Gvermi6738.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6738.t1
Unique NameGvermi6738.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2123966..2125426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ412CT
PFAMsTPR_1,TPR_14,TPR_16,TPR_19,TPR_2,TPR_6,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Evalue4.08e-13
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
Descriptioncellular component assembly
COG categoryO
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6738Gvermi6738Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2123966..2125426 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6738.t1.stop1Gvermi6738.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2123966..2123968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6738.t1.CDS1Gvermi6738.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2123966..2125426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6738.t1.exon1Gvermi6738.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2123966..2125426 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6738.t1.start1Gvermi6738.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2125424..2125426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6738.t1Gvermi6738.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2123966..2125426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6738.t1 ID=Gvermi6738.t1|Name=Gvermi6738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=487bp
MNVRVLHAWAVMEQRCGRLHAARRLFRRCLQVDRADGIVWQSLALLEERC
GSTADARRVFETGVVHAPHSHFLWSSWGVLEQRHGRYHRACQLFEKAIQL
NADHVPTYQAYAITREKMADYIHAEQLFTHALQLNPRSVPTYQAYALFAA
RRGRLQLARELFEKGAQIDPLHAPIWHAWAVMEQKHRRYHVARELFQKGL
NAAPGNTPMLRAWAAMELRLGHIDKSADWVVPRAKFVHQPKKERTSPQDK
QRQISTVGENLKMLRLLVGKRSDDDMKTVMKWLDTRAKADRQLYDTLQKR
RGDDLRKVSEWVARRSATDIASFKEWLADRYEQDRRIGVYVFNLDIPPSR
PAPARVPVNEQVAQQEKPVEWYKLSDESVVAMNSFDDQLYLSDTAKDYVD
GMYFLGQIAERLVDRAVLMLVLGAMSLALVGASVHLFERGYSPAGAPTQH
TDSIEMPPPSGVDAHLYEEDGAEAAVRRSLQKLQIK*
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spliced messenger RNA

>Gvermi6738.t1 ID=Gvermi6738.t1|Name=Gvermi6738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_88:2123966..2125426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTGCGCGTGCTGCATGCGTGGGCCGTCATGGAGCAACGCTGTGG
CCGCCTGCATGCCGCCCGCCGCCTCTTTCGGCGCTGCTTGCAAGTCGACC
GCGCCGACGGCATCGTGTGGCAGAGCCTTGCGCTCCTGGAGGAGCGCTGC
GGCAGCACGGCCGACGCCAGGCGCGTCTTCGAGACCGGCGTCGTCCACGC
CCCGCACAGCCACTTCTTGTGGTCCTCGTGGGGCGTCCTGGAACAGCGTC
ATGGACGCTACCACCGTGCGTGCCAGCTCTTCGAGAAGGCCATCCAACTC
AATGCTGATCACGTACCCACGTACCAGGCCTATGCCATCACGCGCGAGAA
GATGGCCGACTACATCCACGCCGAGCAATTGTTCACGCATGCGCTACAGC
TTAATCCGCGCTCCGTGCCCACGTACCAGGCCTACGCTCTGTTTGCCGCC
