Gvermi6800.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6800.t2
Unique NameGvermi6800.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length586
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2333450..2335317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_01738T0
PFAMsTPR_16,TPR_2,TPR_8
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0009987,GO:0016043,GO:0031505,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045229,GO:0071554,GO:0071555,GO:0071840,GO:0071852
Evalue6.86e-20
EggNOG OGsKOG1128@1|root,KOG1128@2759|Eukaryota,38BIC@33154|Opisthokonta,3NU02@4751|Fungi,1GT9W@112252|Fungi incertae sedis
DescriptionTetratricopeptide repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6800Gvermi6800Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2332360..2335317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6800.t2Gvermi6800.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2333450..2335317 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6800.t2.stop1Gvermi6800.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2333450..2333452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6800.t2.CDS1Gvermi6800.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2333450..2333459 -
Gvermi6800.t2.CDS2Gvermi6800.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2333570..2335317 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6800.t2.exon1Gvermi6800.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2333450..2333459 -
Gvermi6800.t2.exon2Gvermi6800.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2333570..2335317 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6800.t2.intron1Gvermi6800.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2333460..2333569 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6800.t2.start1Gvermi6800.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2335315..2335317 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6800.t2 ID=Gvermi6800.t2|Name=Gvermi6800.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=586bp
MAPINIALQTSLSTLERALLRGDEQTLRAIHPDAAALAAGYYNLFLSRMT
NGHESSTTPDLSVAITAECIRSATSVNMRSDSLKAALIDAANGSTQSLIA
AYLAGVALFQCFVRENWAGPITKPACSEQSEQAGLFLALDGEDVASQAKC
LHWLRSARFILVEHVQQFVSGGATLTPWWAARVLLAHQHVLSNPTPTMQY
TLFRMYSRFLGKHVLEMCYRFETVECIGQKHGDNEEEEEEEEEEEEEEEE
EEESDLLPAPVAEGDDNLADEDDDFLQVLDEETPQERQLMVLAFIELAQA
QRLFYDSDGALSSLKTAERLEQIAFRVTGEMGVRTKHQIKPTAQLITRAF
VLNDTSDTVMGDLDKSTFCYKFPAHPERVETDVNGSATWPITTALPLPDN
