Gvermi6747.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6747.t1
Unique NameGvermi6747.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2143419..2144867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog518766.Rmar_0038
PFAMsCupin_4
Max annot lvl976|Bacteroidetes
KEGG koko:K18850
Evalue1.21e-68
EggNOG OGsCOG2850@1|root,COG2850@2|Bacteria,4PEBP@976|Bacteroidetes,1FIRX@1100069|Bacteroidetes Order II. Incertae sedis
EC1.14.11.47
DescriptionA domain family that is part of the cupin metalloenzyme superfamily.
COG categoryS
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6747Gvermi6747Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2143419..2144867 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6747.t1.stop1Gvermi6747.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2143419..2143421 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6747.t1.CDS1Gvermi6747.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2143419..2144867 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6747.t1.exon1Gvermi6747.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2143419..2144867 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6747.t1.start1Gvermi6747.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2144865..2144867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6747.t1Gvermi6747.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2143419..2144867 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6747.t1 ID=Gvermi6747.t1|Name=Gvermi6747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp
MTFLTAPAEVISTHWAATQLKKKQRLAHQRFSRACEVVRHAFINPVLPSP
SRATFSSNTVLVCTIGRNPLLTSREAQHHFLRTVWGKKPQLLRNLLPVPS
LTPDELAGLSCDLPSRIIRGRGDGETEGPYTLERGPFAPDHFTTLPEMYW
TLLVDRVNQSVPQVADLLDNFAFLPNWRFDDVMISYAPKGGSVGPHVDNY
DVFLLQTSGTRLWKTAYTPISTHDEQLVPDLDVRILRGGFKPDDQWVLEP
GDALYVPPRFPHHGISLSDDCVTYSIGFRAPSIASLMSGWMANVVQDQRL
WDQLLHESGEHMSENVSDPARLTDETVQIAFDTLYSKFRGETALKRQFRR
WFATHISQLGETNGDEETPDEDEVQQNFHSITASTEVENSLTIRQKEGSV
FIYTCDAENCSMYIDGEEWGVKSVSVARFICGRRSRKASEYAELCRTDPS
FAQLLQNLLREGHLYVNDGLYSDEAEESMDAQ*
back to top

spliced messenger RNA

>Gvermi6747.t1 ID=Gvermi6747.t1|Name=Gvermi6747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_88:2143419..2144867- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTTCTCACAGCACCGGCTGAAGTCATCAGCACCCACTGGGCTGC
CACCCAACTCAAGAAAAAGCAACGTCTTGCGCATCAGCGGTTTTCACGAG
CTTGCGAAGTAGTGCGGCACGCCTTTATCAATCCCGTCCTACCCTCGCCA
TCGAGAGCCACATTTTCCTCCAACACAGTCCTCGTATGCACAATAGGAAG
AAACCCCTTGCTTACGTCGCGCGAAGCTCAACACCACTTTCTAAGAACCG
TATGGGGAAAGAAGCCTCAGCTGCTACGCAATCTGCTCCCAGTGCCCTCT
CTAACTCCCGATGAGCTTGCGGGATTATCGTGCGATTTACCCTCCCGGAT
AATCCGTGGCCGTGGCGATGGTGAGACGGAAGGGCCGTACACATTGGAAC
GTGGCCCATTCGCGCCAGATCATTTCACTACCCTTCCAGAGATGTATTGG
ACCCTATTGGTCGATCGTGTGAATCAATCCGTCCCACAAGTTGCCGATCT
GCTCGATAACTTCGCTTTTTTGCCCAACTGGCGCTTTGATGACGTCATGA
TCTCATATGCCCCCAAAGGCGGCAGTGTCGGTCCACATGTTGACAACTAT
GACGTATTTCTTCTTCAAACATCTGGAACTAGACTGTGGAAAACAGCATA
CACTCCGATTAGTACTCATGATGAACAGCTGGTACCTGACTTAGATGTTC
GGATATTGCGAGGCGGCTTCAAACCAGATGACCAATGGGTCTTGGAACCT
GGGGATGCGCTTTACGTTCCCCCTCGTTTCCCTCATCATGGAATCAGCCT
CAGCGACGATTGCGTCACGTATAGTATTGGATTTCGAGCGCCCTCCATCG
CGAGCCTAATGTCAGGATGGATGGCAAACGTTGTGCAGGACCAACGCTTA
TGGGATCAGCTTCTACACGAAAGTGGCGAACACATGTCAGAAAATGTGTC
GGATCCGGCGAGACTCACAGATGAAACTGTTCAGATCGCGTTTGATACAT
TGTATTCCAAGTTTCGAGGAGAAACAGCGCTTAAACGACAGTTTCGCCGA
TGGTTTGCTACACATATTAGTCAGCTTGGCGAGACAAACGGAGATGAAGA
GACACCCGATGAGGACGAAGTGCAACAAAATTTTCATTCTATCACAGCCT
CCACAGAAGTTGAGAATAGTCTAACTATACGACAGAAAGAGGGATCTGTA
TTCATTTACACATGTGATGCAGAAAATTGTTCTATGTACATCGATGGAGA
AGAATGGGGCGTGAAAAGTGTTAGTGTAGCGAGATTCATTTGCGGGCGAC
GAAGTCGAAAGGCTTCCGAATACGCAGAACTCTGTCGCACAGACCCATCG
TTCGCGCAACTTCTGCAAAACTTGCTACGTGAGGGTCACCTCTATGTGAA
CGACGGTTTGTATTCCGATGAAGCAGAAGAAAGTATGGATGCACAATAG
back to top

