Gvermi6735.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6735.t1
Unique NameGvermi6735.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length397
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2118476..2119666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.K01381.1.p
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K03083
KEGG Pathwayko01521,ko04012,ko04062,ko04110,ko04150,ko04151,ko04310,ko04340,ko04341,ko04360,ko04390,ko04510,ko04550,ko04657,ko04660,ko04662,ko04711,ko04722,ko04728,ko04910,ko04916,ko04917,ko04919,ko04931,ko04932,ko04934,ko05010,ko05160,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05210,ko05213,ko05215,ko05217,ko05224,ko05225,ko05226,map01521,map04012,map04062,map04110,map04150,map04151,map04310,map04340,map04341,map04360,map04390,map04510,map04550,map04657,map04660,map04662,map04711,map04722,map04728,map04910,map04916,map04917,map04919,map04931,map04932,map04934,map05010,map05160,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05210,map05213,map05215,map05217,map05224,map05225,map05226
KEGG ModuleM00677
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046777,GO:0050896,GO:0071704,GO:0140096,GO:1901564
Evalue3.07e-167
EggNOG OGsCOG0515@1|root,KOG0658@2759|Eukaryota,37IWS@33090|Viridiplantae,3G7U0@35493|Streptophyta,44FJI@71274|asterids
EC2.7.11.26
DescriptionBelongs to the protein kinase superfamily
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6735Gvermi6735Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2118476..2119666 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6735.t1.stop1Gvermi6735.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2118476..2118478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6735.t1.CDS1Gvermi6735.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2118476..2119666 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6735.t1.exon1Gvermi6735.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2118476..2119666 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6735.t1.start1Gvermi6735.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2119664..2119666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6735.t1Gvermi6735.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2118476..2119666 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6735.t1 ID=Gvermi6735.t1|Name=Gvermi6735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=397bp
MQPNQPDQQPPAAPPNPPPAQQSYHSSNPSARPAPSAAAPRPSASSSATP
KESISYSAARVIGNGSFGVVFQATVRETGETVAIKKVLQDKRYKNRELQI
MRMIDHTNVCQLKHCFYSSGDKPDEVYLNLVLEFVPETVYRISKHYSKVK
TPIPTIYIKLYIYQLLRALAYIHSLGICHRDIKPQNLLLNPSTQVLKLCD
FGSAKVLVREEPNISYICSRYYRAPELIFGATDYFPAIDVWSTGCVMAEL
