Gvermi6748.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6748.t1
Unique Name	Gvermi6748.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2145582..2146784 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122222.AXWR01000002_gene2129
PFAMs	EamA
Max annot lvl	1297\|Deinococcus-Thermus
Evalue	5.22e-25
EggNOG OGs	COG0697@1\|root,COG0697@2\|Bacteria,1WIES@1297\|Deinococcus-Thermus
Description	PFAM EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6748	Gvermi6748	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2145582..2146784 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6748.t1.start1	Gvermi6748.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2145582..2145584 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6748.t1.CDS1	Gvermi6748.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2145582..2146784 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6748.t1.exon1	Gvermi6748.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2145582..2146784 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6748.t1.stop1	Gvermi6748.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2146782..2146784 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6748.t1	Gvermi6748.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2145582..2146784 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2145582..2146784+
coding sequence from alignment at ScGOVlb_88:2145582..2146784+

mRNA sequence

>Gvermi6748.t1 ID=Gvermi6748.t1|Name=Gvermi6748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=401bp
MSTIPFAFVRGTLLHHSLHRSAPASLRRHRPLIVRCPSTTSRSTIPKLSA
ATPGRPAIVRPFPQQPSSISLSFGPLKSQVSARLLLCLVPLIMATFLACA
KLLYILPAALSPAHFNAARLVVASLFFLPALAREIPKIRSSPRPTMRLIR
AGVELGILMFFANIMQLLGLRYTDASRAAFLQQMSTVLVPLTAAALRIET
LTPRVTAGAACALGGVALLTLTAAPAAAGVAASLRPIGDCMEMFSAVILT
VFMLRCSHHARKIKNSGALVATKVCTQTILSLVWLGGQALVNKASSMNAA
SVAATASAASLTWTPMAVLLNVMLVLWAGVIVSAGVSWLQTKGQQAVPAS
EAAVLFAAQPLWASVVASLMLGERLTSLGMAGAGMIVSGAVISSTGKKSS
*

spliced messenger RNA

>Gvermi6748.t1 ID=Gvermi6748.t1|Name=Gvermi6748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at ScGOVlb_88:2145582..2146784+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACTATTCCGTTTGCCTTCGTCCGTGGCACTCTGTTACATCATTC
TCTTCATCGATCTGCACCGGCATCGCTTCGTCGGCATCGGCCGCTCATCG
TACGATGCCCATCCACCACCAGCCGAAGTACTATACCAAAACTATCCGCT
GCCACACCAGGCCGGCCCGCCATAGTGCGGCCATTTCCTCAACAGCCCTC
CTCTATATCACTTTCATTTGGACCCTTGAAGTCGCAAGTATCAGCCCGAC
TGCTCCTCTGCCTCGTTCCTCTCATCATGGCAACCTTTCTCGCGTGCGCT
AAGCTGTTGTACATTCTTCCTGCCGCCCTTTCGCCCGCTCATTTCAATGC
AGCACGTCTCGTCGTCGCCTCCTTATTCTTCCTCCCGGCTCTTGCGCGAG
AGATTCCAAAGATTCGATCATCGCCGCGTCCGACCATGCGCCTTATACGG
GCAGGTGTTGAACTAGGAATTTTGATGTTCTTTGCCAATATCATGCAGTT
GCTTGGACTGAGGTACACAGACGCCTCCCGCGCTGCTTTTCTGCAACAGA
TGTCGACTGTGCTTGTGCCGCTTACAGCTGCAGCGCTGCGCATCGAGACT
CTTACTCCGCGTGTGACTGCCGGGGCTGCTTGCGCCCTTGGCGGTGTCGC
GCTACTCACTCTCACTGCTGCTCCTGCGGCCGCGGGTGTCGCCGCGAGTC
TTCGACCAATTGGTGATTGCATGGAAATGTTTTCCGCCGTCATTCTCACG
GTGTTCATGCTGCGGTGCTCCCATCACGCAAGAAAAATCAAGAACAGTGG
TGCACTAGTCGCCACCAAGGTTTGCACTCAGACCATTCTTTCTCTTGTGT
GGCTCGGAGGTCAGGCTCTAGTGAACAAGGCCAGTTCCATGAATGCAGCT
TCAGTCGCCGCTACTGCATCTGCTGCGTCCCTGACATGGACACCAATGGC
TGTTCTGTTGAATGTCATGCTCGTTCTTTGGGCTGGCGTGATTGTCAGCG
CTGGTGTTTCATGGTTACAAACGAAGGGCCAGCAAGCCGTCCCGGCATCT
GAGGCCGCGGTTTTATTTGCGGCGCAGCCCTTGTGGGCTAGTGTTGTGGC
CTCGCTCATGTTGGGTGAACGGTTGACATCTCTTGGCATGGCAGGCGCCG
GAATGATTGTATCTGGCGCTGTTATCTCAAGCACTGGGAAGAAGAGCAGC
TAA

