Gvermi6742.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6742.t1
Unique NameGvermi6742.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2136078..2137388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LER1
PFAMsEPSP_synthase
Max annot lvl2759|Eukaryota
KEGG rclassRC00350
KEGG koko:K00800,ko:K10669
KEGG ReactionR03460
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:1901576
Evalue1.7e-190
EggNOG OGsCOG0169@1|root,KOG0692@2759|Eukaryota
EC2.5.1.19,2.7.1.160
Descriptionshikimate 3-dehydrogenase (NADP ) activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6742Gvermi6742Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2136078..2137388 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6742.t1.start1Gvermi6742.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2136078..2136080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6742.t1.CDS1Gvermi6742.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2136078..2137388 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6742.t1.exon1Gvermi6742.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2136078..2137388 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6742.t1.stop1Gvermi6742.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2137386..2137388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6742.t1Gvermi6742.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2136078..2137388 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6742.t1 ID=Gvermi6742.t1|Name=Gvermi6742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=437bp
MAMSTAESLRLNPINQMSGTINLPGSKSLSNRVLLLSALASGTTEIRNLL
QSDDVRYMKAALDALGIHHEQIDDVVRVSGCAGDIPIATADLFLGNAGTA
MRPLTAALCTANKSGVYELDGTPRMRERPIADLIDALKQLGANVECSETG
CPPVVIRNKDGLPGGEAYVSGKISSQYLSALLMAAPLAKNDTTIIIKDTL
VSVPYVKMTINLMSKYGVTVNVNKEYTQFDIAAQQKYVSPGEVFVEGDAS
SASYFLAGGAITGGPVTVRGCGSDSIQGDVQFASVLEQMGAQVTWDKNSI
SISRDTNTMLKGVDVDCGDIPDAAMSLATTALFAEGQTAIRNVYNWRVKE
TERMKAIVTELRKLGADVEEGRDYCIITPPRTLREGVAIDTYDDHRMAMA
FSLAACGGVAVVINDPACTAKTFPTYFDELAKLTGA*
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spliced messenger RNA

>Gvermi6742.t1 ID=Gvermi6742.t1|Name=Gvermi6742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at ScGOVlb_88:2136078..2137388+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGTCCACTGCGGAGTCTCTTCGATTGAACCCCATCAATCAAAT
GAGCGGAACCATCAATCTGCCTGGATCTAAATCGCTCTCTAATCGCGTCT
TGTTGCTGTCCGCTTTGGCGAGCGGCACGACCGAGATTCGTAACCTGCTA
CAATCCGACGACGTGCGCTACATGAAGGCGGCGCTTGATGCGCTCGGGAT
TCACCACGAACAGATTGACGACGTGGTGCGGGTGTCCGGATGTGCTGGCG