MLGHPLFPGESGVDQLVEIIKVLGTPTKEEIMSMNRNYTEFKFPQIKSLS
WTKVFRHRTSTDAIDLVSKMLQYSPTMRLKPMQGLAHPYFDEIRSSTCKL
PNGKPLPPLFNFSKHEFHHAADLASRILPHSVYEELHKKYGDPVRQ*
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spliced messenger RNA

>Gvermi6735.t1 ID=Gvermi6735.t1|Name=Gvermi6735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at ScGOVlb_88:2118476..2119666- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCAACCAGCCCGACCAGCAACCGCCCGCAGCTCCCCCCAATCC
CCCCCCCGCGCAGCAATCGTACCATTCATCCAACCCCTCTGCCAGGCCCG
CCCCCTCCGCCGCCGCCCCCCGCCCCTCCGCCTCCTCCTCCGCCACCCCC
AAGGAGTCCATCAGTTACAGCGCCGCCCGCGTCATCGGCAATGGATCCTT
CGGCGTTGTCTTCCAGGCCACCGTGCGCGAAACCGGCGAAACCGTCGCCA
TCAAAAAGGTCTTGCAGGACAAGCGCTACAAGAACCGCGAGCTGCAAATT
ATGCGAATGATTGATCACACAAACGTCTGCCAACTCAAGCACTGTTTTTA
CTCATCCGGGGACAAGCCCGACGAAGTCTACCTCAATCTCGTCCTCGAAT
TCGTCCCAGAGACCGTATACAGAATCTCCAAGCACTACTCCAAGGTCAAG
ACACCCATCCCCACAATCTACATCAAGTTGTATATTTACCAGCTATTGCG
CGCCTTGGCTTACATTCACTCGCTGGGCATCTGCCACCGCGATATCAAGC
CGCAAAACCTGCTGCTCAACCCCAGCACGCAGGTGCTCAAGTTGTGTGAC
TTCGGTTCAGCAAAGGTGCTTGTCCGCGAGGAACCCAACATCAGCTACAT
CTGCTCCCGTTACTACCGCGCCCCCGAGCTCATCTTCGGCGCCACCGACT
ACTTCCCAGCCATCGACGTGTGGTCCACTGGCTGTGTCATGGCCGAACTA
ATGCTGGGGCACCCACTGTTCCCCGGCGAATCTGGTGTGGATCAGCTCGT
CGAAATCATCAAGGTTTTGGGCACACCCACCAAAGAGGAGATCATGTCTA
TGAATCGCAATTACACAGAGTTCAAGTTCCCGCAGATCAAGTCGTTGTCT
TGGACAAAGGTGTTCCGCCATCGCACCAGCACAGACGCTATTGACCTTGT
ATCCAAAATGCTGCAGTACTCGCCCACGATGAGACTGAAACCCATGCAAG
GCCTGGCTCACCCCTACTTTGATGAAATTCGTTCATCCACGTGCAAGTTG
CCCAACGGCAAACCGCTTCCACCGCTGTTTAACTTTTCAAAACATGAGTT
TCATCATGCTGCCGATTTGGCTTCACGTATTTTGCCGCACAGTGTTTATG
AAGAGTTGCATAAAAAGTATGGCGATCCTGTCAGACAGTGA
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protein sequence of Gvermi6735.t1

>Gvermi6735.t1 ID=Gvermi6735.t1|Name=Gvermi6735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=397bp
MQPNQPDQQPPAAPPNPPPAQQSYHSSNPSARPAPSAAAPRPSASSSATP
KESISYSAARVIGNGSFGVVFQATVRETGETVAIKKVLQDKRYKNRELQI
MRMIDHTNVCQLKHCFYSSGDKPDEVYLNLVLEFVPETVYRISKHYSKVK
TPIPTIYIKLYIYQLLRALAYIHSLGICHRDIKPQNLLLNPSTQVLKLCD
FGSAKVLVREEPNISYICSRYYRAPELIFGATDYFPAIDVWSTGCVMAEL
MLGHPLFPGESGVDQLVEIIKVLGTPTKEEIMSMNRNYTEFKFPQIKSLS
WTKVFRHRTSTDAIDLVSKMLQYSPTMRLKPMQGLAHPYFDEIRSSTCKL
PNGKPLPPLFNFSKHEFHHAADLASRILPHSVYEELHKKYGDPVRQ*
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mRNA from alignment at ScGOVlb_88:2118476..2119666-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6735.t1 ID=Gvermi6735.t1|Name=Gvermi6735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at ScGOVlb_88:2118476..2119666- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCAACCAGCCCGACCAGCAACCGCCCGCAGCTCCCCCCAATCC
CCCCCCCGCGCAGCAATCGTACCATTCATCCAACCCCTCTGCCAGGCCCG
