Gvermi6544.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6544.t1
Unique Name	Gvermi6544.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	676

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:1290365..1292392 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705513.1
Preferred name	HMA1
PFAMs	E1-E2_ATPase,HMA,Hydrolase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01534
KEGG TC	3.A.3.6
Evalue	4.8e-122
EggNOG OGs	COG2217@1\|root,KOG0207@2759\|Eukaryota
EC	3.6.3.3,3.6.3.5
Description	cation-transporting ATPase activity
COG category	P
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6544	Gvermi6544	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 1290365..1292392 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6544.t1.start1	Gvermi6544.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 1290365..1290367 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6544.t1.CDS1	Gvermi6544.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 1290365..1292392 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6544.t1.exon1	Gvermi6544.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 1290365..1292392 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6544.t1.stop1	Gvermi6544.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 1292390..1292392 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6544.t1	Gvermi6544.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 1290365..1292392 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:1290365..1292392+
coding sequence from alignment at ScGOVlb_88:1290365..1292392+

mRNA sequence

>Gvermi6544.t1 ID=Gvermi6544.t1|Name=Gvermi6544.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=676bp
MPAASLSALLLATAAALHAATLASFLVRASLLGCFVLTGLPALADSSLRI
IRSRGRTTDVNVLMSIAAAVCFFTGALFEGALLTTLYAVSHAAEDWMSGR
ARRELESLRNQTPSYALRVDSPTSSEPVSVPVDKVMIGDFLLVKTGQILP
CDGQIVSGDAFVSMQHLTGEPVPRHVEVGDDVPAGSRTEDASIVVRVTKI
GAESYLARIARLVTAAQENRPHVTKFFDRFGQIYARSVLTISFLIALVLP
IASSLFASLVPTIRYAGRSGSVARALGFLVVASPCALLIGAPIAYVAALS
ACARKGILAKSGAKSLEAASRATHVVFDKTGTLTTGKLTLNSTAKLPNEK
QHASKTNGIPPSGRHGVSAGVNTLDTLIEVDGHNLSRVISTAAALERGAV
HPIASALHSRAKQLGGPFPDVVETRTIAGQGVEGVLSFGADDREVSEFVG
RLGRPAYILPAHSTAHRRLIEDATSRGEIVSILEIAEERYLLRMKDEVRP
DAEQLVQGLRRLGYGVTILTGDSTGAAKVVSDSVGGGVKVVANATPEDKV
DYVRSLESVLQRKNEGSLMVGDGVNDAAALASALVGVACGLSSATAVHAA
DVVLVREELTNVEWFVKKAKATEGIVRQNLAIALSLMVLSAVACVFGSIP
LWLAVTLHEGGTLLVGVNGLRLLRG*

spliced messenger RNA

>Gvermi6544.t1 ID=Gvermi6544.t1|Name=Gvermi6544.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_88:1290365..1292392+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCAGCGTCTTTGAGTGCACTCCTACTCGCAACGGCCGCTGCTCT
TCATGCAGCAACCTTGGCATCTTTTCTCGTGCGCGCCTCTCTTTTGGGCT
GTTTTGTGCTAACTGGTCTTCCGGCTTTGGCTGACAGTTCGCTTCGAATC
ATACGTTCTCGCGGCAGAACGACAGACGTAAACGTTCTCATGAGCATCGC
TGCCGCTGTTTGTTTCTTCACTGGTGCGCTCTTCGAAGGAGCATTGCTTA
CCACATTATACGCCGTGTCACACGCAGCGGAGGACTGGATGTCTGGTCGG
GCACGGCGAGAGCTCGAATCATTACGCAATCAAACTCCAAGCTATGCTCT
CCGCGTTGACTCTCCAACCTCCTCTGAGCCAGTTTCTGTACCAGTGGACA
AAGTGATGATAGGTGACTTTCTTCTCGTCAAAACAGGCCAAATTTTACCA
TGTGATGGTCAAATAGTTAGCGGAGATGCCTTTGTTTCGATGCAGCATTT
AACGGGAGAACCTGTTCCTCGTCATGTAGAAGTTGGCGATGATGTTCCAG
CCGGCAGCAGAACCGAAGACGCGTCCATTGTTGTTCGAGTAACCAAGATT
GGAGCAGAGAGCTACCTTGCCCGTATTGCTCGACTCGTCACTGCCGCTCA
AGAGAATCGCCCACACGTAACAAAATTCTTTGATCGTTTCGGACAAATTT
ATGCGCGCTCTGTGCTAACGATTTCATTCCTCATAGCACTTGTACTACCC
ATCGCATCATCACTATTTGCATCTCTTGTACCAACCATTCGATATGCGGG
GCGCTCTGGGTCAGTTGCGCGTGCTCTCGGATTCCTGGTGGTCGCGTCAC
CTTGCGCTCTGCTTATTGGCGCTCCCATTGCCTATGTAGCTGCGCTTAGT
GCATGCGCTCGAAAAGGCATTCTCGCAAAGTCGGGTGCCAAGTCCCTTGA
GGCTGCTTCTCGTGCGACGCACGTTGTTTTCGACAAGACGGGAACACTTA
CGACTGGAAAGCTCACTTTGAATTCTACCGCAAAACTACCAAACGAAAAA
CAGCATGCGAGCAAAACGAACGGAATACCACCCAGTGGAAGACATGGAGT
GTCTGCAGGAGTAAACACACTTGACACACTTATAGAAGTTGATGGGCATA
ATTTGTCTCGAGTGATATCTACGGCGGCGGCTTTGGAACGCGGAGCTGTA
CATCCAATTGCTTCTGCACTTCACAGCCGGGCAAAACAACTCGGTGGGCC
TTTCCCAGATGTCGTGGAGACTCGAACAATAGCTGGACAAGGGGTTGAAG
GTGTTCTAAGTTTTGGTGCGGATGACCGTGAGGTGTCGGAGTTTGTTGGC
CGCTTGGGACGACCAGCATATATTCTTCCGGCTCATTCCACTGCTCATCG
AAGATTAATTGAGGATGCCACCTCGAGAGGAGAAATTGTTTCTATTCTGG
AAATCGCAGAGGAGAGGTACCTCTTGCGCATGAAAGACGAAGTACGACCG
GACGCCGAACAGCTCGTTCAAGGCCTAAGACGGCTAGGATACGGTGTAAC
CATTTTGACTGGTGACAGTACGGGAGCTGCAAAAGTGGTTTCTGATTCTG
TTGGTGGAGGTGTCAAGGTAGTCGCGAACGCAACCCCCGAGGACAAGGTA
GATTATGTTCGATCCTTGGAGTCTGTGTTGCAAAGAAAGAACGAGGGGTC
ACTCATGGTAGGCGATGGGGTGAACGATGCTGCTGCTCTAGCATCAGCAT
TGGTCGGAGTTGCATGTGGCCTGAGCAGTGCAACCGCCGTCCACGCGGCA
GATGTCGTGCTTGTTCGGGAGGAACTAACCAACGTCGAATGGTTCGTAAA
AAAAGCGAAGGCAACTGAAGGAATCGTCAGACAAAACTTGGCCATTGCAT
TGAGTTTGATGGTTCTTTCCGCGGTAGCATGTGTGTTCGGATCAATTCCT
TTATGGCTGGCGGTTACTTTACATGAAGGCGGGACCTTGCTAGTCGGTGT
CAATGGCCTGAGGCTCTTGCGAGGATAG

