Gvermi6750.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6750.t1
Unique NameGvermi6750.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2150251..2151723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI148CT
PFAMsFKBP_C,Trigger_C,Trigger_N
Max annot lvl2759|Eukaryota
Evalue3.45e-93
EggNOG OGsCOG0544@1|root,2QUET@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6750Gvermi6750Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2150251..2151723 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6750.t1.start1Gvermi6750.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2150251..2150253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6750.t1.CDS1Gvermi6750.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2150251..2151723 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6750.t1.exon1Gvermi6750.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2150251..2151723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6750.t1.stop1Gvermi6750.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2151721..2151723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6750.t1Gvermi6750.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2150251..2151723 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6750.t1 ID=Gvermi6750.t1|Name=Gvermi6750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=491bp
MYAPGFVNSTPRLWLHHHGQRSQICSARKAILTPAPLRMGLSVKTAPLPK
SQVSIEISVGKEECSAAWDSVVKELSKKSKIQGFRKGTAPKQLIINQYGK
ENLKASACEEVIEKSIQKALTDAGIHAIGQAEVDDDGGIASVIANYDPQS
SLKFKVKIDVWPEASFISSYENLEIEAEESAFDESLVDKALEDLRQKESF
SVLAPEGTKAELGKLLVADLVGYYRNDDGTKGDKLPEIADGNSIEIKMTE
GKFMAGFVEGLIGAEVGETRDVNVEFPATNSRPELAGVKAIFSVTIHAIK
DVVLPELNDDFARQVSEEKSLEDFRKTIRDRLDTESETAQEKNINTAIDN
ELAEIVQVDLPESLVENQVKNKFASMLASFKDKGMPDEQVKAMVTKENYE
MYKERARVNVEKSLRVNFAISRIAKDQNLDVDKKAVEDQMAFVRAELQGQ
DMEEDKVRDQIEAQLERELVLAHIKKSAKISLVPPKKAEK*
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spliced messenger RNA

>Gvermi6750.t1 ID=Gvermi6750.t1|Name=Gvermi6750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_88:2150251..2151723+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCCCCTGGCTTCGTAAACAGTACCCCGAGACTATGGCTCCATCA
TCATGGACAACGGTCGCAAATCTGTTCCGCTCGCAAAGCCATCCTTACAC
CAGCCCCGCTGCGCATGGGGCTTTCTGTCAAGACAGCGCCGCTTCCGAAG
AGTCAGGTGAGTATTGAGATTTCCGTGGGTAAGGAGGAATGCAGTGCGGC
ATGGGATTCCGTTGTCAAGGAGCTCTCTAAGAAGTCTAAAATCCAGGGCT
TTCGGAAGGGAACTGCTCCCAAGCAACTCATTATTAACCAGTACGGGAAG
GAGAATCTGAAGGCTAGCGCATGCGAGGAAGTTATTGAGAAATCCATTCA
GAAAGCGTTAACGGATGCTGGTATTCACGCCATTGGTCAGGCGGAGGTGG
ACGATGATGGAGGTATAGCTTCTGTAATCGCCAATTATGATCCGCAGTCT
TCATTGAAGTTCAAGGTAAAGATTGATGTCTGGCCTGAGGCTTCTTTCAT
TTCTTCTTACGAGAATCTTGAAATCGAAGCAGAAGAATCAGCTTTTGACG