IQVDDDDVLGYVKLTSRAEILQEAKSENIEVDESDEELLNPENLGAELRN
LTPLQQALALCHAIVIRARNASHILTKEEMSPFVNMVLEGAKSPHGSGSV
LQLRAQMLRVSLERERGRFLERSMHQMEEIGRFVDDPLQSIDESLRHAAA
AERNLLVFSSSLPPRWELKKELAVSFGKIGLVRST*
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spliced messenger RNA

>Gvermi6800.t2 ID=Gvermi6800.t2|Name=Gvermi6800.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at ScGOVlb_88:2333450..2335317- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTATCAATATTGCACTCCAAACATCTCTGTCGACATTAGAGCG
CGCTCTTCTCCGGGGCGATGAGCAGACACTGCGAGCTATTCATCCCGATG
CAGCCGCCCTAGCCGCGGGTTACTACAACCTGTTCCTATCGCGGATGACA
AATGGCCACGAATCGTCCACCACACCAGATTTGTCTGTAGCCATAACTGC
CGAATGTATTCGAAGCGCTACAAGTGTCAACATGCGCAGTGACAGTCTGA
AAGCGGCCCTGATTGATGCCGCGAATGGAAGCACTCAATCATTGATTGCC
GCCTACTTGGCGGGTGTTGCCCTGTTTCAGTGTTTTGTGAGGGAGAACTG
GGCGGGGCCTATTACAAAACCGGCTTGCTCTGAGCAGAGCGAGCAGGCTG
GACTCTTTCTTGCCTTGGATGGAGAAGATGTGGCCTCACAGGCGAAGTGC
CTGCACTGGCTGCGTTCTGCCAGGTTTATATTAGTTGAACATGTCCAACA
ATTTGTAAGCGGTGGTGCAACTTTGACCCCCTGGTGGGCTGCTAGAGTTT
TGTTGGCCCACCAACATGTTCTCTCCAATCCTACCCCAACGATGCAGTAC
ACACTGTTTCGAATGTACAGTAGATTTCTTGGAAAGCATGTCTTGGAAAT
GTGTTACCGTTTTGAAACGGTGGAATGCATTGGCCAAAAGCACGGGGACA
ATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAATCAGATCTGTTGCCCGCACCCGTAGCCGAGGGAGATGACAA
TCTTGCAGACGAAGATGATGATTTTCTGCAAGTGCTTGACGAAGAGACGC
CGCAAGAAAGACAGTTGATGGTATTGGCGTTCATTGAATTAGCACAGGCG
CAGAGACTTTTTTATGACAGTGATGGTGCGCTCTCAAGCTTGAAAACTGC
GGAAAGGCTTGAGCAGATTGCCTTCCGGGTTACTGGTGAAATGGGTGTCC
GAACTAAGCATCAGATTAAACCTACTGCCCAGCTCATAACAAGAGCTTTT
GTTTTAAACGATACTTCGGACACTGTGATGGGTGATTTGGACAAAAGCAC
GTTCTGTTACAAATTTCCTGCACACCCTGAAAGAGTTGAAACTGATGTGA
ATGGCTCAGCTACATGGCCGATTACCACAGCTCTTCCACTTCCCGATAAT
ATTCAGGTTGACGATGATGACGTTCTTGGATACGTGAAGCTCACTAGTAG
AGCTGAAATTTTGCAGGAAGCTAAAAGTGAGAACATTGAAGTGGATGAAA
GTGATGAAGAACTTCTTAATCCAGAGAATCTTGGGGCCGAGCTGCGAAAT
CTTACCCCCTTACAGCAAGCACTAGCACTATGCCATGCAATTGTTATCCG
CGCCAGAAACGCTTCGCACATCCTTACAAAGGAGGAAATGTCGCCCTTCG
TCAACATGGTACTTGAGGGAGCAAAGAGCCCGCATGGCTCTGGTAGCGTG
CTGCAACTACGGGCGCAAATGCTGCGCGTGAGCCTTGAAAGAGAACGTGG
GCGTTTTCTAGAAAGATCCATGCATCAGATGGAAGAAATTGGGCGCTTTG
TTGATGATCCTCTTCAATCAATCGATGAAAGTCTCAGACATGCCGCCGCT
GCTGAACGAAATCTGTTGGTGTTTAGCTCCTCTTTGCCGCCGCGATGGGA
ACTGAAAAAGGAACTAGCTGTTTCGTTTGGCAAGATCGGCTTAGTTAGAT
CGACTTGA
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protein sequence of Gvermi6800.t2

>Gvermi6800.t2 ID=Gvermi6800.t2|Name=Gvermi6800.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=586bp
MAPINIALQTSLSTLERALLRGDEQTLRAIHPDAAALAAGYYNLFLSRMT
