Gvermi6795.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6795.t1
Unique Name	Gvermi6795.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2323669..2324748 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1304883.KI912532_gene340
Preferred name	pyrC
PFAMs	Amidohydro_1
Max annot lvl	206389\|Rhodocyclales
KEGG rclass	RC00632
KEGG ko	ko:K01465
KEGG Reaction	R01993
KEGG Pathway	ko00240,ko01100,map00240,map01100
KEGG Module	M00051
Evalue	4.4e-129
EggNOG OGs	COG0418@1\|root,COG0418@2\|Bacteria,1MUYP@1224\|Proteobacteria,2VH6F@28216\|Betaproteobacteria,2KVK1@206389\|Rhodocyclales
EC	3.5.2.3
Description	Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6795	Gvermi6795	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2323669..2324748 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6795.t1.start1	Gvermi6795.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2323669..2323671 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6795.t1.CDS1	Gvermi6795.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2323669..2324748 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6795.t1.exon1	Gvermi6795.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2323669..2324748 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6795.t1.stop1	Gvermi6795.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2324746..2324748 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6795.t1	Gvermi6795.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2323669..2324748 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2323669..2324748+
coding sequence from alignment at ScGOVlb_88:2323669..2324748+

mRNA sequence

>Gvermi6795.t1 ID=Gvermi6795.t1|Name=Gvermi6795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp
MPLISSDASPTGLTIRRPDDFHVHFRDEEMLKVVAPYTARNFARAIVMPN
LQPPVCTAEHASAYRQRIKRALPTNPAFQPLMTLYLTDNTTPEIIRQAHA
TGFVKACKLYPAGATTNSASGVTAVENVFDALETMQQLGMVLCVHGESTE
ANVEIFDREHRFIEATLPMLLQRFPTLKIVLEHVTTSEAVQIVKHTPGNR
LAATITAHHLLYSLQAIFAGAKIRPAMFCLPILKREVHRQALLRAIADDD
QGKFFAGTDSAPHLASAKFCSAGCAGIFSAHAAIELYAEAFEEAGCLEKL
EAFISEHGARFYGLPLNEGSITLIKQSQTIASKVTVPGLGAIVPLRAGEQ
VQWSIHEVK*

spliced messenger RNA

>Gvermi6795.t1 ID=Gvermi6795.t1|Name=Gvermi6795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_88:2323669..2324748+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTTATTAGCAGCGACGCTTCGCCAACAGGCCTGACCATTCGACG
ACCAGATGACTTCCACGTTCACTTTCGTGACGAAGAAATGCTCAAAGTCG
TGGCGCCTTATACAGCCCGTAACTTTGCCAGGGCAATCGTCATGCCCAAT
CTCCAGCCCCCTGTCTGCACTGCCGAACACGCTTCGGCGTACAGGCAGAG
GATCAAACGTGCGTTGCCTACGAATCCCGCCTTTCAACCTCTTATGACTC
TGTATCTCACAGACAACACAACCCCGGAAATAATTCGCCAAGCGCACGCA
ACTGGTTTTGTCAAGGCTTGCAAACTATACCCTGCAGGCGCAACAACCAA
TTCAGCCAGCGGCGTCACCGCCGTCGAGAATGTGTTTGATGCGTTGGAGA
CCATGCAGCAACTCGGCATGGTTTTGTGTGTTCATGGCGAATCCACGGAG
GCCAACGTTGAAATCTTTGATCGAGAACATCGTTTTATTGAGGCGACGCT
GCCCATGTTGTTGCAACGCTTTCCAACGCTCAAGATTGTCCTGGAGCATG
TCACCACATCAGAAGCTGTGCAAATCGTCAAGCACACTCCAGGCAACAGG
CTAGCCGCCACCATCACAGCCCATCATCTGCTGTATTCTCTCCAAGCTAT
ATTTGCAGGCGCCAAGATTCGACCCGCGATGTTTTGTTTGCCTATCTTGA
AACGCGAGGTACATAGGCAGGCACTGTTACGAGCTATAGCCGACGATGAC
CAGGGCAAGTTCTTTGCAGGAACTGATTCTGCCCCTCATCTTGCAAGCGC
CAAGTTCTGTAGCGCCGGCTGTGCAGGCATCTTTTCTGCACACGCTGCGA
TTGAACTCTACGCCGAAGCCTTCGAAGAGGCTGGCTGCTTGGAAAAGCTC
GAAGCTTTCATTAGTGAACACGGAGCGCGCTTTTACGGCCTGCCGTTGAA
TGAAGGATCTATTACATTAATCAAACAATCTCAAACAATTGCTTCAAAGG
TTACAGTTCCTGGCCTTGGTGCCATTGTACCGCTTCGTGCAGGTGAACAA
GTCCAGTGGTCAATCCACGAAGTCAAATGA

protein sequence of Gvermi6795.t1

>Gvermi6795.t1 ID=Gvermi6795.t1|Name=Gvermi6795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=360bp
MPLISSDASPTGLTIRRPDDFHVHFRDEEMLKVVAPYTARNFARAIVMPN
LQPPVCTAEHASAYRQRIKRALPTNPAFQPLMTLYLTDNTTPEIIRQAHA
TGFVKACKLYPAGATTNSASGVTAVENVFDALETMQQLGMVLCVHGESTE
ANVEIFDREHRFIEATLPMLLQRFPTLKIVLEHVTTSEAVQIVKHTPGNR
LAATITAHHLLYSLQAIFAGAKIRPAMFCLPILKREVHRQALLRAIADDD
QGKFFAGTDSAPHLASAKFCSAGCAGIFSAHAAIELYAEAFEEAGCLEKL
EAFISEHGARFYGLPLNEGSITLIKQSQTIASKVTVPGLGAIVPLRAGEQ
VQWSIHEVK*