ATATCCCTATTGCCACTGCGGACTTGTTCCTCGGCAATGCCGGAACTGCG
ATGAGACCGCTGACGGCTGCGTTGTGCACGGCAAACAAGTCTGGTGTCTA
CGAGCTGGATGGCACTCCCCGAATGAGGGAGCGCCCCATAGCGGATCTGA
TCGATGCGTTAAAGCAATTAGGAGCAAACGTCGAGTGCTCTGAAACTGGG
TGCCCTCCGGTGGTCATTCGCAACAAAGACGGCTTGCCGGGCGGGGAGGC
GTACGTGAGCGGCAAGATCAGCTCCCAGTATTTGAGCGCATTGCTGATGG
CTGCGCCGCTCGCCAAGAACGACACGACCATCATAATCAAGGACACACTG
GTGTCAGTTCCATACGTGAAGATGACAATCAATCTGATGAGCAAATATGG
CGTGACAGTGAATGTGAACAAAGAGTACACGCAGTTTGACATAGCAGCGC
AACAGAAATATGTTTCGCCGGGCGAGGTGTTTGTCGAAGGTGACGCGTCG
TCAGCAAGTTATTTCCTGGCTGGGGGGGCCATCACTGGCGGGCCAGTGAC
CGTGCGCGGATGCGGCTCGGACTCAATTCAAGGCGACGTGCAATTCGCAA
GCGTGTTGGAACAGATGGGGGCCCAAGTGACTTGGGACAAGAACTCAATC
AGTATAAGTCGCGACACAAACACGATGCTGAAGGGCGTTGATGTTGACTG
CGGAGACATCCCGGACGCGGCGATGAGTCTCGCAACAACTGCACTGTTTG
CAGAGGGACAGACTGCGATCCGCAATGTGTACAACTGGCGCGTGAAGGAG
ACGGAACGGATGAAGGCCATCGTAACCGAGCTGCGCAAGCTGGGCGCCGA
CGTTGAGGAGGGGCGCGACTACTGCATCATCACGCCGCCGCGGACGCTGA
GAGAGGGAGTTGCGATCGATACGTACGACGACCACCGCATGGCGATGGCA
TTCTCGCTGGCGGCCTGCGGTGGCGTGGCCGTGGTGATCAACGACCCCGC
GTGCACGGCGAAGACATTCCCGACGTACTTCGACGAGCTGGCGAAGCTGA
CGGGCGCATGA
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protein sequence of Gvermi6742.t1

>Gvermi6742.t1 ID=Gvermi6742.t1|Name=Gvermi6742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=437bp
MAMSTAESLRLNPINQMSGTINLPGSKSLSNRVLLLSALASGTTEIRNLL
QSDDVRYMKAALDALGIHHEQIDDVVRVSGCAGDIPIATADLFLGNAGTA
MRPLTAALCTANKSGVYELDGTPRMRERPIADLIDALKQLGANVECSETG
CPPVVIRNKDGLPGGEAYVSGKISSQYLSALLMAAPLAKNDTTIIIKDTL
VSVPYVKMTINLMSKYGVTVNVNKEYTQFDIAAQQKYVSPGEVFVEGDAS
SASYFLAGGAITGGPVTVRGCGSDSIQGDVQFASVLEQMGAQVTWDKNSI
SISRDTNTMLKGVDVDCGDIPDAAMSLATTALFAEGQTAIRNVYNWRVKE
TERMKAIVTELRKLGADVEEGRDYCIITPPRTLREGVAIDTYDDHRMAMA
FSLAACGGVAVVINDPACTAKTFPTYFDELAKLTGA*
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mRNA from alignment at ScGOVlb_88:2136078..2137388+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6742.t1 ID=Gvermi6742.t1|Name=Gvermi6742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at ScGOVlb_88:2136078..2137388+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGATGTCCACTGCGGAGTCTCTTCGATTGAACCCCATCAATCAAAT
GAGCGGAACCATCAATCTGCCTGGATCTAAATCGCTCTCTAATCGCGTCT
TGTTGCTGTCCGCTTTGGCGAGCGGCACGACCGAGATTCGTAACCTGCTA
CAATCCGACGACGTGCGCTACATGAAGGCGGCGCTTGATGCGCTCGGGAT
TCACCACGAACAGATTGACGACGTGGTGCGGGTGTCCGGATGTGCTGGCG
ATATCCCTATTGCCACTGCGGACTTGTTCCTCGGCAATGCCGGAACTGCG
ATGAGACCGCTGACGGCTGCGTTGTGCACGGCAAACAAGTCTGGTGTCTA
CGAGCTGGATGGCACTCCCCGAATGAGGGAGCGCCCCATAGCGGATCTGA
TCGATGCGTTAAAGCAATTAGGAGCAAACGTCGAGTGCTCTGAAACTGGG
TGCCCTCCGGTGGTCATTCGCAACAAAGACGGCTTGCCGGGCGGGGAGGC
