Gvermi6773.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6773.t1
Unique NameGvermi6773.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length312
Homology
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A2V3J6P7_9FLOR (Nuclear nucleic acid-binding protein C1D n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6P7_9FLOR)

HSP 1 Score: 236 bits (603), Expect = 8.990e-73
Identity = 123/162 (75.93%), Postives = 136/162 (83.95%), Query Frame = 0
Query:    1 MERSHEQAQLQYTKFSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGESTEHKPKPDRDRRKHIVNAKRSSARLAALVFPEEEDLLRALQGIPGRLESKRGEKSASHV 162
            MERSH+QAQL  TKFSYA+ QLQR LRPVLSAID LRS+ NEE+LD +SR RMHISLAYAVNSLFCMYLRTQGIDP THP+AEEI RVQDAFMRMRKVEAGEST HK  P RDRRKHI N+K+S+ARLAALVFPEE+DLLRALQG   R E +  E +   +
Sbjct:    1 MERSHQQAQLALTKFSYAVEQLQRALRPVLSAIDGLRSSSNEEELDAISRTRMHISLAYAVNSLFCMYLRTQGIDPATHPIAEEIVRVQDAFMRMRKVEAGESTSHKQLPKRDRRKHIANSKKSAARLAALVFPEEDDLLRALQGKTRRPELEEAESTPQSI 162          
BLAST of Gvermi6773.t1 vs. uniprot
Match: UPI001E1D6310 (uncharacterized protein LOC123543406 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D6310)

HSP 1 Score: 102 bits (255), Expect = 1.130e-22
Identity = 60/145 (41.38%), Postives = 86/145 (59.31%), Query Frame = 0
Query:    1 MERSHEQAQLQYTKFSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGESTEHKPKPDRDRRKHIVNAKRSSARLAALVFPEEEDLLRALQG 145
            ME    Q Q     F   L  L+   R VLSA+D LR+ G E+D+ P+ RAR+  +LAYA+++LFCMYLRTQG DP THPV EEI RV+ A+MR+ +V +G+         R R++     + + ++L+ L+   E  L  A+ G
Sbjct:    1 MEAEQAQVQAALDIFGEKLDALEAATRQVLSALDELRANGGEDDVPPLVRARVDATLAYALSALFCMYLRTQGQDPSTHPVREEIGRVRAAYMRIHEVASGDK-------GRPRKRAHAPLQSAESQLSKLLTDGERALHHAVNG 138          
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A7S1T4K4_9RHOD (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4K4_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 1.800e-10
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKV 98
            F  A+  +++ L+PVL       + G + D   +  A +H++LAY +NSLF M+LRTQG+D   HPV EEI RV+ A+ ++++V
Sbjct:   12 FENAIRAIEQGLQPVLEEASVGSADGGDVDTR-LREAEVHVALAYTLNSLFYMFLRTQGVDASQHPVREEIDRVKIAYAKLQRV 94          
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A2B4S179_STYPI (Nuclear nucleic acid-binding protein C1D n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S179_STYPI)

HSP 1 Score: 66.2 bits (160), Expect = 1.730e-9
Identity = 37/108 (34.26%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVL-SAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGESTEHKPKPDRDRRKHIVNA 121
            F  ALG+++ T +P+L +++D L+     E +DP+  A++ + +AY++NS+F MYL TQG++P  HPV  E+ R++    +++  EA E  E   + D+   K  V +
Sbjct:   22 FHEALGKVEDTFKPLLETSVDDLK-----EKMDPLQSAKLDLVVAYSINSMFWMYLTTQGVNPRQHPVKSELDRIKKYMGKVK--EATEKKEASLRLDKGAAKRFVKS 122          
BLAST of Gvermi6773.t1 vs. uniprot
Match: UPI001CFED7CF (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFED7CF)

HSP 1 Score: 65.5 bits (158), Expect = 2.890e-9
Identity = 32/82 (39.02%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMR 96
            F+ +L Q++  ++P+L      +++     LDP SRA++++  AY VN+LF +YL+TQGI+P  HP+ +EIAR+Q  F +++
Sbjct:   18 FNRSLKQVESMVQPLLEQPLTTKTS----KLDPESRAKVNLCCAYTVNTLFYLYLKTQGINPDDHPIKQEIARIQLYFKKLK 95          
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A7S0WQV9_9CHLO (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQV9_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 2.910e-9
Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVLSAIDALRSAGN-EEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGEST 104
            F  AL  ++++L+PVL A     SA + +  L P+ RA +H++LA A N+LF MYL+TQG+    HPV  E+ RVQ   M + KVE  ++T
Sbjct:   17 FETALSSIEKSLQPVLGA-----SARHLDSQLKPLERAELHVTLAAAANTLFRMYLKTQGVPLDAHPVNRELERVQ---MYLDKVERAKNT 99          
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A151ZD21_9MYCE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD21_9MYCE)

