Gvermi6712.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6712.t1
Unique NameGvermi6712.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2072107..2072478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_08805T0
PFAMsRab5ip
Max annot lvl4751|Fungi
GOsGO:0000045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0006914,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0022406,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0061919,GO:0070925,GO:0071840,GO:0072546,GO:0098796,GO:0098827,GO:0140056,GO:1905037,GO:1990456
Evalue1.65e-05
EggNOG OGsKOG4455@1|root,KOG4455@2759|Eukaryota,3A4AB@33154|Opisthokonta,3P4XG@4751|Fungi,1GXZ2@112252|Fungi incertae sedis
DescriptionRab5-interacting protein (Rab5ip)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6712Gvermi6712Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2072107..2072478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6712.t1Gvermi6712.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2072107..2072478 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6712.t1.start1Gvermi6712.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2072107..2072109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6712.t1.CDS1Gvermi6712.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2072107..2072174 +
Gvermi6712.t1.CDS2Gvermi6712.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2072232..2072478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6712.t1.exon1Gvermi6712.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2072107..2072174 +
Gvermi6712.t1.exon2Gvermi6712.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2072232..2072478 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6712.t1.intron1Gvermi6712.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2072175..2072231 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6712.t1.stop1Gvermi6712.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2072476..2072478 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6712.t1 ID=Gvermi6712.t1|Name=Gvermi6712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=105bp
MQSAKDIRLQSLYTANQQALLFIRIFGYAAGGAAAGMLELQGFEGLLFYI
LVSFTITIALLFKTFFAPGRYLRAPIATIMFFGTFGRNSILTYVLFWTML
FSFR*
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spliced messenger RNA

>Gvermi6712.t1 ID=Gvermi6712.t1|Name=Gvermi6712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp|location=Sequence derived from alignment at ScGOVlb_88:2072107..2072478+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCCGCAAAGGACATTAGGCTGCAAAGCCTGTACACTGCCAATCA
ACAGGCTCTACTCTTCATTCGAATATTTGGATATGCAGCCGGAGGAGCTG
CAGCGGGTATGCTCGAATTGCAAGGCTTCGAGGGATTGTTGTTTTACATA
CTTGTGTCCTTCACGATCACAATCGCCCTTCTATTCAAGACCTTTTTTGC
TCCAGGAAGATATCTGCGAGCCCCGATCGCCACAATTATGTTCTTCGGAA
CTTTCGGGCGGAACTCAATCCTTACTTATGTCCTCTTCTGGACCATGCTC
TTCTCCTTTCGATGA
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protein sequence of Gvermi6712.t1

>Gvermi6712.t1 ID=Gvermi6712.t1|Name=Gvermi6712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=105bp
MQSAKDIRLQSLYTANQQALLFIRIFGYAAGGAAAGMLELQGFEGLLFYI
LVSFTITIALLFKTFFAPGRYLRAPIATIMFFGTFGRNSILTYVLFWTML
FSFR*
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mRNA from alignment at ScGOVlb_88:2072107..2072478+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6712.t1 ID=Gvermi6712.t1|Name=Gvermi6712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp|location=Sequence derived from alignment at ScGOVlb_88:2072107..2072478+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTCCGCAAAGGACATTAGGCTGCAAAGCCTGTACACTGCCAATCA
ACAGGCTCTACTCTTCATGTACGTCTAGCTTTCAGAAATCTTTGCGCTCT
TCTGGCCCATCTAACTTTTTAGCAGTCGAATATTTGGATATGCAGCCGGA
GGAGCTGCAGCGGGTATGCTCGAATTGCAAGGCTTCGAGGGATTGTTGTT
TTACATACTTGTGTCCTTCACGATCACAATCGCCCTTCTATTCAAGACCT
TTTTTGCTCCAGGAAGATATCTGCGAGCCCCGATCGCCACAATTATGTTC
TTCGGAACTTTCGGGCGGAACTCAATCCTTACTTATGTCCTCTTCTGGAC
CATGCTCTTCTCCTTTCGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2072107..2072478+

>Gvermi6712.t1 ID=Gvermi6712.t1|Name=Gvermi6712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=315bp|location=Sequence derived from alignment at ScGOVlb_88:2072107..2072478+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTCCGCAAAGGACATTAGGCTGCAAAGCCTGTACACTGCCAATCA
ACAGGCTCTACTCTTCATTCGAATATTTGGATATGCAGCCGGAGGAGCTG
CAGCGGGTATGCTCGAATTGCAAGGCTTCGAGGGATTGTTGTTTTACATA
CTTGTGTCCTTCACGATCACAATCGCCCTTCTATTCAAGACCTTTTTTGC
TCCAGGAAGATATCTGCGAGCCCCGATCGCCACAATTATGTTCTTCGGAA
CTTTCGGGCGGAACTCAATCCTTACTTATGTCCTCTTCTGGACCATGCTC
TTCTCCTTTCGATGA
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