GTACGTGAGCGGCAAGATCAGCTCCCAGTATTTGAGCGCATTGCTGATGG
CTGCGCCGCTCGCCAAGAACGACACGACCATCATAATCAAGGACACACTG
GTGTCAGTTCCATACGTGAAGATGACAATCAATCTGATGAGCAAATATGG
CGTGACAGTGAATGTGAACAAAGAGTACACGCAGTTTGACATAGCAGCGC
AACAGAAATATGTTTCGCCGGGCGAGGTGTTTGTCGAAGGTGACGCGTCG
TCAGCAAGTTATTTCCTGGCTGGGGGGGCCATCACTGGCGGGCCAGTGAC
CGTGCGCGGATGCGGCTCGGACTCAATTCAAGGCGACGTGCAATTCGCAA
GCGTGTTGGAACAGATGGGGGCCCAAGTGACTTGGGACAAGAACTCAATC
AGTATAAGTCGCGACACAAACACGATGCTGAAGGGCGTTGATGTTGACTG
CGGAGACATCCCGGACGCGGCGATGAGTCTCGCAACAACTGCACTGTTTG
CAGAGGGACAGACTGCGATCCGCAATGTGTACAACTGGCGCGTGAAGGAG
ACGGAACGGATGAAGGCCATCGTAACCGAGCTGCGCAAGCTGGGCGCCGA
CGTTGAGGAGGGGCGCGACTACTGCATCATCACGCCGCCGCGGACGCTGA
GAGAGGGAGTTGCGATCGATACGTACGACGACCACCGCATGGCGATGGCA
TTCTCGCTGGCGGCCTGCGGTGGCGTGGCCGTGGTGATCAACGACCCCGC
GTGCACGGCGAAGACATTCCCGACGTACTTCGACGAGCTGGCGAAGCTGA
CGGGCGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2136078..2137388+

>Gvermi6742.t1 ID=Gvermi6742.t1|Name=Gvermi6742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1311bp|location=Sequence derived from alignment at ScGOVlb_88:2136078..2137388+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGATGTCCACTGCGGAGTCTCTTCGATTGAACCCCATCAATCAAAT
GAGCGGAACCATCAATCTGCCTGGATCTAAATCGCTCTCTAATCGCGTCT
TGTTGCTGTCCGCTTTGGCGAGCGGCACGACCGAGATTCGTAACCTGCTA
CAATCCGACGACGTGCGCTACATGAAGGCGGCGCTTGATGCGCTCGGGAT
TCACCACGAACAGATTGACGACGTGGTGCGGGTGTCCGGATGTGCTGGCG
ATATCCCTATTGCCACTGCGGACTTGTTCCTCGGCAATGCCGGAACTGCG
ATGAGACCGCTGACGGCTGCGTTGTGCACGGCAAACAAGTCTGGTGTCTA
CGAGCTGGATGGCACTCCCCGAATGAGGGAGCGCCCCATAGCGGATCTGA
TCGATGCGTTAAAGCAATTAGGAGCAAACGTCGAGTGCTCTGAAACTGGG
TGCCCTCCGGTGGTCATTCGCAACAAAGACGGCTTGCCGGGCGGGGAGGC
GTACGTGAGCGGCAAGATCAGCTCCCAGTATTTGAGCGCATTGCTGATGG
CTGCGCCGCTCGCCAAGAACGACACGACCATCATAATCAAGGACACACTG
GTGTCAGTTCCATACGTGAAGATGACAATCAATCTGATGAGCAAATATGG
CGTGACAGTGAATGTGAACAAAGAGTACACGCAGTTTGACATAGCAGCGC
AACAGAAATATGTTTCGCCGGGCGAGGTGTTTGTCGAAGGTGACGCGTCG
TCAGCAAGTTATTTCCTGGCTGGGGGGGCCATCACTGGCGGGCCAGTGAC
CGTGCGCGGATGCGGCTCGGACTCAATTCAAGGCGACGTGCAATTCGCAA
GCGTGTTGGAACAGATGGGGGCCCAAGTGACTTGGGACAAGAACTCAATC
AGTATAAGTCGCGACACAAACACGATGCTGAAGGGCGTTGATGTTGACTG
CGGAGACATCCCGGACGCGGCGATGAGTCTCGCAACAACTGCACTGTTTG
CAGAGGGACAGACTGCGATCCGCAATGTGTACAACTGGCGCGTGAAGGAG
ACGGAACGGATGAAGGCCATCGTAACCGAGCTGCGCAAGCTGGGCGCCGA
CGTTGAGGAGGGGCGCGACTACTGCATCATCACGCCGCCGCGGACGCTGA
GAGAGGGAGTTGCGATCGATACGTACGACGACCACCGCATGGCGATGGCA
TTCTCGCTGGCGGCCTGCGGTGGCGTGGCCGTGGTGATCAACGACCCCGC
GTGCACGGCGAAGACATTCCCGACGTACTTCGACGAGCTGGCGAAGCTGA
CGGGCGCATGA
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