mRNA from alignment at ScGOVlb_88:2323669..2324748+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6795.t1 ID=Gvermi6795.t1|Name=Gvermi6795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_88:2323669..2324748+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCTTATTAGCAGCGACGCTTCGCCAACAGGCCTGACCATTCGACG
ACCAGATGACTTCCACGTTCACTTTCGTGACGAAGAAATGCTCAAAGTCG
TGGCGCCTTATACAGCCCGTAACTTTGCCAGGGCAATCGTCATGCCCAAT
CTCCAGCCCCCTGTCTGCACTGCCGAACACGCTTCGGCGTACAGGCAGAG
GATCAAACGTGCGTTGCCTACGAATCCCGCCTTTCAACCTCTTATGACTC
TGTATCTCACAGACAACACAACCCCGGAAATAATTCGCCAAGCGCACGCA
ACTGGTTTTGTCAAGGCTTGCAAACTATACCCTGCAGGCGCAACAACCAA
TTCAGCCAGCGGCGTCACCGCCGTCGAGAATGTGTTTGATGCGTTGGAGA
CCATGCAGCAACTCGGCATGGTTTTGTGTGTTCATGGCGAATCCACGGAG
GCCAACGTTGAAATCTTTGATCGAGAACATCGTTTTATTGAGGCGACGCT
GCCCATGTTGTTGCAACGCTTTCCAACGCTCAAGATTGTCCTGGAGCATG
TCACCACATCAGAAGCTGTGCAAATCGTCAAGCACACTCCAGGCAACAGG
CTAGCCGCCACCATCACAGCCCATCATCTGCTGTATTCTCTCCAAGCTAT
ATTTGCAGGCGCCAAGATTCGACCCGCGATGTTTTGTTTGCCTATCTTGA
AACGCGAGGTACATAGGCAGGCACTGTTACGAGCTATAGCCGACGATGAC
CAGGGCAAGTTCTTTGCAGGAACTGATTCTGCCCCTCATCTTGCAAGCGC
CAAGTTCTGTAGCGCCGGCTGTGCAGGCATCTTTTCTGCACACGCTGCGA
TTGAACTCTACGCCGAAGCCTTCGAAGAGGCTGGCTGCTTGGAAAAGCTC
GAAGCTTTCATTAGTGAACACGGAGCGCGCTTTTACGGCCTGCCGTTGAA
TGAAGGATCTATTACATTAATCAAACAATCTCAAACAATTGCTTCAAAGG
TTACAGTTCCTGGCCTTGGTGCCATTGTACCGCTTCGTGCAGGTGAACAA
GTCCAGTGGTCAATCCACGAAGTCAAATGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2323669..2324748+

>Gvermi6795.t1 ID=Gvermi6795.t1|Name=Gvermi6795.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1080bp|location=Sequence derived from alignment at ScGOVlb_88:2323669..2324748+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCCTTATTAGCAGCGACGCTTCGCCAACAGGCCTGACCATTCGACG
ACCAGATGACTTCCACGTTCACTTTCGTGACGAAGAAATGCTCAAAGTCG
TGGCGCCTTATACAGCCCGTAACTTTGCCAGGGCAATCGTCATGCCCAAT
CTCCAGCCCCCTGTCTGCACTGCCGAACACGCTTCGGCGTACAGGCAGAG
GATCAAACGTGCGTTGCCTACGAATCCCGCCTTTCAACCTCTTATGACTC
TGTATCTCACAGACAACACAACCCCGGAAATAATTCGCCAAGCGCACGCA
ACTGGTTTTGTCAAGGCTTGCAAACTATACCCTGCAGGCGCAACAACCAA
TTCAGCCAGCGGCGTCACCGCCGTCGAGAATGTGTTTGATGCGTTGGAGA
CCATGCAGCAACTCGGCATGGTTTTGTGTGTTCATGGCGAATCCACGGAG
GCCAACGTTGAAATCTTTGATCGAGAACATCGTTTTATTGAGGCGACGCT
GCCCATGTTGTTGCAACGCTTTCCAACGCTCAAGATTGTCCTGGAGCATG
TCACCACATCAGAAGCTGTGCAAATCGTCAAGCACACTCCAGGCAACAGG
CTAGCCGCCACCATCACAGCCCATCATCTGCTGTATTCTCTCCAAGCTAT
ATTTGCAGGCGCCAAGATTCGACCCGCGATGTTTTGTTTGCCTATCTTGA
AACGCGAGGTACATAGGCAGGCACTGTTACGAGCTATAGCCGACGATGAC
CAGGGCAAGTTCTTTGCAGGAACTGATTCTGCCCCTCATCTTGCAAGCGC
CAAGTTCTGTAGCGCCGGCTGTGCAGGCATCTTTTCTGCACACGCTGCGA
TTGAACTCTACGCCGAAGCCTTCGAAGAGGCTGGCTGCTTGGAAAAGCTC
GAAGCTTTCATTAGTGAACACGGAGCGCGCTTTTACGGCCTGCCGTTGAA
TGAAGGATCTATTACATTAATCAAACAATCTCAAACAATTGCTTCAAAGG
TTACAGTTCCTGGCCTTGGTGCCATTGTACCGCTTCGTGCAGGTGAACAA
GTCCAGTGGTCAATCCACGAAGTCAAATGA