AATCTTTAGTCGATAAGGCGCTTGAAGATCTGAGACAGAAAGAGTCCTTT
TCCGTCTTGGCTCCGGAAGGAACGAAGGCGGAACTGGGAAAGTTGCTGGT
AGCGGATCTAGTCGGTTACTATCGAAATGATGATGGAACCAAGGGAGACA
AATTGCCCGAAATTGCGGACGGCAACTCTATTGAAATCAAAATGACCGAG
GGTAAGTTTATGGCTGGCTTTGTCGAGGGCTTGATTGGCGCCGAAGTAGG
CGAAACACGAGATGTGAATGTTGAGTTTCCGGCCACGAATTCGCGACCTG
AGTTGGCAGGCGTGAAAGCGATTTTCTCCGTGACGATCCACGCCATCAAA
GACGTGGTGCTTCCTGAACTGAATGACGACTTTGCTCGGCAAGTCAGCGA
AGAGAAAAGCCTCGAAGATTTCCGCAAGACTATTCGCGATCGGCTCGACA
CCGAGTCGGAAACGGCTCAGGAAAAGAATATCAACACTGCGATTGATAAT
GAACTTGCCGAAATCGTTCAGGTGGACTTGCCGGAGTCTCTGGTCGAAAA
CCAGGTCAAGAACAAGTTTGCATCAATGCTTGCCTCTTTCAAGGACAAAG
GCATGCCCGATGAACAAGTCAAGGCCATGGTGACCAAAGAAAACTACGAA
ATGTACAAGGAACGAGCTCGAGTAAACGTGGAGAAGTCTTTACGCGTCAA
CTTTGCGATATCTCGTATCGCAAAGGATCAAAACCTGGATGTGGACAAGA
AGGCCGTTGAAGATCAGATGGCTTTTGTCCGTGCAGAATTGCAAGGGCAA
GATATGGAAGAGGATAAAGTACGGGATCAGATTGAGGCACAGCTTGAGCG
GGAACTAGTCTTGGCACACATTAAGAAGTCCGCTAAGATATCTCTTGTTC
CGCCAAAGAAGGCTGAGAAATAG
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protein sequence of Gvermi6750.t1

>Gvermi6750.t1 ID=Gvermi6750.t1|Name=Gvermi6750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=491bp
MYAPGFVNSTPRLWLHHHGQRSQICSARKAILTPAPLRMGLSVKTAPLPK
SQVSIEISVGKEECSAAWDSVVKELSKKSKIQGFRKGTAPKQLIINQYGK
ENLKASACEEVIEKSIQKALTDAGIHAIGQAEVDDDGGIASVIANYDPQS
SLKFKVKIDVWPEASFISSYENLEIEAEESAFDESLVDKALEDLRQKESF
SVLAPEGTKAELGKLLVADLVGYYRNDDGTKGDKLPEIADGNSIEIKMTE
GKFMAGFVEGLIGAEVGETRDVNVEFPATNSRPELAGVKAIFSVTIHAIK
DVVLPELNDDFARQVSEEKSLEDFRKTIRDRLDTESETAQEKNINTAIDN
ELAEIVQVDLPESLVENQVKNKFASMLASFKDKGMPDEQVKAMVTKENYE
MYKERARVNVEKSLRVNFAISRIAKDQNLDVDKKAVEDQMAFVRAELQGQ
DMEEDKVRDQIEAQLERELVLAHIKKSAKISLVPPKKAEK*
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mRNA from alignment at ScGOVlb_88:2150251..2151723+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6750.t1 ID=Gvermi6750.t1|Name=Gvermi6750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_88:2150251..2151723+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCCCCTGGCTTCGTAAACAGTACCCCGAGACTATGGCTCCATCA
TCATGGACAACGGTCGCAAATCTGTTCCGCTCGCAAAGCCATCCTTACAC
CAGCCCCGCTGCGCATGGGGCTTTCTGTCAAGACAGCGCCGCTTCCGAAG
AGTCAGGTGAGTATTGAGATTTCCGTGGGTAAGGAGGAATGCAGTGCGGC
ATGGGATTCCGTTGTCAAGGAGCTCTCTAAGAAGTCTAAAATCCAGGGCT
TTCGGAAGGGAACTGCTCCCAAGCAACTCATTATTAACCAGTACGGGAAG
GAGAATCTGAAGGCTAGCGCATGCGAGGAAGTTATTGAGAAATCCATTCA
GAAAGCGTTAACGGATGCTGGTATTCACGCCATTGGTCAGGCGGAGGTGG
ACGATGATGGAGGTATAGCTTCTGTAATCGCCAATTATGATCCGCAGTCT
TCATTGAAGTTCAAGGTAAAGATTGATGTCTGGCCTGAGGCTTCTTTCAT
TTCTTCTTACGAGAATCTTGAAATCGAAGCAGAAGAATCAGCTTTTGACG
AATCTTTAGTCGATAAGGCGCTTGAAGATCTGAGACAGAAAGAGTCCTTT
TCCGTCTTGGCTCCGGAAGGAACGAAGGCGGAACTGGGAAAGTTGCTGGT
AGCGGATCTAGTCGGTTACTATCGAAATGATGATGGAACCAAGGGAGACA