CCCCCTCCGCCGCCGCCCCCCGCCCCTCCGCCTCCTCCTCCGCCACCCCC
AAGGAGTCCATCAGTTACAGCGCCGCCCGCGTCATCGGCAATGGATCCTT
CGGCGTTGTCTTCCAGGCCACCGTGCGCGAAACCGGCGAAACCGTCGCCA
TCAAAAAGGTCTTGCAGGACAAGCGCTACAAGAACCGCGAGCTGCAAATT
ATGCGAATGATTGATCACACAAACGTCTGCCAACTCAAGCACTGTTTTTA
CTCATCCGGGGACAAGCCCGACGAAGTCTACCTCAATCTCGTCCTCGAAT
TCGTCCCAGAGACCGTATACAGAATCTCCAAGCACTACTCCAAGGTCAAG
ACACCCATCCCCACAATCTACATCAAGTTGTATATTTACCAGCTATTGCG
CGCCTTGGCTTACATTCACTCGCTGGGCATCTGCCACCGCGATATCAAGC
CGCAAAACCTGCTGCTCAACCCCAGCACGCAGGTGCTCAAGTTGTGTGAC
TTCGGTTCAGCAAAGGTGCTTGTCCGCGAGGAACCCAACATCAGCTACAT
CTGCTCCCGTTACTACCGCGCCCCCGAGCTCATCTTCGGCGCCACCGACT
ACTTCCCAGCCATCGACGTGTGGTCCACTGGCTGTGTCATGGCCGAACTA
ATGCTGGGGCACCCACTGTTCCCCGGCGAATCTGGTGTGGATCAGCTCGT
CGAAATCATCAAGGTTTTGGGCACACCCACCAAAGAGGAGATCATGTCTA
TGAATCGCAATTACACAGAGTTCAAGTTCCCGCAGATCAAGTCGTTGTCT
TGGACAAAGGTGTTCCGCCATCGCACCAGCACAGACGCTATTGACCTTGT
ATCCAAAATGCTGCAGTACTCGCCCACGATGAGACTGAAACCCATGCAAG
GCCTGGCTCACCCCTACTTTGATGAAATTCGTTCATCCACGTGCAAGTTG
CCCAACGGCAAACCGCTTCCACCGCTGTTTAACTTTTCAAAACATGAGTT
TCATCATGCTGCCGATTTGGCTTCACGTATTTTGCCGCACAGTGTTTATG
AAGAGTTGCATAAAAAGTATGGCGATCCTGTCAGACAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2118476..2119666-

>Gvermi6735.t1 ID=Gvermi6735.t1|Name=Gvermi6735.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1191bp|location=Sequence derived from alignment at ScGOVlb_88:2118476..2119666- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCAACCAGCCCGACCAGCAACCGCCCGCAGCTCCCCCCAATCC
CCCCCCCGCGCAGCAATCGTACCATTCATCCAACCCCTCTGCCAGGCCCG
CCCCCTCCGCCGCCGCCCCCCGCCCCTCCGCCTCCTCCTCCGCCACCCCC
AAGGAGTCCATCAGTTACAGCGCCGCCCGCGTCATCGGCAATGGATCCTT
CGGCGTTGTCTTCCAGGCCACCGTGCGCGAAACCGGCGAAACCGTCGCCA
TCAAAAAGGTCTTGCAGGACAAGCGCTACAAGAACCGCGAGCTGCAAATT
ATGCGAATGATTGATCACACAAACGTCTGCCAACTCAAGCACTGTTTTTA
CTCATCCGGGGACAAGCCCGACGAAGTCTACCTCAATCTCGTCCTCGAAT
TCGTCCCAGAGACCGTATACAGAATCTCCAAGCACTACTCCAAGGTCAAG
ACACCCATCCCCACAATCTACATCAAGTTGTATATTTACCAGCTATTGCG
CGCCTTGGCTTACATTCACTCGCTGGGCATCTGCCACCGCGATATCAAGC
CGCAAAACCTGCTGCTCAACCCCAGCACGCAGGTGCTCAAGTTGTGTGAC
TTCGGTTCAGCAAAGGTGCTTGTCCGCGAGGAACCCAACATCAGCTACAT
CTGCTCCCGTTACTACCGCGCCCCCGAGCTCATCTTCGGCGCCACCGACT
ACTTCCCAGCCATCGACGTGTGGTCCACTGGCTGTGTCATGGCCGAACTA
ATGCTGGGGCACCCACTGTTCCCCGGCGAATCTGGTGTGGATCAGCTCGT
CGAAATCATCAAGGTTTTGGGCACACCCACCAAAGAGGAGATCATGTCTA
TGAATCGCAATTACACAGAGTTCAAGTTCCCGCAGATCAAGTCGTTGTCT
TGGACAAAGGTGTTCCGCCATCGCACCAGCACAGACGCTATTGACCTTGT
ATCCAAAATGCTGCAGTACTCGCCCACGATGAGACTGAAACCCATGCAAG
GCCTGGCTCACCCCTACTTTGATGAAATTCGTTCATCCACGTGCAAGTTG
CCCAACGGCAAACCGCTTCCACCGCTGTTTAACTTTTCAAAACATGAGTT
TCATCATGCTGCCGATTTGGCTTCACGTATTTTGCCGCACAGTGTTTATG
AAGAGTTGCATAAAAAGTATGGCGATCCTGTCAGACAGTGA
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