NGHESSTTPDLSVAITAECIRSATSVNMRSDSLKAALIDAANGSTQSLIA
AYLAGVALFQCFVRENWAGPITKPACSEQSEQAGLFLALDGEDVASQAKC
LHWLRSARFILVEHVQQFVSGGATLTPWWAARVLLAHQHVLSNPTPTMQY
TLFRMYSRFLGKHVLEMCYRFETVECIGQKHGDNEEEEEEEEEEEEEEEE
EEESDLLPAPVAEGDDNLADEDDDFLQVLDEETPQERQLMVLAFIELAQA
QRLFYDSDGALSSLKTAERLEQIAFRVTGEMGVRTKHQIKPTAQLITRAF
VLNDTSDTVMGDLDKSTFCYKFPAHPERVETDVNGSATWPITTALPLPDN
IQVDDDDVLGYVKLTSRAEILQEAKSENIEVDESDEELLNPENLGAELRN
LTPLQQALALCHAIVIRARNASHILTKEEMSPFVNMVLEGAKSPHGSGSV
LQLRAQMLRVSLERERGRFLERSMHQMEEIGRFVDDPLQSIDESLRHAAA
AERNLLVFSSSLPPRWELKKELAVSFGKIGLVRST*
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mRNA from alignment at ScGOVlb_88:2333450..2335317-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6800.t2 ID=Gvermi6800.t2|Name=Gvermi6800.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1868bp|location=Sequence derived from alignment at ScGOVlb_88:2333450..2335317- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCTATCAATATTGCACTCCAAACATCTCTGTCGACATTAGAGCG
CGCTCTTCTCCGGGGCGATGAGCAGACACTGCGAGCTATTCATCCCGATG
CAGCCGCCCTAGCCGCGGGTTACTACAACCTGTTCCTATCGCGGATGACA
AATGGCCACGAATCGTCCACCACACCAGATTTGTCTGTAGCCATAACTGC
CGAATGTATTCGAAGCGCTACAAGTGTCAACATGCGCAGTGACAGTCTGA
AAGCGGCCCTGATTGATGCCGCGAATGGAAGCACTCAATCATTGATTGCC
GCCTACTTGGCGGGTGTTGCCCTGTTTCAGTGTTTTGTGAGGGAGAACTG
GGCGGGGCCTATTACAAAACCGGCTTGCTCTGAGCAGAGCGAGCAGGCTG
GACTCTTTCTTGCCTTGGATGGAGAAGATGTGGCCTCACAGGCGAAGTGC
CTGCACTGGCTGCGTTCTGCCAGGTTTATATTAGTTGAACATGTCCAACA
ATTTGTAAGCGGTGGTGCAACTTTGACCCCCTGGTGGGCTGCTAGAGTTT
TGTTGGCCCACCAACATGTTCTCTCCAATCCTACCCCAACGATGCAGTAC
ACACTGTTTCGAATGTACAGTAGATTTCTTGGAAAGCATGTCTTGGAAAT
GTGTTACCGTTTTGAAACGGTGGAATGCATTGGCCAAAAGCACGGGGACA
ATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAATCAGATCTGTTGCCCGCACCCGTAGCCGAGGGAGATGACAA
TCTTGCAGACGAAGATGATGATTTTCTGCAAGTGCTTGACGAAGAGACGC
CGCAAGAAAGACAGTTGATGGTATTGGCGTTCATTGAATTAGCACAGGCG
CAGAGACTTTTTTATGACAGTGATGGTGCGCTCTCAAGCTTGAAAACTGC
GGAAAGGCTTGAGCAGATTGCCTTCCGGGTTACTGGTGAAATGGGTGTCC
GAACTAAGCATCAGATTAAACCTACTGCCCAGCTCATAACAAGAGCTTTT
GTTTTAAACGATACTTCGGACACTGTGATGGGTGATTTGGACAAAAGCAC
GTTCTGTTACAAATTTCCTGCACACCCTGAAAGAGTTGAAACTGATGTGA
ATGGCTCAGCTACATGGCCGATTACCACAGCTCTTCCACTTCCCGATAAT
ATTCAGGTTGACGATGATGACGTTCTTGGATACGTGAAGCTCACTAGTAG
AGCTGAAATTTTGCAGGAAGCTAAAAGTGAGAACATTGAAGTGGATGAAA
GTGATGAAGAACTTCTTAATCCAGAGAATCTTGGGGCCGAGCTGCGAAAT
CTTACCCCCTTACAGCAAGCACTAGCACTATGCCATGCAATTGTTATCCG
CGCCAGAAACGCTTCGCACATCCTTACAAAGGAGGAAATGTCGCCCTTCG
TCAACATGGTACTTGAGGGAGCAAAGAGCCCGCATGGCTCTGGTAGCGTG
CTGCAACTACGGGCGCAAATGCTGCGCGTGAGCCTTGAAAGAGAACGTGG