AGGAGGGGGAGACTGCAACTCGCTCGAGAGCTCTTTGAAAAGGGCGCTCA
GATCGACCCGCTGCACGCTCCGATCTGGCATGCCTGGGCGGTCATGGAGC
AAAAGCACCGCCGCTACCACGTCGCTAGAGAGCTGTTTCAGAAAGGGCTC
AACGCCGCCCCAGGCAATACACCCATGCTTAGGGCGTGGGCCGCCATGGA
ACTGCGACTCGGTCATATTGACAAGAGCGCCGATTGGGTTGTCCCACGAG
CCAAGTTTGTTCACCAGCCCAAGAAAGAGCGAACCTCGCCGCAAGACAAG
CAACGACAAATCAGCACGGTCGGCGAGAATCTCAAAATGCTCAGGCTCTT
GGTTGGCAAGCGTTCTGATGACGATATGAAAACCGTCATGAAGTGGCTTG
ATACGCGTGCCAAGGCTGACCGCCAACTTTATGATACCCTCCAGAAACGG
AGAGGCGATGACCTCAGAAAGGTCTCTGAATGGGTGGCGAGACGCTCCGC
TACTGACATTGCGTCCTTTAAAGAGTGGTTGGCAGATCGTTACGAGCAAG
ATCGCAGGATTGGAGTGTACGTCTTTAACTTGGACATTCCGCCCTCCAGA
CCTGCTCCCGCGCGCGTTCCAGTCAACGAACAAGTGGCTCAGCAGGAAAA
ACCTGTCGAGTGGTACAAGCTTTCCGACGAATCCGTGGTGGCGATGAACT
CGTTTGACGATCAGCTGTACTTGAGTGATACTGCGAAAGACTACGTGGAC
GGCATGTATTTTTTGGGTCAGATCGCCGAGCGGCTTGTCGATCGTGCCGT
GCTGATGCTTGTTCTCGGAGCCATGTCATTAGCCTTGGTCGGCGCTTCGG
TTCATTTGTTTGAAAGGGGCTATTCGCCGGCGGGTGCTCCTACTCAGCAC
ACAGACAGTATTGAAATGCCACCGCCTTCAGGCGTAGATGCCCACCTTTA
CGAGGAAGATGGGGCAGAGGCTGCCGTCCGTCGGTCTCTACAAAAGTTGC
AAATCAAGTAA
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protein sequence of Gvermi6738.t1

>Gvermi6738.t1 ID=Gvermi6738.t1|Name=Gvermi6738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=487bp
MNVRVLHAWAVMEQRCGRLHAARRLFRRCLQVDRADGIVWQSLALLEERC
GSTADARRVFETGVVHAPHSHFLWSSWGVLEQRHGRYHRACQLFEKAIQL
NADHVPTYQAYAITREKMADYIHAEQLFTHALQLNPRSVPTYQAYALFAA
RRGRLQLARELFEKGAQIDPLHAPIWHAWAVMEQKHRRYHVARELFQKGL
NAAPGNTPMLRAWAAMELRLGHIDKSADWVVPRAKFVHQPKKERTSPQDK
QRQISTVGENLKMLRLLVGKRSDDDMKTVMKWLDTRAKADRQLYDTLQKR
RGDDLRKVSEWVARRSATDIASFKEWLADRYEQDRRIGVYVFNLDIPPSR
PAPARVPVNEQVAQQEKPVEWYKLSDESVVAMNSFDDQLYLSDTAKDYVD
GMYFLGQIAERLVDRAVLMLVLGAMSLALVGASVHLFERGYSPAGAPTQH
TDSIEMPPPSGVDAHLYEEDGAEAAVRRSLQKLQIK*
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mRNA from alignment at ScGOVlb_88:2123966..2125426-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6738.t1 ID=Gvermi6738.t1|Name=Gvermi6738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_88:2123966..2125426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGTGCGCGTGCTGCATGCGTGGGCCGTCATGGAGCAACGCTGTGG
CCGCCTGCATGCCGCCCGCCGCCTCTTTCGGCGCTGCTTGCAAGTCGACC
GCGCCGACGGCATCGTGTGGCAGAGCCTTGCGCTCCTGGAGGAGCGCTGC
GGCAGCACGGCCGACGCCAGGCGCGTCTTCGAGACCGGCGTCGTCCACGC
CCCGCACAGCCACTTCTTGTGGTCCTCGTGGGGCGTCCTGGAACAGCGTC
ATGGACGCTACCACCGTGCGTGCCAGCTCTTCGAGAAGGCCATCCAACTC
AATGCTGATCACGTACCCACGTACCAGGCCTATGCCATCACGCGCGAGAA
GATGGCCGACTACATCCACGCCGAGCAATTGTTCACGCATGCGCTACAGC
TTAATCCGCGCTCCGTGCCCACGTACCAGGCCTACGCTCTGTTTGCCGCC
AGGAGGGGGAGACTGCAACTCGCTCGAGAGCTCTTTGAAAAGGGCGCTCA
GATCGACCCGCTGCACGCTCCGATCTGGCATGCCTGGGCGGTCATGGAGC
AAAAGCACCGCCGCTACCACGTCGCTAGAGAGCTGTTTCAGAAAGGGCTC
AACGCCGCCCCAGGCAATACACCCATGCTTAGGGCGTGGGCCGCCATGGA