AATTGCCCGAAATTGCGGACGGCAACTCTATTGAAATCAAAATGACCGAG
GGTAAGTTTATGGCTGGCTTTGTCGAGGGCTTGATTGGCGCCGAAGTAGG
CGAAACACGAGATGTGAATGTTGAGTTTCCGGCCACGAATTCGCGACCTG
AGTTGGCAGGCGTGAAAGCGATTTTCTCCGTGACGATCCACGCCATCAAA
GACGTGGTGCTTCCTGAACTGAATGACGACTTTGCTCGGCAAGTCAGCGA
AGAGAAAAGCCTCGAAGATTTCCGCAAGACTATTCGCGATCGGCTCGACA
CCGAGTCGGAAACGGCTCAGGAAAAGAATATCAACACTGCGATTGATAAT
GAACTTGCCGAAATCGTTCAGGTGGACTTGCCGGAGTCTCTGGTCGAAAA
CCAGGTCAAGAACAAGTTTGCATCAATGCTTGCCTCTTTCAAGGACAAAG
GCATGCCCGATGAACAAGTCAAGGCCATGGTGACCAAAGAAAACTACGAA
ATGTACAAGGAACGAGCTCGAGTAAACGTGGAGAAGTCTTTACGCGTCAA
CTTTGCGATATCTCGTATCGCAAAGGATCAAAACCTGGATGTGGACAAGA
AGGCCGTTGAAGATCAGATGGCTTTTGTCCGTGCAGAATTGCAAGGGCAA
GATATGGAAGAGGATAAAGTACGGGATCAGATTGAGGCACAGCTTGAGCG
GGAACTAGTCTTGGCACACATTAAGAAGTCCGCTAAGATATCTCTTGTTC
CGCCAAAGAAGGCTGAGAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2150251..2151723+

>Gvermi6750.t1 ID=Gvermi6750.t1|Name=Gvermi6750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1473bp|location=Sequence derived from alignment at ScGOVlb_88:2150251..2151723+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGCCCCTGGCTTCGTAAACAGTACCCCGAGACTATGGCTCCATCA
TCATGGACAACGGTCGCAAATCTGTTCCGCTCGCAAAGCCATCCTTACAC
CAGCCCCGCTGCGCATGGGGCTTTCTGTCAAGACAGCGCCGCTTCCGAAG
AGTCAGGTGAGTATTGAGATTTCCGTGGGTAAGGAGGAATGCAGTGCGGC
ATGGGATTCCGTTGTCAAGGAGCTCTCTAAGAAGTCTAAAATCCAGGGCT
TTCGGAAGGGAACTGCTCCCAAGCAACTCATTATTAACCAGTACGGGAAG
GAGAATCTGAAGGCTAGCGCATGCGAGGAAGTTATTGAGAAATCCATTCA
GAAAGCGTTAACGGATGCTGGTATTCACGCCATTGGTCAGGCGGAGGTGG
ACGATGATGGAGGTATAGCTTCTGTAATCGCCAATTATGATCCGCAGTCT
TCATTGAAGTTCAAGGTAAAGATTGATGTCTGGCCTGAGGCTTCTTTCAT
TTCTTCTTACGAGAATCTTGAAATCGAAGCAGAAGAATCAGCTTTTGACG
AATCTTTAGTCGATAAGGCGCTTGAAGATCTGAGACAGAAAGAGTCCTTT
TCCGTCTTGGCTCCGGAAGGAACGAAGGCGGAACTGGGAAAGTTGCTGGT
AGCGGATCTAGTCGGTTACTATCGAAATGATGATGGAACCAAGGGAGACA
AATTGCCCGAAATTGCGGACGGCAACTCTATTGAAATCAAAATGACCGAG
GGTAAGTTTATGGCTGGCTTTGTCGAGGGCTTGATTGGCGCCGAAGTAGG
CGAAACACGAGATGTGAATGTTGAGTTTCCGGCCACGAATTCGCGACCTG
AGTTGGCAGGCGTGAAAGCGATTTTCTCCGTGACGATCCACGCCATCAAA
GACGTGGTGCTTCCTGAACTGAATGACGACTTTGCTCGGCAAGTCAGCGA
AGAGAAAAGCCTCGAAGATTTCCGCAAGACTATTCGCGATCGGCTCGACA
CCGAGTCGGAAACGGCTCAGGAAAAGAATATCAACACTGCGATTGATAAT
GAACTTGCCGAAATCGTTCAGGTGGACTTGCCGGAGTCTCTGGTCGAAAA
CCAGGTCAAGAACAAGTTTGCATCAATGCTTGCCTCTTTCAAGGACAAAG
GCATGCCCGATGAACAAGTCAAGGCCATGGTGACCAAAGAAAACTACGAA
ATGTACAAGGAACGAGCTCGAGTAAACGTGGAGAAGTCTTTACGCGTCAA
CTTTGCGATATCTCGTATCGCAAAGGATCAAAACCTGGATGTGGACAAGA
AGGCCGTTGAAGATCAGATGGCTTTTGTCCGTGCAGAATTGCAAGGGCAA
GATATGGAAGAGGATAAAGTACGGGATCAGATTGAGGCACAGCTTGAGCG
GGAACTAGTCTTGGCACACATTAAGAAGTCCGCTAAGATATCTCTTGTTC
CGCCAAAGAAGGCTGAGAAATAG
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