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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4537.OPUNC02G29970.1 |
| PFAMs | Cullin,Cullin_Nedd8 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K03869 |
| KEGG Pathway | ko04120,ko04340,ko04341,map04120,map04340,map04341 |
| KEGG Module | M00384 |
| GOs | GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009909,GO:0009911,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0065007,GO:1902494,GO:1990234,GO:2000026,GO:2000241,GO:2000243 |
| Evalue | 6.74e-208 |
| EggNOG OGs | COG5647@1|root,KOG2166@2759|Eukaryota,37I6E@33090|Viridiplantae,3GEGV@35493|Streptophyta,3KRMK@4447|Liliopsida,3I2DA@38820|Poales |
| Description | Belongs to the cullin family |
| COG category | D |
| BRITE | ko00000,ko00001,ko00002,ko03400,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6730.t1 ID=Gvermi6730.t1|Name=Gvermi6730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp MARRNSGRIVISCFPQPVQLDPHFAEKTWQTLEHAINEINKRNISNLSFE QLYRYSYNMVLHKHGDYLYNGLTRLQTEHLNAVAEIIKRAEPPAFLSEIK RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHDLGLALFREVVVRHPL ILSRLSETLLESIDKERNGEAIDALLVKSVTRMLAELGQDDADKSVYEAV FEDGFLERTRQFYAREATLYLSETTCSEYLRKANQRINEERMRVECYLEL ETAPRVRRVAETELISKYMDKLIDMENSGLIWMLRNDKLEDLNLMYKLFK GIKDGEEEVRNHLKQEVLERGTEIIQDSENIRDPIALINAILTLREKYDN IVNNAFTVPAEKSSAPATNFGGSTRGVKSPPSRASADAMYLRQNRAPSSD TPNGSQSRNELVPDKRFVLAVNDAFERFVNGFNRAAEYLSLYVDKLLRKD FKGLTDDEVESKLEAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTCSD AERSFITKMKTDCGYLYTSKMEIMFNDMKTSDESTAQFREKVSQEAIDTR GIELRVFVLTTMSWPVPQVPTVNLPEDAVHCSSKFEEFYYQKHNGRRLTW QQSLGTAEIRARFTSRIYDLYSVSAYAMCILLLFNDNDCLTYREIADATL IPESELIRHLQSLSLAKHKVLKKEPREKEVKSDDKFIFNADFQSRSRRIK MQVVTAQKENEAERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIA EVTRELEPKFEPNTQEIKKRIESLVEREYLERQKDKRQVYQYIA* back to topspliced messenger RNA >Gvermi6730.t1 ID=Gvermi6730.t1|Name=Gvermi6730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2385bp|location=Sequence derived from alignment at ScGOVlb_88:2108262..2110646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGCGTCGCAACTCGGGTCGCATCGTAATCTCCTGTTTTCCGCAACC AGTTCAGCTTGACCCCCATTTCGCGGAAAAGACGTGGCAGACGCTTGAAC ACGCCATCAATGAGATTAACAAGCGCAACATTTCAAACCTCTCATTTGAA