ACTGCGACTCGGTCATATTGACAAGAGCGCCGATTGGGTTGTCCCACGAG
CCAAGTTTGTTCACCAGCCCAAGAAAGAGCGAACCTCGCCGCAAGACAAG
CAACGACAAATCAGCACGGTCGGCGAGAATCTCAAAATGCTCAGGCTCTT
GGTTGGCAAGCGTTCTGATGACGATATGAAAACCGTCATGAAGTGGCTTG
ATACGCGTGCCAAGGCTGACCGCCAACTTTATGATACCCTCCAGAAACGG
AGAGGCGATGACCTCAGAAAGGTCTCTGAATGGGTGGCGAGACGCTCCGC
TACTGACATTGCGTCCTTTAAAGAGTGGTTGGCAGATCGTTACGAGCAAG
ATCGCAGGATTGGAGTGTACGTCTTTAACTTGGACATTCCGCCCTCCAGA
CCTGCTCCCGCGCGCGTTCCAGTCAACGAACAAGTGGCTCAGCAGGAAAA
ACCTGTCGAGTGGTACAAGCTTTCCGACGAATCCGTGGTGGCGATGAACT
CGTTTGACGATCAGCTGTACTTGAGTGATACTGCGAAAGACTACGTGGAC
GGCATGTATTTTTTGGGTCAGATCGCCGAGCGGCTTGTCGATCGTGCCGT
GCTGATGCTTGTTCTCGGAGCCATGTCATTAGCCTTGGTCGGCGCTTCGG
TTCATTTGTTTGAAAGGGGCTATTCGCCGGCGGGTGCTCCTACTCAGCAC
ACAGACAGTATTGAAATGCCACCGCCTTCAGGCGTAGATGCCCACCTTTA
CGAGGAAGATGGGGCAGAGGCTGCCGTCCGTCGGTCTCTACAAAAGTTGC
AAATCAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2123966..2125426-

>Gvermi6738.t1 ID=Gvermi6738.t1|Name=Gvermi6738.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1461bp|location=Sequence derived from alignment at ScGOVlb_88:2123966..2125426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGTGCGCGTGCTGCATGCGTGGGCCGTCATGGAGCAACGCTGTGG
CCGCCTGCATGCCGCCCGCCGCCTCTTTCGGCGCTGCTTGCAAGTCGACC
GCGCCGACGGCATCGTGTGGCAGAGCCTTGCGCTCCTGGAGGAGCGCTGC
GGCAGCACGGCCGACGCCAGGCGCGTCTTCGAGACCGGCGTCGTCCACGC
CCCGCACAGCCACTTCTTGTGGTCCTCGTGGGGCGTCCTGGAACAGCGTC
ATGGACGCTACCACCGTGCGTGCCAGCTCTTCGAGAAGGCCATCCAACTC
AATGCTGATCACGTACCCACGTACCAGGCCTATGCCATCACGCGCGAGAA
GATGGCCGACTACATCCACGCCGAGCAATTGTTCACGCATGCGCTACAGC
TTAATCCGCGCTCCGTGCCCACGTACCAGGCCTACGCTCTGTTTGCCGCC
AGGAGGGGGAGACTGCAACTCGCTCGAGAGCTCTTTGAAAAGGGCGCTCA
GATCGACCCGCTGCACGCTCCGATCTGGCATGCCTGGGCGGTCATGGAGC
AAAAGCACCGCCGCTACCACGTCGCTAGAGAGCTGTTTCAGAAAGGGCTC
AACGCCGCCCCAGGCAATACACCCATGCTTAGGGCGTGGGCCGCCATGGA
ACTGCGACTCGGTCATATTGACAAGAGCGCCGATTGGGTTGTCCCACGAG
CCAAGTTTGTTCACCAGCCCAAGAAAGAGCGAACCTCGCCGCAAGACAAG
CAACGACAAATCAGCACGGTCGGCGAGAATCTCAAAATGCTCAGGCTCTT
GGTTGGCAAGCGTTCTGATGACGATATGAAAACCGTCATGAAGTGGCTTG
ATACGCGTGCCAAGGCTGACCGCCAACTTTATGATACCCTCCAGAAACGG
AGAGGCGATGACCTCAGAAAGGTCTCTGAATGGGTGGCGAGACGCTCCGC
TACTGACATTGCGTCCTTTAAAGAGTGGTTGGCAGATCGTTACGAGCAAG
ATCGCAGGATTGGAGTGTACGTCTTTAACTTGGACATTCCGCCCTCCAGA
CCTGCTCCCGCGCGCGTTCCAGTCAACGAACAAGTGGCTCAGCAGGAAAA
ACCTGTCGAGTGGTACAAGCTTTCCGACGAATCCGTGGTGGCGATGAACT
CGTTTGACGATCAGCTGTACTTGAGTGATACTGCGAAAGACTACGTGGAC
GGCATGTATTTTTTGGGTCAGATCGCCGAGCGGCTTGTCGATCGTGCCGT
GCTGATGCTTGTTCTCGGAGCCATGTCATTAGCCTTGGTCGGCGCTTCGG
TTCATTTGTTTGAAAGGGGCTATTCGCCGGCGGGTGCTCCTACTCAGCAC
ACAGACAGTATTGAAATGCCACCGCCTTCAGGCGTAGATGCCCACCTTTA
CGAGGAAGATGGGGCAGAGGCTGCCGTCCGTCGGTCTCTACAAAAGTTGC
AAATCAAGTAA
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