Gvermi6745.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6745.t1
Unique NameGvermi6745.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2141022..2141523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002157013.2
Preferred nameBLOC1S1
PFAMsGCN5L1
Max annot lvl33208|Metazoa
KEGG koko:K20185
GOsGO:0000323,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005829,GO:0006091,GO:0006464,GO:0006473,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008057,GO:0008088,GO:0008089,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0009060,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0015980,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0018193,GO:0018205,GO:0018394,GO:0019538,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030705,GO:0031082,GO:0031083,GO:0031090,GO:0031175,GO:0031410,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031982,GO:0032418,GO:0032438,GO:0032501,GO:0032502,GO:0032991,GO:0033059,GO:0033363,GO:0036211,GO:0036465,GO:0036466,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043473,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045333,GO:0046907,GO:0047496,GO:0048468,GO:0048489,GO:0048490,GO:0048666,GO:0048699,GO:0048731,GO:0048753,GO:0048856,GO:0048869,GO:0050808,GO:0050877,GO:0050890,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055114,GO:0060155,GO:0070013,GO:0071704,GO:0071840,GO:0072384,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0098916,GO:0098930,GO:0099003,GO:0099078,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099536,GO:0099537,GO:0120036,GO:1901564
Evalue2.29e-09
EggNOG OGsKOG3390@1|root,KOG3390@2759|Eukaryota,3A3TZ@33154|Opisthokonta,3BRWP@33208|Metazoa
Descriptionanterograde synaptic vesicle transport
COG categoryK
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6745Gvermi6745Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2141022..2141523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6745.t1Gvermi6745.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2141022..2141523 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6745.t1.stop1Gvermi6745.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2141022..2141024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6745.t1.CDS1Gvermi6745.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2141022..2141228 -
Gvermi6745.t1.CDS2Gvermi6745.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2141305..2141387 -
Gvermi6745.t1.CDS3Gvermi6745.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2141463..2141523 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6745.t1.exon1Gvermi6745.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2141022..2141228 -
Gvermi6745.t1.exon2Gvermi6745.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2141305..2141387 -
Gvermi6745.t1.exon3Gvermi6745.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2141463..2141523 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6745.t1.intron1Gvermi6745.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2141229..2141304 -
Gvermi6745.t1.intron2Gvermi6745.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2141388..2141462 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6745.t1.start1Gvermi6745.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2141521..2141523 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6745.t1 ID=Gvermi6745.t1|Name=Gvermi6745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=117bp
MLSVHLREAERKKNELKQSMTDGADTVQKAALKLSDALLKAINEDIQEVY
QAERQIETELRNVERLLSSNGFQIHQWTNLLDRLTAELKELGDVSNWVEV
LEKSAIEINNISSQLQ*
back to top

spliced messenger RNA

>Gvermi6745.t1 ID=Gvermi6745.t1|Name=Gvermi6745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=351bp|location=Sequence derived from alignment at ScGOVlb_88:2141022..2141523- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCCGTGCATCTTCGGGAGGCTGAGCGAAAAAAAAATGAGCTAAA
ACAATCCATGACCGATGGGGCAGATACAGTCCAGAAAGCAGCGTTGAAAC
TTAGCGACGCCCTTCTCAAGGCCATCAATGAGGACATCCAAGAGGTGTAT
CAAGCCGAACGACAGATCGAGACCGAGCTGCGCAACGTTGAGCGTCTGTT
GTCGTCCAACGGCTTTCAAATTCATCAGTGGACTAACTTGCTTGACCGCC
TCACTGCTGAACTGAAGGAGCTTGGCGATGTCTCCAACTGGGTCGAAGTG
CTCGAGAAGTCAGCAATTGAAATCAACAATATTTCCTCTCAGCTGCAGTA
G
back to top

protein sequence of Gvermi6745.t1

>Gvermi6745.t1 ID=Gvermi6745.t1|Name=Gvermi6745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=117bp
MLSVHLREAERKKNELKQSMTDGADTVQKAALKLSDALLKAINEDIQEVY
QAERQIETELRNVERLLSSNGFQIHQWTNLLDRLTAELKELGDVSNWVEV
LEKSAIEINNISSQLQ*
back to top

mRNA from alignment at ScGOVlb_88:2141022..2141523-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6745.t1 ID=Gvermi6745.t1|Name=Gvermi6745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=502bp|location=Sequence derived from alignment at ScGOVlb_88:2141022..2141523- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTCCGTGCATCTTCGGGAGGCTGAGCGAAAAAAAAATGAGCTAAA
ACAATCCATGAGTACGTATGTACAAAACCATTTTGAAGCTTGTCATCAGC
ATGCCCTAATCAGCTTTTATTTCCTACCGAGCTCAGCCGATGGGGCAGAT
ACAGTCCAGAAAGCAGCGTTGAAACTTAGCGACGCCCTTCTCAAGGCCAT
CAATGAGGACATCCAAGAGGTAATTCGAACACGGCTCAAGCACAGGCGAG
CATGCCCGTTCATCACGTCTAACAGACTCATGTTCGTACGAGTAGGTGTA
TCAAGCCGAACGACAGATCGAGACCGAGCTGCGCAACGTTGAGCGTCTGT
TGTCGTCCAACGGCTTTCAAATTCATCAGTGGACTAACTTGCTTGACCGC
CTCACTGCTGAACTGAAGGAGCTTGGCGATGTCTCCAACTGGGTCGAAGT
GCTCGAGAAGTCAGCAATTGAAATCAACAATATTTCCTCTCAGCTGCAGT
AG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2141022..2141523-

>Gvermi6745.t1 ID=Gvermi6745.t1|Name=Gvermi6745.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=351bp|location=Sequence derived from alignment at ScGOVlb_88:2141022..2141523- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTCCGTGCATCTTCGGGAGGCTGAGCGAAAAAAAAATGAGCTAAA
ACAATCCATGACCGATGGGGCAGATACAGTCCAGAAAGCAGCGTTGAAAC
TTAGCGACGCCCTTCTCAAGGCCATCAATGAGGACATCCAAGAGGTGTAT
CAAGCCGAACGACAGATCGAGACCGAGCTGCGCAACGTTGAGCGTCTGTT
GTCGTCCAACGGCTTTCAAATTCATCAGTGGACTAACTTGCTTGACCGCC
TCACTGCTGAACTGAAGGAGCTTGGCGATGTCTCCAACTGGGTCGAAGTG
CTCGAGAAGTCAGCAATTGAAATCAACAATATTTCCTCTCAGCTGCAGTA
G
back to top