CAACTATATCGCTATTCGTACAATATGGTACTTCACAAGCACGGTGACTA TCTTTACAATGGCCTCACCCGTTTGCAGACAGAACATCTCAATGCAGTCG CCGAAATTATCAAGCGAGCAGAACCTCCAGCGTTTCTCTCAGAGATTAAG CGTCAGTGGACTTGGTTTGAGATTAGTCTCTCACATGTGCGCGAGGTGTT AATGTACATGGATCGTCACTATGTCAAGCCTAAGAAGAAGAAGAATGTTC ATGACCTTGGCCTCGCCCTCTTTCGAGAGGTAGTTGTTCGCCACCCCTTG ATTCTTTCCCGTTTATCGGAGACCCTCCTGGAAAGCATAGATAAAGAGCG AAATGGAGAAGCCATCGATGCTCTTCTCGTGAAGAGCGTCACTAGAATGC TCGCGGAACTAGGTCAGGATGATGCCGACAAATCTGTGTATGAGGCCGTG TTTGAAGACGGCTTTCTGGAACGTACTCGCCAGTTTTATGCCAGAGAAGC TACACTCTATCTGTCTGAGACAACATGTTCCGAGTATTTGCGGAAAGCAA ATCAACGTATAAACGAAGAACGCATGAGAGTCGAATGCTACTTGGAACTT GAAACAGCTCCCAGAGTGCGTCGTGTTGCAGAAACAGAGCTTATTTCCAA ATACATGGACAAGCTCATCGATATGGAAAACTCTGGCCTCATCTGGATGT TGCGTAACGACAAACTCGAAGATCTCAATCTCATGTACAAGCTTTTCAAG GGTATTAAGGATGGCGAAGAGGAGGTCCGCAACCACCTCAAACAAGAGGT TTTAGAGAGAGGAACTGAAATCATCCAGGACTCAGAAAATATTCGAGATC CCATTGCTCTTATCAACGCCATTCTTACGTTGAGGGAGAAATATGATAAC ATTGTCAATAACGCGTTTACCGTTCCAGCTGAAAAGAGCTCAGCTCCCGC TACTAACTTTGGTGGTTCAACAAGAGGGGTTAAAAGCCCACCCAGTAGAG CCTCGGCGGATGCCATGTACTTGCGACAGAATCGTGCGCCTAGTAGCGAT ACACCTAACGGTTCCCAGTCGCGAAACGAACTCGTTCCAGATAAACGCTT CGTTTTGGCGGTCAATGATGCGTTTGAACGTTTTGTGAACGGCTTCAACC GAGCCGCCGAGTATCTATCCCTGTATGTGGATAAGCTTCTCCGGAAGGAT TTCAAGGGACTTACTGACGATGAGGTCGAATCTAAGCTGGAAGCAGTCAT GGCTTTATTCCGATATCTGAGCGACAAAGATGTGTTTGAACGATACTACA AGCAACATTTGCAAAAACGACTTCTCTATTCACGATCCACTTGTTCTGAC GCAGAACGGAGTTTCATCACAAAAATGAAGACCGATTGCGGGTACTTATA CACTTCAAAGATGGAGATTATGTTTAACGATATGAAGACCAGTGACGAAA GCACTGCTCAATTCAGAGAAAAAGTTTCACAGGAAGCCATTGACACGCGG GGAATTGAATTGAGGGTTTTTGTTCTCACCACCATGAGTTGGCCTGTTCC TCAAGTTCCAACAGTTAATCTTCCAGAAGATGCTGTACACTGTTCCTCCA AGTTTGAGGAATTTTACTATCAAAAACACAACGGAAGACGGTTGACATGG CAGCAATCTCTCGGAACTGCAGAGATCCGAGCAAGGTTTACATCTCGCAT TTACGACCTTTATTCGGTATCCGCATACGCCATGTGCATTCTTCTGTTGT TTAATGATAACGACTGCCTTACGTATAGAGAAATTGCTGACGCTACACTT ATTCCTGAATCCGAACTAATAAGGCACTTGCAGAGTCTTTCGCTGGCAAA ACACAAGGTTTTGAAAAAAGAGCCCCGGGAAAAGGAAGTTAAATCAGACG ACAAATTCATTTTTAATGCAGACTTTCAGAGCCGCAGTCGAAGAATCAAG ATGCAAGTCGTCACTGCCCAAAAGGAAAACGAGGCTGAAAGAAACCATAC ACGTTGCCGCATCAATGCGGATCGTGGCCCTGTTATAGATACAGTTGTCG TGCGCATCATGAAACATCGGAAGACTTTGGAGCACAATAGACTCATTGCT GAAGTCACACGAGAGCTGGAACCGAAGTTTGAACCGAACACTCAAGAGAT TAAGAAGAGAATTGAGAGTCTTGTAGAGAGGGAATACTTGGAAAGACAAA AGGATAAGAGACAGGTATATCAGTACATTGCATAA back to topprotein sequence of Gvermi6730.t1 >Gvermi6730.t1 ID=Gvermi6730.t1|Name=Gvermi6730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=795bp
