Gvermi6727.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6727.t1
Unique NameGvermi6727.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length361
Homology
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BLAST of Gvermi6727.t1 vs. uniprot
Match: A0A2V3J3J9_9FLOR (THO complex subunit 6-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3J9_9FLOR)

HSP 1 Score: 452 bits (1164), Expect = 1.350e-156
Identity = 223/360 (61.94%), Postives = 273/360 (75.83%), Query Frame = 0 
Query:    1 MAFFDTDGYKRHLRRRISDSTTLVFALAFDPSGSFLAAGTTNGLLKIFSLPSIALSCYNSPLTPQKCSFQDLSRHGSINGIEITKRHLYVATDSGLLCFEWKRLINPILGGGSERYPIPVVLLGGVQINAVITLGHQSQATSVVAATGEGALIKVVDGGKKLLQIGETIAKDAYPHCVAGNTDPNVFLAGCNDCKIRQYDTRKPMPLVDTYSLKHTNLSPVKAYISSLAMHGDSNFVMIADSGKNLTSFHLPSASTVCSARIPFCPQATVFADGYFYCGGSDITSTGSSSAESCIQRCDVSFQTFDSLASSTSSVYAMAASSAGAVAAGGHSLMKSDEEELAERADVYICPPVRSFSVFV 360
            MA FD + YK HLR+R++DSTTLVFAL+FD SGSFL AGT NGLLKIFSL +IALSCY SP     C+ +DLSRHGSING+ +T++ LYVATD+GLLCF WK LI PI G     + +P V+L G QINAVI LG + + +SVVAATG GA + V DGGKK  QIG++I + AYPHC+ G+ D N+FLAGCND  IRQ+D R P P+V  YS++       K YISSLA++ DS F MIADS  N+TSFHLP++STV S R PF PQA VFADGYFYCGGSDI +   S    C++RCDV  +    ++SSTSS+YA+AAS  GA+AAGGHSL K++++ELAERADVY+CPP+RSFSVFV
Sbjct:    1 MALFDIEAYKSHLRKRVADSTTLVFALSFDTSGSFLVAGTINGLLKIFSLSAIALSCYVSPSQSHLCAVRDLSRHGSINGLAVTEQELYVATDNGLLCFSWKHLIAPISGDQPNVHVVPNVILAGTQINAVIKLGQKKRTSSVVAATGTGAFMIVSDGGKKFHQIGDSIGEAAYPHCITGDADSNIFLAGCNDYMIRQFDVRLPKPIVHVYSVEQQRRGRFKPYISSLALNSDSTFAMIADSNHNITSFHLPTSSTVSSLRAPFSPQAIVFADGYFYCGGSDINNGDKSPDSRCLRRCDVRCEDLHVVSSSTSSIYALAASPVGAIAAGGHSLQKTNDQELAERADVYLCPPIRSFSVFV 360
The following BLAST results are available for this feature:
BLAST of Gvermi6727.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3J9_9FLOR1.350e-15661.94THO complex subunit 6-like n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 159..200
e-value: 17.0
score: 9.3
coord: 10..49
e-value: 0.069
score: 22.3
coord: 206..250
e-value: 150.0
score: 3.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..328
e-value: 4.6E-13
score: 50.8
IPR042626THO complex subunit 6PANTHERPTHR44411THO COMPLEX SUBUNIT 6 HOMOLOGcoord: 7..332
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..360
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 30..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..268

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2103719..2104868 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6727.t1Gvermi6727.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2103719..2104868 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6727.t1 ID=Gvermi6727.t1|Name=Gvermi6727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=361bp
MAFFDTDGYKRHLRRRISDSTTLVFALAFDPSGSFLAAGTTNGLLKIFSL
PSIALSCYNSPLTPQKCSFQDLSRHGSINGIEITKRHLYVATDSGLLCFE
WKRLINPILGGGSERYPIPVVLLGGVQINAVITLGHQSQATSVVAATGEG
ALIKVVDGGKKLLQIGETIAKDAYPHCVAGNTDPNVFLAGCNDCKIRQYD
TRKPMPLVDTYSLKHTNLSPVKAYISSLAMHGDSNFVMIADSGKNLTSFH
LPSASTVCSARIPFCPQATVFADGYFYCGGSDITSTGSSSAESCIQRCDV
SFQTFDSLASSTSSVYAMAASSAGAVAAGGHSLMKSDEEELAERADVYIC
PPVRSFSVFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR042626THOC6
IPR036322WD40_repeat_dom_sf