protein sequence of Gvermi6748.t1

>Gvermi6748.t1 ID=Gvermi6748.t1|Name=Gvermi6748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=401bp
MSTIPFAFVRGTLLHHSLHRSAPASLRRHRPLIVRCPSTTSRSTIPKLSA
ATPGRPAIVRPFPQQPSSISLSFGPLKSQVSARLLLCLVPLIMATFLACA
KLLYILPAALSPAHFNAARLVVASLFFLPALAREIPKIRSSPRPTMRLIR
AGVELGILMFFANIMQLLGLRYTDASRAAFLQQMSTVLVPLTAAALRIET
LTPRVTAGAACALGGVALLTLTAAPAAAGVAASLRPIGDCMEMFSAVILT
VFMLRCSHHARKIKNSGALVATKVCTQTILSLVWLGGQALVNKASSMNAA
SVAATASAASLTWTPMAVLLNVMLVLWAGVIVSAGVSWLQTKGQQAVPAS
EAAVLFAAQPLWASVVASLMLGERLTSLGMAGAGMIVSGAVISSTGKKSS
*

mRNA from alignment at ScGOVlb_88:2145582..2146784+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6748.t1 ID=Gvermi6748.t1|Name=Gvermi6748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at ScGOVlb_88:2145582..2146784+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACTATTCCGTTTGCCTTCGTCCGTGGCACTCTGTTACATCATTC
TCTTCATCGATCTGCACCGGCATCGCTTCGTCGGCATCGGCCGCTCATCG
TACGATGCCCATCCACCACCAGCCGAAGTACTATACCAAAACTATCCGCT
GCCACACCAGGCCGGCCCGCCATAGTGCGGCCATTTCCTCAACAGCCCTC
CTCTATATCACTTTCATTTGGACCCTTGAAGTCGCAAGTATCAGCCCGAC
TGCTCCTCTGCCTCGTTCCTCTCATCATGGCAACCTTTCTCGCGTGCGCT
AAGCTGTTGTACATTCTTCCTGCCGCCCTTTCGCCCGCTCATTTCAATGC
AGCACGTCTCGTCGTCGCCTCCTTATTCTTCCTCCCGGCTCTTGCGCGAG
AGATTCCAAAGATTCGATCATCGCCGCGTCCGACCATGCGCCTTATACGG
GCAGGTGTTGAACTAGGAATTTTGATGTTCTTTGCCAATATCATGCAGTT
GCTTGGACTGAGGTACACAGACGCCTCCCGCGCTGCTTTTCTGCAACAGA
TGTCGACTGTGCTTGTGCCGCTTACAGCTGCAGCGCTGCGCATCGAGACT
CTTACTCCGCGTGTGACTGCCGGGGCTGCTTGCGCCCTTGGCGGTGTCGC
GCTACTCACTCTCACTGCTGCTCCTGCGGCCGCGGGTGTCGCCGCGAGTC
TTCGACCAATTGGTGATTGCATGGAAATGTTTTCCGCCGTCATTCTCACG
GTGTTCATGCTGCGGTGCTCCCATCACGCAAGAAAAATCAAGAACAGTGG
TGCACTAGTCGCCACCAAGGTTTGCACTCAGACCATTCTTTCTCTTGTGT
GGCTCGGAGGTCAGGCTCTAGTGAACAAGGCCAGTTCCATGAATGCAGCT
TCAGTCGCCGCTACTGCATCTGCTGCGTCCCTGACATGGACACCAATGGC
TGTTCTGTTGAATGTCATGCTCGTTCTTTGGGCTGGCGTGATTGTCAGCG
CTGGTGTTTCATGGTTACAAACGAAGGGCCAGCAAGCCGTCCCGGCATCT
GAGGCCGCGGTTTTATTTGCGGCGCAGCCCTTGTGGGCTAGTGTTGTGGC
CTCGCTCATGTTGGGTGAACGGTTGACATCTCTTGGCATGGCAGGCGCCG
GAATGATTGTATCTGGCGCTGTTATCTCAAGCACTGGGAAGAAGAGCAGC
TAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2145582..2146784+