MARRNSGRIVISCFPQPVQLDPHFAEKTWQTLEHAINEINKRNISNLSFE QLYRYSYNMVLHKHGDYLYNGLTRLQTEHLNAVAEIIKRAEPPAFLSEIK RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHDLGLALFREVVVRHPL ILSRLSETLLESIDKERNGEAIDALLVKSVTRMLAELGQDDADKSVYEAV FEDGFLERTRQFYAREATLYLSETTCSEYLRKANQRINEERMRVECYLEL ETAPRVRRVAETELISKYMDKLIDMENSGLIWMLRNDKLEDLNLMYKLFK GIKDGEEEVRNHLKQEVLERGTEIIQDSENIRDPIALINAILTLREKYDN IVNNAFTVPAEKSSAPATNFGGSTRGVKSPPSRASADAMYLRQNRAPSSD TPNGSQSRNELVPDKRFVLAVNDAFERFVNGFNRAAEYLSLYVDKLLRKD FKGLTDDEVESKLEAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTCSD AERSFITKMKTDCGYLYTSKMEIMFNDMKTSDESTAQFREKVSQEAIDTR GIELRVFVLTTMSWPVPQVPTVNLPEDAVHCSSKFEEFYYQKHNGRRLTW QQSLGTAEIRARFTSRIYDLYSVSAYAMCILLLFNDNDCLTYREIADATL IPESELIRHLQSLSLAKHKVLKKEPREKEVKSDDKFIFNADFQSRSRRIK MQVVTAQKENEAERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIA EVTRELEPKFEPNTQEIKKRIESLVEREYLERQKDKRQVYQYIA* back to topmRNA from alignment at ScGOVlb_88:2108262..2110646- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6730.t1 ID=Gvermi6730.t1|Name=Gvermi6730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2385bp|location=Sequence derived from alignment at ScGOVlb_88:2108262..2110646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCGCGTCGCAACTCGGGTCGCATCGTAATCTCCTGTTTTCCGCAACC
AGTTCAGCTTGACCCCCATTTCGCGGAAAAGACGTGGCAGACGCTTGAAC
ACGCCATCAATGAGATTAACAAGCGCAACATTTCAAACCTCTCATTTGAA
CAACTATATCGCTATTCGTACAATATGGTACTTCACAAGCACGGTGACTA
TCTTTACAATGGCCTCACCCGTTTGCAGACAGAACATCTCAATGCAGTCG
CCGAAATTATCAAGCGAGCAGAACCTCCAGCGTTTCTCTCAGAGATTAAG
CGTCAGTGGACTTGGTTTGAGATTAGTCTCTCACATGTGCGCGAGGTGTT
AATGTACATGGATCGTCACTATGTCAAGCCTAAGAAGAAGAAGAATGTTC
ATGACCTTGGCCTCGCCCTCTTTCGAGAGGTAGTTGTTCGCCACCCCTTG
ATTCTTTCCCGTTTATCGGAGACCCTCCTGGAAAGCATAGATAAAGAGCG
AAATGGAGAAGCCATCGATGCTCTTCTCGTGAAGAGCGTCACTAGAATGC
TCGCGGAACTAGGTCAGGATGATGCCGACAAATCTGTGTATGAGGCCGTG
TTTGAAGACGGCTTTCTGGAACGTACTCGCCAGTTTTATGCCAGAGAAGC
TACACTCTATCTGTCTGAGACAACATGTTCCGAGTATTTGCGGAAAGCAA
ATCAACGTATAAACGAAGAACGCATGAGAGTCGAATGCTACTTGGAACTT
GAAACAGCTCCCAGAGTGCGTCGTGTTGCAGAAACAGAGCTTATTTCCAA