protein sequence of Gvermi6747.t1

>Gvermi6747.t1 ID=Gvermi6747.t1|Name=Gvermi6747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=483bp
MTFLTAPAEVISTHWAATQLKKKQRLAHQRFSRACEVVRHAFINPVLPSP
SRATFSSNTVLVCTIGRNPLLTSREAQHHFLRTVWGKKPQLLRNLLPVPS
LTPDELAGLSCDLPSRIIRGRGDGETEGPYTLERGPFAPDHFTTLPEMYW
TLLVDRVNQSVPQVADLLDNFAFLPNWRFDDVMISYAPKGGSVGPHVDNY
DVFLLQTSGTRLWKTAYTPISTHDEQLVPDLDVRILRGGFKPDDQWVLEP
GDALYVPPRFPHHGISLSDDCVTYSIGFRAPSIASLMSGWMANVVQDQRL
WDQLLHESGEHMSENVSDPARLTDETVQIAFDTLYSKFRGETALKRQFRR
WFATHISQLGETNGDEETPDEDEVQQNFHSITASTEVENSLTIRQKEGSV
FIYTCDAENCSMYIDGEEWGVKSVSVARFICGRRSRKASEYAELCRTDPS
FAQLLQNLLREGHLYVNDGLYSDEAEESMDAQ*
back to top

mRNA from alignment at ScGOVlb_88:2143419..2144867-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6747.t1 ID=Gvermi6747.t1|Name=Gvermi6747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_88:2143419..2144867- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATTTCTCACAGCACCGGCTGAAGTCATCAGCACCCACTGGGCTGC
CACCCAACTCAAGAAAAAGCAACGTCTTGCGCATCAGCGGTTTTCACGAG
CTTGCGAAGTAGTGCGGCACGCCTTTATCAATCCCGTCCTACCCTCGCCA
TCGAGAGCCACATTTTCCTCCAACACAGTCCTCGTATGCACAATAGGAAG
AAACCCCTTGCTTACGTCGCGCGAAGCTCAACACCACTTTCTAAGAACCG
TATGGGGAAAGAAGCCTCAGCTGCTACGCAATCTGCTCCCAGTGCCCTCT
CTAACTCCCGATGAGCTTGCGGGATTATCGTGCGATTTACCCTCCCGGAT
AATCCGTGGCCGTGGCGATGGTGAGACGGAAGGGCCGTACACATTGGAAC
GTGGCCCATTCGCGCCAGATCATTTCACTACCCTTCCAGAGATGTATTGG
ACCCTATTGGTCGATCGTGTGAATCAATCCGTCCCACAAGTTGCCGATCT
GCTCGATAACTTCGCTTTTTTGCCCAACTGGCGCTTTGATGACGTCATGA
TCTCATATGCCCCCAAAGGCGGCAGTGTCGGTCCACATGTTGACAACTAT
GACGTATTTCTTCTTCAAACATCTGGAACTAGACTGTGGAAAACAGCATA
CACTCCGATTAGTACTCATGATGAACAGCTGGTACCTGACTTAGATGTTC
GGATATTGCGAGGCGGCTTCAAACCAGATGACCAATGGGTCTTGGAACCT
GGGGATGCGCTTTACGTTCCCCCTCGTTTCCCTCATCATGGAATCAGCCT
CAGCGACGATTGCGTCACGTATAGTATTGGATTTCGAGCGCCCTCCATCG
CGAGCCTAATGTCAGGATGGATGGCAAACGTTGTGCAGGACCAACGCTTA
TGGGATCAGCTTCTACACGAAAGTGGCGAACACATGTCAGAAAATGTGTC
GGATCCGGCGAGACTCACAGATGAAACTGTTCAGATCGCGTTTGATACAT
TGTATTCCAAGTTTCGAGGAGAAACAGCGCTTAAACGACAGTTTCGCCGA
TGGTTTGCTACACATATTAGTCAGCTTGGCGAGACAAACGGAGATGAAGA
GACACCCGATGAGGACGAAGTGCAACAAAATTTTCATTCTATCACAGCCT
CCACAGAAGTTGAGAATAGTCTAACTATACGACAGAAAGAGGGATCTGTA
TTCATTTACACATGTGATGCAGAAAATTGTTCTATGTACATCGATGGAGA
AGAATGGGGCGTGAAAAGTGTTAGTGTAGCGAGATTCATTTGCGGGCGAC
GAAGTCGAAAGGCTTCCGAATACGCAGAACTCTGTCGCACAGACCCATCG
TTCGCGCAACTTCTGCAAAACTTGCTACGTGAGGGTCACCTCTATGTGAA
CGACGGTTTGTATTCCGATGAAGCAGAAGAAAGTATGGATGCACAATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2143419..2144867-