GCGTTTTCTAGAAAGATCCATGCATCAGATGGAAGAAATTGGGCGCTTTG
TTGATGATCCTCTTCAATCAATCGATGAAAGTCTCAGACATGCCGCCGCT
GCTGAACGAAATCTGTTGGTGTTTAGCTCCTCTTTGCCGCCGCGATGGGA
ACTGAAAAAGGAACTAGCTGTTTCGTTTGGCAAGATCGGCTTAGTTAGGT
CAGCGATGGAAATCTTTGAAGAACTAGAGTTTTGGGACGAACTAGTAGAT
TGTCATCGATTGATCGGGAATCTCGGAGCCGCCGAGGACCTCGTCCGTAA
AGAACTAGATCGACTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2333450..2335317-

>Gvermi6800.t2 ID=Gvermi6800.t2|Name=Gvermi6800.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1758bp|location=Sequence derived from alignment at ScGOVlb_88:2333450..2335317- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCTATCAATATTGCACTCCAAACATCTCTGTCGACATTAGAGCG
CGCTCTTCTCCGGGGCGATGAGCAGACACTGCGAGCTATTCATCCCGATG
CAGCCGCCCTAGCCGCGGGTTACTACAACCTGTTCCTATCGCGGATGACA
AATGGCCACGAATCGTCCACCACACCAGATTTGTCTGTAGCCATAACTGC
CGAATGTATTCGAAGCGCTACAAGTGTCAACATGCGCAGTGACAGTCTGA
AAGCGGCCCTGATTGATGCCGCGAATGGAAGCACTCAATCATTGATTGCC
GCCTACTTGGCGGGTGTTGCCCTGTTTCAGTGTTTTGTGAGGGAGAACTG
GGCGGGGCCTATTACAAAACCGGCTTGCTCTGAGCAGAGCGAGCAGGCTG
GACTCTTTCTTGCCTTGGATGGAGAAGATGTGGCCTCACAGGCGAAGTGC
CTGCACTGGCTGCGTTCTGCCAGGTTTATATTAGTTGAACATGTCCAACA
ATTTGTAAGCGGTGGTGCAACTTTGACCCCCTGGTGGGCTGCTAGAGTTT
TGTTGGCCCACCAACATGTTCTCTCCAATCCTACCCCAACGATGCAGTAC
ACACTGTTTCGAATGTACAGTAGATTTCTTGGAAAGCATGTCTTGGAAAT
GTGTTACCGTTTTGAAACGGTGGAATGCATTGGCCAAAAGCACGGGGACA
ATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAATCAGATCTGTTGCCCGCACCCGTAGCCGAGGGAGATGACAA
TCTTGCAGACGAAGATGATGATTTTCTGCAAGTGCTTGACGAAGAGACGC
CGCAAGAAAGACAGTTGATGGTATTGGCGTTCATTGAATTAGCACAGGCG
CAGAGACTTTTTTATGACAGTGATGGTGCGCTCTCAAGCTTGAAAACTGC
GGAAAGGCTTGAGCAGATTGCCTTCCGGGTTACTGGTGAAATGGGTGTCC
GAACTAAGCATCAGATTAAACCTACTGCCCAGCTCATAACAAGAGCTTTT
GTTTTAAACGATACTTCGGACACTGTGATGGGTGATTTGGACAAAAGCAC
GTTCTGTTACAAATTTCCTGCACACCCTGAAAGAGTTGAAACTGATGTGA
ATGGCTCAGCTACATGGCCGATTACCACAGCTCTTCCACTTCCCGATAAT
ATTCAGGTTGACGATGATGACGTTCTTGGATACGTGAAGCTCACTAGTAG
AGCTGAAATTTTGCAGGAAGCTAAAAGTGAGAACATTGAAGTGGATGAAA
GTGATGAAGAACTTCTTAATCCAGAGAATCTTGGGGCCGAGCTGCGAAAT
CTTACCCCCTTACAGCAAGCACTAGCACTATGCCATGCAATTGTTATCCG
CGCCAGAAACGCTTCGCACATCCTTACAAAGGAGGAAATGTCGCCCTTCG
TCAACATGGTACTTGAGGGAGCAAAGAGCCCGCATGGCTCTGGTAGCGTG
CTGCAACTACGGGCGCAAATGCTGCGCGTGAGCCTTGAAAGAGAACGTGG
GCGTTTTCTAGAAAGATCCATGCATCAGATGGAAGAAATTGGGCGCTTTG
TTGATGATCCTCTTCAATCAATCGATGAAAGTCTCAGACATGCCGCCGCT
GCTGAACGAAATCTGTTGGTGTTTAGCTCCTCTTTGCCGCCGCGATGGGA
ACTGAAAAAGGAACTAGCTGTTTCGTTTGGCAAGATCGGCTTAGTTAGAT
CGACTTGA
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