ATACATGGACAAGCTCATCGATATGGAAAACTCTGGCCTCATCTGGATGT
TGCGTAACGACAAACTCGAAGATCTCAATCTCATGTACAAGCTTTTCAAG
GGTATTAAGGATGGCGAAGAGGAGGTCCGCAACCACCTCAAACAAGAGGT
TTTAGAGAGAGGAACTGAAATCATCCAGGACTCAGAAAATATTCGAGATC
CCATTGCTCTTATCAACGCCATTCTTACGTTGAGGGAGAAATATGATAAC
ATTGTCAATAACGCGTTTACCGTTCCAGCTGAAAAGAGCTCAGCTCCCGC
TACTAACTTTGGTGGTTCAACAAGAGGGGTTAAAAGCCCACCCAGTAGAG
CCTCGGCGGATGCCATGTACTTGCGACAGAATCGTGCGCCTAGTAGCGAT
ACACCTAACGGTTCCCAGTCGCGAAACGAACTCGTTCCAGATAAACGCTT
CGTTTTGGCGGTCAATGATGCGTTTGAACGTTTTGTGAACGGCTTCAACC
GAGCCGCCGAGTATCTATCCCTGTATGTGGATAAGCTTCTCCGGAAGGAT
TTCAAGGGACTTACTGACGATGAGGTCGAATCTAAGCTGGAAGCAGTCAT
GGCTTTATTCCGATATCTGAGCGACAAAGATGTGTTTGAACGATACTACA
AGCAACATTTGCAAAAACGACTTCTCTATTCACGATCCACTTGTTCTGAC
GCAGAACGGAGTTTCATCACAAAAATGAAGACCGATTGCGGGTACTTATA
CACTTCAAAGATGGAGATTATGTTTAACGATATGAAGACCAGTGACGAAA
GCACTGCTCAATTCAGAGAAAAAGTTTCACAGGAAGCCATTGACACGCGG
GGAATTGAATTGAGGGTTTTTGTTCTCACCACCATGAGTTGGCCTGTTCC
TCAAGTTCCAACAGTTAATCTTCCAGAAGATGCTGTACACTGTTCCTCCA
AGTTTGAGGAATTTTACTATCAAAAACACAACGGAAGACGGTTGACATGG
CAGCAATCTCTCGGAACTGCAGAGATCCGAGCAAGGTTTACATCTCGCAT
TTACGACCTTTATTCGGTATCCGCATACGCCATGTGCATTCTTCTGTTGT
TTAATGATAACGACTGCCTTACGTATAGAGAAATTGCTGACGCTACACTT
ATTCCTGAATCCGAACTAATAAGGCACTTGCAGAGTCTTTCGCTGGCAAA
ACACAAGGTTTTGAAAAAAGAGCCCCGGGAAAAGGAAGTTAAATCAGACG
ACAAATTCATTTTTAATGCAGACTTTCAGAGCCGCAGTCGAAGAATCAAG
ATGCAAGTCGTCACTGCCCAAAAGGAAAACGAGGCTGAAAGAAACCATAC
ACGTTGCCGCATCAATGCGGATCGTGGCCCTGTTATAGATACAGTTGTCG
TGCGCATCATGAAACATCGGAAGACTTTGGAGCACAATAGACTCATTGCT
GAAGTCACACGAGAGCTGGAACCGAAGTTTGAACCGAACACTCAAGAGAT
TAAGAAGAGAATTGAGAGTCTTGTAGAGAGGGAATACTTGGAAAGACAAA
AGGATAAGAGACAGGTATATCAGTACATTGCATAA back to topCoding sequence (CDS) from alignment at ScGOVlb_88:2108262..2110646- >Gvermi6730.t1 ID=Gvermi6730.t1|Name=Gvermi6730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2385bp|location=Sequence derived from alignment at ScGOVlb_88:2108262..2110646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCGCGTCGCAACTCGGGTCGCATCGTAATCTCCTGTTTTCCGCAACC AGTTCAGCTTGACCCCCATTTCGCGGAAAAGACGTGGCAGACGCTTGAAC ACGCCATCAATGAGATTAACAAGCGCAACATTTCAAACCTCTCATTTGAA CAACTATATCGCTATTCGTACAATATGGTACTTCACAAGCACGGTGACTA TCTTTACAATGGCCTCACCCGTTTGCAGACAGAACATCTCAATGCAGTCG