>Gvermi6748.t1 ID=Gvermi6748.t1|Name=Gvermi6748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1203bp|location=Sequence derived from alignment at ScGOVlb_88:2145582..2146784+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACTATTCCGTTTGCCTTCGTCCGTGGCACTCTGTTACATCATTC
TCTTCATCGATCTGCACCGGCATCGCTTCGTCGGCATCGGCCGCTCATCG
TACGATGCCCATCCACCACCAGCCGAAGTACTATACCAAAACTATCCGCT
GCCACACCAGGCCGGCCCGCCATAGTGCGGCCATTTCCTCAACAGCCCTC
CTCTATATCACTTTCATTTGGACCCTTGAAGTCGCAAGTATCAGCCCGAC
TGCTCCTCTGCCTCGTTCCTCTCATCATGGCAACCTTTCTCGCGTGCGCT
AAGCTGTTGTACATTCTTCCTGCCGCCCTTTCGCCCGCTCATTTCAATGC
AGCACGTCTCGTCGTCGCCTCCTTATTCTTCCTCCCGGCTCTTGCGCGAG
AGATTCCAAAGATTCGATCATCGCCGCGTCCGACCATGCGCCTTATACGG
GCAGGTGTTGAACTAGGAATTTTGATGTTCTTTGCCAATATCATGCAGTT
GCTTGGACTGAGGTACACAGACGCCTCCCGCGCTGCTTTTCTGCAACAGA
TGTCGACTGTGCTTGTGCCGCTTACAGCTGCAGCGCTGCGCATCGAGACT
CTTACTCCGCGTGTGACTGCCGGGGCTGCTTGCGCCCTTGGCGGTGTCGC
GCTACTCACTCTCACTGCTGCTCCTGCGGCCGCGGGTGTCGCCGCGAGTC
TTCGACCAATTGGTGATTGCATGGAAATGTTTTCCGCCGTCATTCTCACG
GTGTTCATGCTGCGGTGCTCCCATCACGCAAGAAAAATCAAGAACAGTGG
TGCACTAGTCGCCACCAAGGTTTGCACTCAGACCATTCTTTCTCTTGTGT
GGCTCGGAGGTCAGGCTCTAGTGAACAAGGCCAGTTCCATGAATGCAGCT
TCAGTCGCCGCTACTGCATCTGCTGCGTCCCTGACATGGACACCAATGGC
TGTTCTGTTGAATGTCATGCTCGTTCTTTGGGCTGGCGTGATTGTCAGCG
CTGGTGTTTCATGGTTACAAACGAAGGGCCAGCAAGCCGTCCCGGCATCT
GAGGCCGCGGTTTTATTTGCGGCGCAGCCCTTGTGGGCTAGTGTTGTGGC
CTCGCTCATGTTGGGTGAACGGTTGACATCTCTTGGCATGGCAGGCGCCG
GAATGATTGTATCTGGCGCTGTTATCTCAAGCACTGGGAAGAAGAGCAGC
TAA