCGTTTCTGATACCTT
GCGTGATGCGCTCAGACTCCCAGAAATCGAATGGCTAGATTCTTTCAAGC
TGGGAAGCTACGTTTTCCGCCTGATGTCAAAGAGTGAAAAGTAG
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