CCGAAATTATCAAGCGAGCAGAACCTCCAGCGTTTCTCTCAGAGATTAAG CGTCAGTGGACTTGGTTTGAGATTAGTCTCTCACATGTGCGCGAGGTGTT AATGTACATGGATCGTCACTATGTCAAGCCTAAGAAGAAGAAGAATGTTC ATGACCTTGGCCTCGCCCTCTTTCGAGAGGTAGTTGTTCGCCACCCCTTG ATTCTTTCCCGTTTATCGGAGACCCTCCTGGAAAGCATAGATAAAGAGCG AAATGGAGAAGCCATCGATGCTCTTCTCGTGAAGAGCGTCACTAGAATGC TCGCGGAACTAGGTCAGGATGATGCCGACAAATCTGTGTATGAGGCCGTG TTTGAAGACGGCTTTCTGGAACGTACTCGCCAGTTTTATGCCAGAGAAGC TACACTCTATCTGTCTGAGACAACATGTTCCGAGTATTTGCGGAAAGCAA ATCAACGTATAAACGAAGAACGCATGAGAGTCGAATGCTACTTGGAACTT GAAACAGCTCCCAGAGTGCGTCGTGTTGCAGAAACAGAGCTTATTTCCAA ATACATGGACAAGCTCATCGATATGGAAAACTCTGGCCTCATCTGGATGT TGCGTAACGACAAACTCGAAGATCTCAATCTCATGTACAAGCTTTTCAAG GGTATTAAGGATGGCGAAGAGGAGGTCCGCAACCACCTCAAACAAGAGGT TTTAGAGAGAGGAACTGAAATCATCCAGGACTCAGAAAATATTCGAGATC CCATTGCTCTTATCAACGCCATTCTTACGTTGAGGGAGAAATATGATAAC ATTGTCAATAACGCGTTTACCGTTCCAGCTGAAAAGAGCTCAGCTCCCGC TACTAACTTTGGTGGTTCAACAAGAGGGGTTAAAAGCCCACCCAGTAGAG CCTCGGCGGATGCCATGTACTTGCGACAGAATCGTGCGCCTAGTAGCGAT ACACCTAACGGTTCCCAGTCGCGAAACGAACTCGTTCCAGATAAACGCTT CGTTTTGGCGGTCAATGATGCGTTTGAACGTTTTGTGAACGGCTTCAACC GAGCCGCCGAGTATCTATCCCTGTATGTGGATAAGCTTCTCCGGAAGGAT TTCAAGGGACTTACTGACGATGAGGTCGAATCTAAGCTGGAAGCAGTCAT GGCTTTATTCCGATATCTGAGCGACAAAGATGTGTTTGAACGATACTACA AGCAACATTTGCAAAAACGACTTCTCTATTCACGATCCACTTGTTCTGAC GCAGAACGGAGTTTCATCACAAAAATGAAGACCGATTGCGGGTACTTATA CACTTCAAAGATGGAGATTATGTTTAACGATATGAAGACCAGTGACGAAA GCACTGCTCAATTCAGAGAAAAAGTTTCACAGGAAGCCATTGACACGCGG GGAATTGAATTGAGGGTTTTTGTTCTCACCACCATGAGTTGGCCTGTTCC TCAAGTTCCAACAGTTAATCTTCCAGAAGATGCTGTACACTGTTCCTCCA AGTTTGAGGAATTTTACTATCAAAAACACAACGGAAGACGGTTGACATGG CAGCAATCTCTCGGAACTGCAGAGATCCGAGCAAGGTTTACATCTCGCAT TTACGACCTTTATTCGGTATCCGCATACGCCATGTGCATTCTTCTGTTGT TTAATGATAACGACTGCCTTACGTATAGAGAAATTGCTGACGCTACACTT ATTCCTGAATCCGAACTAATAAGGCACTTGCAGAGTCTTTCGCTGGCAAA ACACAAGGTTTTGAAAAAAGAGCCCCGGGAAAAGGAAGTTAAATCAGACG ACAAATTCATTTTTAATGCAGACTTTCAGAGCCGCAGTCGAAGAATCAAG ATGCAAGTCGTCACTGCCCAAAAGGAAAACGAGGCTGAAAGAAACCATAC ACGTTGCCGCATCAATGCGGATCGTGGCCCTGTTATAGATACAGTTGTCG TGCGCATCATGAAACATCGGAAGACTTTGGAGCACAATAGACTCATTGCT GAAGTCACACGAGAGCTGGAACCGAAGTTTGAACCGAACACTCAAGAGAT TAAGAAGAGAATTGAGAGTCTTGTAGAGAGGGAATACTTGGAAAGACAAA AGGATAAGAGACAGGTATATCAGTACATTGCATAA back to top
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