HSP 1 Score: 64.7 bits (156), Expect = 3.040e-9
Identity = 36/104 (34.62%), Postives = 61/104 (58.65%), Query Frame = 0
Query:    7 QAQLQYTKFSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGESTEHKPKP 110
            Q Q   + F   L +L+  L P       +    + E L P   +++++++AYA+N+LF MYL+TQGI P  HPV  E+ R++  F+++R + + +STE + KP
Sbjct:    9 QIQQDISNFESILDKLETQLEPFFR----IPLKEHLEKLSPNDSSKLNVTVAYALNALFFMYLQTQGISPHEHPVKSELERIKPYFLKLRNL-SNKSTEEEEKP 107          
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A6A5BJN0_NAEFO (Nuclear nucleic acid-binding protein C1D n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BJN0_NAEFO)

HSP 1 Score: 65.5 bits (158), Expect = 3.500e-9
Identity = 34/82 (41.46%), Postives = 57/82 (69.51%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMR 96
            F+ +L Q++  ++P+L     L S  ++  LDP SRA++++  AY VN+LF +YL+TQGI+P  HP+ +EIAR+Q  F +++
Sbjct:   17 FNRSLKQVESLVQPLLE--QPLTSKTSK--LDPESRAKVNLCCAYTVNTLFYLYLKTQGINPDDHPIKQEIARIQLYFKKLK 94          
BLAST of Gvermi6773.t1 vs. uniprot
Match: UPI0009E49D50 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E49D50)

HSP 1 Score: 65.5 bits (158), Expect = 5.050e-9
Identity = 36/108 (33.33%), Postives = 66/108 (61.11%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVL-SAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGESTEHKPKPDRDRRKHIVNA 121
            F  ALG+++   +P+L +++D L+     E ++P+  A++ + +AYA+NS+F MYL TQG++P  HPV  E+ R++    +++  EA E  E   + D++  K  V +
Sbjct:   32 FHEALGKVEDVFKPLLETSVDDLK-----EKMNPLQSAKLDLVVAYAINSMFWMYLTTQGVNPRQHPVKSELDRIKKYMGKVK--EATEKKEASARIDKEAAKRFVKS 132          
BLAST of Gvermi6773.t1 vs. uniprot
Match: A0A6P8HNL7_ACTTE (Nuclear nucleic acid-binding protein C1D n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HNL7_ACTTE)

HSP 1 Score: 64.7 bits (156), Expect = 6.330e-9
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 0
Query:   15 FSYALGQLQRTLRPVL-SAIDALRSAGNEEDLDPMSRARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEAGESTEHKPKPDRDRRKHIVNAKRSSARLAALVFPEEED 138
            F  ALG++  T +P+L ++I+ ++     E L+P+  A++ + LAYA+NS+F MYL TQGI+P  HPV +E+ R++    +++  EA E  +   + D+   K  V +        AL  P +ED
Sbjct:   21 FHEALGKVDDTFKPLLETSIEDIK-----EKLEPLECAKLDLVLAYAINSMFWMYLITQGINPKEHPVRQELDRIKKYMGKVK--EATEKKQASMRIDQGAAKRFVKS--------ALWQPNKED 130          
The following BLAST results are available for this feature:
BLAST of Gvermi6773.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6P7_9FLOR8.990e-7375.93Nuclear nucleic acid-binding protein C1D n=1 Tax=G... [more]
UPI001E1D63101.130e-2241.38uncharacterized protein LOC123543406 n=1 Tax=Merce... [more]
A0A7S1T4K4_9RHOD1.800e-1040.48Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A2B4S179_STYPI1.730e-934.26Nuclear nucleic acid-binding protein C1D n=2 Tax=S... [more]
UPI001CFED7CF2.890e-939.02uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A7S0WQV9_9CHLO2.910e-942.86Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A151ZD21_9MYCE3.040e-934.62Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]
A0A6A5BJN0_NAEFO3.500e-941.46Nuclear nucleic acid-binding protein C1D n=1 Tax=N... [more]
UPI0009E49D505.050e-933.33nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A6P8HNL7_ACTTE6.330e-934.40Nuclear nucleic acid-binding protein C1D n=2 Tax=A... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 245..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..250
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..196
NoneNo IPR availablePANTHERPTHR15341:SF3NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1Dcoord: 7..299
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 18..92
e-value: 7.0E-10
score: 39.4
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 7..299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2235681..2236616 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6773.t1Gvermi6773.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2235681..2236616 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6773.t1 ID=Gvermi6773.t1|Name=Gvermi6773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
MERSHEQAQLQYTKFSYALGQLQRTLRPVLSAIDALRSAGNEEDLDPMSR
ARMHISLAYAVNSLFCMYLRTQGIDPLTHPVAEEIARVQDAFMRMRKVEA
GESTEHKPKPDRDRRKHIVNAKRSSARLAALVFPEEEDLLRALQGIPGRL
ESKRGEKSASHVENEELESEKHSAANTLTRPEEESSRDEDNEHATFNEVV
DFNSGDDDESGTGAEDNKDETAAELEKSEKQPESTPPASEKPTEKKKIKK
DKKEKERKKKKDKKSKDYKEKDGTEQNKNSTKSKKRKSKSDLSSGDKREK
KRKKRDKEKRG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair