Gvermi6414.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6414.t1
Unique Name	Gvermi6414.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	747

Homology

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BLAST of Gvermi6414.t1 vs. uniprot
Match: A0A2V3J6S6_9FLOR (Nuclear pore complex protein NUP88 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6S6_9FLOR)

HSP 1 Score: 819 bits (2115), Expect = 1.110e-288
Identity = 438/750 (58.40%), Postives = 553/750 (73.73%), Query Frame = 0

Query:    1 MLALRAHLRTQRAAPAAAPASPHPPHILPSLSPTHAAVVSDNV--MHMIPLTQRAMSREATLLFPPRYELVSGPYTALVSRRRVAVLHHHSGVCYDVATTLFHTRPALDVLHVQWLPSAPAFLMLLTSDYCLRVFDAISAEAAAIERQRIQVVTAGAPPVSFVCASGVGWHALAVYVLAEDGSVYVAAPIAPIGTRIPVDDFRRLRRAANAVLNADASATPSSANTSRRLSFGDSQMPWALRQARLQLVFLDSVFEQSGTEMVAVREFKPAPLLFQGPLHIQKEPNAELFTQLVQITATKQPVLLRVSQQGNVYVLIAMEQVDANWFLSSQPAGEGLLLASKEYASCAQSVAPAFLCFERIAFESAVSLTPVAS--HADTFFFATSTAVYSLTFSFLSLLEDALALERCPTSSLRELFTVHSPHGSSRSSIRAIMSHYVRGDGPVAIVLLADGSFHVTDPLRWHSLQVDLPTLLPDRPFSESQQNRRTHAFREIADNVIHALRHVQSLRDQHGRVGDGTLGKVSSVKSFASILPYLEKRVEGLTGNNQQPGIGDSLGNVASLLLEWTHAVSDRSESNANDINKLQAVLADADRSEQELRLKLNRVKETTEALKRRVKTVFESLETGSAQLSKLELERLTILRQKKRRLAAFRARTAELAAAIQSRNQRLLLEASNLGENSSMSRSNARTGSWRDPTPFGRTHQQQRSQGTVDLGRKEMQQIKVALEKHSDQISEAMEISSSLWKRLSVTT 746
            M ALR HLR  RA   +  A  + P ILP+LSP H  V   +   +H +PL++ + +R      P R+ +VSGPY AL S R VAV H  SG  Y VA  LF  RPAL VLH QWLPSAPAFL+LLTSD CLRVFD +S EAA   RQR+ VVTAG+ PVSFVC +G GWHAL VYVLAEDG++YVAAP+APIGT I + +FR+LR AA  VL   A+ +P   +  RRLSFGDS +PW++RQARLQL FLD+VFEQ+  +M+AVREFKPAPLLFQGPLH++ E   E  TQL+ ++ +  PVLLRVS+ G V VL+AME+ DA WFLSSQP  +GLLLAS++YA CA+SVAPA LCFE+  F++ V+L PVAS  +ADT+F AT +AVYSLT SFLSLL+D LALER P S+LR+LFTV +P  SS   I    SHYVRGDGPVAI+ L+DG+FH TDPLRWH++  D+P LLP     ES  + R +A + +A++V+HALRHV++LR Q+GRV DGTLG VSS++S AS L +LEKRV  LTG + QPGIGDSLGNVA+LLL+WT  +S R++++ + +++LQ  +++ DRSE+EL+ KL R +E  + LK RV+TVFE++E GS QLSK E+ERL  LRQKKRR+AAFR RT ELAAAI+ RN+RL      + +      S +   SWRD +PF R  ++   Q  ++ G KE+QQIKVALEKHS+QIS+AME+SSSLWKRLS+TT
Sbjct:    1 MQALRTHLRALRAVCESEEAVNNTPRILPALSPAHITVPDPDARQLHQLPLSKLSTARSIRATRPFRHAIVSGPYLALYSDRSVAVHHVPSGRSYPVAEALFRDRPALSVLHAQWLPSAPAFLVLLTSDCCLRVFDVVSPEAAETARQRVHVVTAGSAPVSFVCGAGSGWHALCVYVLAEDGALYVAAPLAPIGTTINLAEFRQLRDAAMFVLEQHAADSPQQKDMKRRLSFGDSDLPWSVRQARLQLRFLDTVFEQNAQQMIAVREFKPAPLLFQGPLHVENEVPTEKCTQLLLLSTSSHPVLLRVSEHGRVSVLLAMERFDAQWFLSSQPMEQGLLLASEQYADCARSVAPALLCFEQFVFDAPVALVPVASLSYADTYFLATRSAVYSLTLSFLSLLDDELALERSPRSTLRQLFTVKTPGDSSALRISGFTSHYVRGDGPVAILHLSDGTFHTTDPLRWHTVYHDVPNLLPLNLLVESHSSSRAYACKSLAESVVHALRHVENLRGQNGRVADGTLGTVSSLQSLASTLAFLEKRVIVLTGGDDQPGIGDSLGNVATLLLQWTDELSQRAKNDISKVSELQQAISEGDRSEEELQAKLKRAQEGADQLKSRVRTVFEAIERGSLQLSKAEVERLATLRQKKRRIAAFRTRTVELAAAIRKRNERLANMLREVRQKEDWFSSTSGVQSWRDSSPFARRRERPAEQRALEFGSKELQQIKVALEKHSEQISDAMELSSSLWKRLSITT 750

The following BLAST results are available for this feature:

BLAST of Gvermi6414.t1 vs. uniprot

BLAST of Gvermi6414.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J6S6_9FLOR	1.110e-288	58.40	Nuclear pore complex protein NUP88 n=1 Tax=Gracila...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 577..611
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 676..711
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 676..710
IPR037700	Nucleoporin NUP88/NUP82	PANTHER	PTHR13257	NUCLEOPORIN NUP84-RELATED	coord: 93..731

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:603899..606139 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6414.t1	Gvermi6414.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_88 603899..606139 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6414.t1 ID=Gvermi6414.t1|Name=Gvermi6414.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=747bp
MLALRAHLRTQRAAPAAAPASPHPPHILPSLSPTHAAVVSDNVMHMIPLT
QRAMSREATLLFPPRYELVSGPYTALVSRRRVAVLHHHSGVCYDVATTLF
HTRPALDVLHVQWLPSAPAFLMLLTSDYCLRVFDAISAEAAAIERQRIQV
VTAGAPPVSFVCASGVGWHALAVYVLAEDGSVYVAAPIAPIGTRIPVDDF
RRLRRAANAVLNADASATPSSANTSRRLSFGDSQMPWALRQARLQLVFLD
SVFEQSGTEMVAVREFKPAPLLFQGPLHIQKEPNAELFTQLVQITATKQP
VLLRVSQQGNVYVLIAMEQVDANWFLSSQPAGEGLLLASKEYASCAQSVA
PAFLCFERIAFESAVSLTPVASHADTFFFATSTAVYSLTFSFLSLLEDAL
ALERCPTSSLRELFTVHSPHGSSRSSIRAIMSHYVRGDGPVAIVLLADGS
FHVTDPLRWHSLQVDLPTLLPDRPFSESQQNRRTHAFREIADNVIHALRH
VQSLRDQHGRVGDGTLGKVSSVKSFASILPYLEKRVEGLTGNNQQPGIGD
SLGNVASLLLEWTHAVSDRSESNANDINKLQAVLADADRSEQELRLKLNR
VKETTEALKRRVKTVFESLETGSAQLSKLELERLTILRQKKRRLAAFRAR
TAELAAAIQSRNQRLLLEASNLGENSSMSRSNARTGSWRDPTPFGRTHQQ
QRSQGTVDLGRKEMQQIKVALEKHSDQISEAMEISSSLWKRLSVTT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR037700	NUP88/NUP82