Gvermi6717.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6717.t1
Unique NameGvermi6717.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2083017..2083754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr46182
PFAMsACT_7
Max annot lvl2759|Eukaryota
Evalue1.28e-09
EggNOG OGsCOG3603@1|root,2S7H6@2759|Eukaryota
DescriptionACT domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6717Gvermi6717Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2083017..2083754 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6717.t1.stop1Gvermi6717.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2083017..2083019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6717.t1.CDS1Gvermi6717.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2083017..2083754 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6717.t1.exon1Gvermi6717.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2083017..2083754 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6717.t1.start1Gvermi6717.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2083752..2083754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6717.t1Gvermi6717.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2083017..2083754 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6717.t1 ID=Gvermi6717.t1|Name=Gvermi6717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=246bp
MNCIRADPSFASLGLVFGLVLAGMTPPPSALINFYLKFRELLQEGLKYAQ
VPESSCYMYEPDMIHTTIATFRSFLRPPPSNPELFVSEWKGLLLRASRRS
GWPQPGTYVLTLHEAKVQNNGVGTFLYHDRLRVVDRMRECIRAEMRENKS
QTSLRYIECIRGDVKIPNIIHSTILRWRRSPDISVARLQNIFSEAFVLTK
ATEHPVDIPLTTVSLLREWRPYMMAKTCVVQLWPTKDEDTTESTF*
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spliced messenger RNA

>Gvermi6717.t1 ID=Gvermi6717.t1|Name=Gvermi6717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_88:2083017..2083754- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCATTCGCGCAGACCCCTCCTTCGCGAGTCTTGGACTTGTTTT
CGGCCTTGTGTTGGCTGGCATGACTCCGCCACCATCGGCCCTCATAAACT
TCTATTTGAAGTTTCGTGAGCTTCTGCAAGAGGGATTGAAATATGCCCAA
GTCCCGGAATCCTCCTGTTACATGTACGAGCCAGACATGATTCACACTAC
TATCGCAACTTTTCGATCTTTTCTGAGGCCTCCACCTTCAAACCCAGAGC
TTTTTGTTAGCGAATGGAAGGGGCTTTTGTTACGGGCATCTCGTCGGTCG
GGTTGGCCCCAGCCAGGAACTTACGTATTAACGCTTCATGAGGCAAAGGT
ACAAAACAATGGGGTAGGCACGTTTCTATACCACGACAGATTACGTGTCG
TAGACAGAATGAGAGAATGCATTCGAGCGGAGATGAGAGAAAACAAATCA
CAGACAAGCTTGCGATACATAGAATGCATCCGTGGGGACGTGAAGATCCC
AAACATCATACATTCAACAATATTGCGATGGAGAAGGTCACCAGACATCT
CCGTGGCGCGATTACAGAACATTTTTTCTGAAGCTTTTGTTCTGACAAAG
GCCACTGAGCACCCTGTCGACATTCCCTTAACGACAGTTTCCTTGCTTCG
CGAGTGGAGACCCTACATGATGGCGAAGACGTGCGTGGTGCAGCTATGGC
CAACAAAAGATGAAGATACTACTGAATCAACTTTTTAA
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protein sequence of Gvermi6717.t1

>Gvermi6717.t1 ID=Gvermi6717.t1|Name=Gvermi6717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=246bp
MNCIRADPSFASLGLVFGLVLAGMTPPPSALINFYLKFRELLQEGLKYAQ
VPESSCYMYEPDMIHTTIATFRSFLRPPPSNPELFVSEWKGLLLRASRRS
GWPQPGTYVLTLHEAKVQNNGVGTFLYHDRLRVVDRMRECIRAEMRENKS
QTSLRYIECIRGDVKIPNIIHSTILRWRRSPDISVARLQNIFSEAFVLTK
ATEHPVDIPLTTVSLLREWRPYMMAKTCVVQLWPTKDEDTTESTF*
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mRNA from alignment at ScGOVlb_88:2083017..2083754-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6717.t1 ID=Gvermi6717.t1|Name=Gvermi6717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_88:2083017..2083754- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCATTCGCGCAGACCCCTCCTTCGCGAGTCTTGGACTTGTTTT
CGGCCTTGTGTTGGCTGGCATGACTCCGCCACCATCGGCCCTCATAAACT
TCTATTTGAAGTTTCGTGAGCTTCTGCAAGAGGGATTGAAATATGCCCAA
GTCCCGGAATCCTCCTGTTACATGTACGAGCCAGACATGATTCACACTAC
TATCGCAACTTTTCGATCTTTTCTGAGGCCTCCACCTTCAAACCCAGAGC
TTTTTGTTAGCGAATGGAAGGGGCTTTTGTTACGGGCATCTCGTCGGTCG
GGTTGGCCCCAGCCAGGAACTTACGTATTAACGCTTCATGAGGCAAAGGT
ACAAAACAATGGGGTAGGCACGTTTCTATACCACGACAGATTACGTGTCG
TAGACAGAATGAGAGAATGCATTCGAGCGGAGATGAGAGAAAACAAATCA
CAGACAAGCTTGCGATACATAGAATGCATCCGTGGGGACGTGAAGATCCC
AAACATCATACATTCAACAATATTGCGATGGAGAAGGTCACCAGACATCT
CCGTGGCGCGATTACAGAACATTTTTTCTGAAGCTTTTGTTCTGACAAAG
GCCACTGAGCACCCTGTCGACATTCCCTTAACGACAGTTTCCTTGCTTCG
CGAGTGGAGACCCTACATGATGGCGAAGACGTGCGTGGTGCAGCTATGGC
CAACAAAAGATGAAGATACTACTGAATCAACTTTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2083017..2083754-

>Gvermi6717.t1 ID=Gvermi6717.t1|Name=Gvermi6717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=738bp|location=Sequence derived from alignment at ScGOVlb_88:2083017..2083754- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCATTCGCGCAGACCCCTCCTTCGCGAGTCTTGGACTTGTTTT
CGGCCTTGTGTTGGCTGGCATGACTCCGCCACCATCGGCCCTCATAAACT
TCTATTTGAAGTTTCGTGAGCTTCTGCAAGAGGGATTGAAATATGCCCAA
GTCCCGGAATCCTCCTGTTACATGTACGAGCCAGACATGATTCACACTAC
TATCGCAACTTTTCGATCTTTTCTGAGGCCTCCACCTTCAAACCCAGAGC
TTTTTGTTAGCGAATGGAAGGGGCTTTTGTTACGGGCATCTCGTCGGTCG
GGTTGGCCCCAGCCAGGAACTTACGTATTAACGCTTCATGAGGCAAAGGT
ACAAAACAATGGGGTAGGCACGTTTCTATACCACGACAGATTACGTGTCG
TAGACAGAATGAGAGAATGCATTCGAGCGGAGATGAGAGAAAACAAATCA
CAGACAAGCTTGCGATACATAGAATGCATCCGTGGGGACGTGAAGATCCC
AAACATCATACATTCAACAATATTGCGATGGAGAAGGTCACCAGACATCT
CCGTGGCGCGATTACAGAACATTTTTTCTGAAGCTTTTGTTCTGACAAAG
GCCACTGAGCACCCTGTCGACATTCCCTTAACGACAGTTTCCTTGCTTCG
CGAGTGGAGACCCTACATGATGGCGAAGACGTGCGTGGTGCAGCTATGGC
CAACAAAAGATGAAGATACTACTGAATCAACTTTTTAA
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