>Gvermi6747.t1 ID=Gvermi6747.t1|Name=Gvermi6747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1449bp|location=Sequence derived from alignment at ScGOVlb_88:2143419..2144867- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATTTCTCACAGCACCGGCTGAAGTCATCAGCACCCACTGGGCTGC
CACCCAACTCAAGAAAAAGCAACGTCTTGCGCATCAGCGGTTTTCACGAG
CTTGCGAAGTAGTGCGGCACGCCTTTATCAATCCCGTCCTACCCTCGCCA
TCGAGAGCCACATTTTCCTCCAACACAGTCCTCGTATGCACAATAGGAAG
AAACCCCTTGCTTACGTCGCGCGAAGCTCAACACCACTTTCTAAGAACCG
TATGGGGAAAGAAGCCTCAGCTGCTACGCAATCTGCTCCCAGTGCCCTCT
CTAACTCCCGATGAGCTTGCGGGATTATCGTGCGATTTACCCTCCCGGAT
AATCCGTGGCCGTGGCGATGGTGAGACGGAAGGGCCGTACACATTGGAAC
GTGGCCCATTCGCGCCAGATCATTTCACTACCCTTCCAGAGATGTATTGG
ACCCTATTGGTCGATCGTGTGAATCAATCCGTCCCACAAGTTGCCGATCT
GCTCGATAACTTCGCTTTTTTGCCCAACTGGCGCTTTGATGACGTCATGA
TCTCATATGCCCCCAAAGGCGGCAGTGTCGGTCCACATGTTGACAACTAT
GACGTATTTCTTCTTCAAACATCTGGAACTAGACTGTGGAAAACAGCATA
CACTCCGATTAGTACTCATGATGAACAGCTGGTACCTGACTTAGATGTTC
GGATATTGCGAGGCGGCTTCAAACCAGATGACCAATGGGTCTTGGAACCT
GGGGATGCGCTTTACGTTCCCCCTCGTTTCCCTCATCATGGAATCAGCCT
CAGCGACGATTGCGTCACGTATAGTATTGGATTTCGAGCGCCCTCCATCG
CGAGCCTAATGTCAGGATGGATGGCAAACGTTGTGCAGGACCAACGCTTA
TGGGATCAGCTTCTACACGAAAGTGGCGAACACATGTCAGAAAATGTGTC
GGATCCGGCGAGACTCACAGATGAAACTGTTCAGATCGCGTTTGATACAT
TGTATTCCAAGTTTCGAGGAGAAACAGCGCTTAAACGACAGTTTCGCCGA
TGGTTTGCTACACATATTAGTCAGCTTGGCGAGACAAACGGAGATGAAGA
GACACCCGATGAGGACGAAGTGCAACAAAATTTTCATTCTATCACAGCCT
CCACAGAAGTTGAGAATAGTCTAACTATACGACAGAAAGAGGGATCTGTA
TTCATTTACACATGTGATGCAGAAAATTGTTCTATGTACATCGATGGAGA
AGAATGGGGCGTGAAAAGTGTTAGTGTAGCGAGATTCATTTGCGGGCGAC
GAAGTCGAAAGGCTTCCGAATACGCAGAACTCTGTCGCACAGACCCATCG
TTCGCGCAACTTCTGCAAAACTTGCTACGTGAGGGTCACCTCTATGTGAA
CGACGGTTTGTATTCCGATGAAGCAGAAGAAAGTATGGATGCACAATAG
back to top