protein sequence of Gvermi6544.t1

>Gvermi6544.t1 ID=Gvermi6544.t1|Name=Gvermi6544.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=676bp
MPAASLSALLLATAAALHAATLASFLVRASLLGCFVLTGLPALADSSLRI
IRSRGRTTDVNVLMSIAAAVCFFTGALFEGALLTTLYAVSHAAEDWMSGR
ARRELESLRNQTPSYALRVDSPTSSEPVSVPVDKVMIGDFLLVKTGQILP
CDGQIVSGDAFVSMQHLTGEPVPRHVEVGDDVPAGSRTEDASIVVRVTKI
GAESYLARIARLVTAAQENRPHVTKFFDRFGQIYARSVLTISFLIALVLP
IASSLFASLVPTIRYAGRSGSVARALGFLVVASPCALLIGAPIAYVAALS
ACARKGILAKSGAKSLEAASRATHVVFDKTGTLTTGKLTLNSTAKLPNEK
QHASKTNGIPPSGRHGVSAGVNTLDTLIEVDGHNLSRVISTAAALERGAV
HPIASALHSRAKQLGGPFPDVVETRTIAGQGVEGVLSFGADDREVSEFVG
RLGRPAYILPAHSTAHRRLIEDATSRGEIVSILEIAEERYLLRMKDEVRP
DAEQLVQGLRRLGYGVTILTGDSTGAAKVVSDSVGGGVKVVANATPEDKV
DYVRSLESVLQRKNEGSLMVGDGVNDAAALASALVGVACGLSSATAVHAA
DVVLVREELTNVEWFVKKAKATEGIVRQNLAIALSLMVLSAVACVFGSIP
LWLAVTLHEGGTLLVGVNGLRLLRG*

mRNA from alignment at ScGOVlb_88:1290365..1292392+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6544.t1 ID=Gvermi6544.t1|Name=Gvermi6544.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at ScGOVlb_88:1290365..1292392+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCAGCGTCTTTGAGTGCACTCCTACTCGCAACGGCCGCTGCTCT
TCATGCAGCAACCTTGGCATCTTTTCTCGTGCGCGCCTCTCTTTTGGGCT
GTTTTGTGCTAACTGGTCTTCCGGCTTTGGCTGACAGTTCGCTTCGAATC
ATACGTTCTCGCGGCAGAACGACAGACGTAAACGTTCTCATGAGCATCGC
TGCCGCTGTTTGTTTCTTCACTGGTGCGCTCTTCGAAGGAGCATTGCTTA
CCACATTATACGCCGTGTCACACGCAGCGGAGGACTGGATGTCTGGTCGG
GCACGGCGAGAGCTCGAATCATTACGCAATCAAACTCCAAGCTATGCTCT
CCGCGTTGACTCTCCAACCTCCTCTGAGCCAGTTTCTGTACCAGTGGACA
AAGTGATGATAGGTGACTTTCTTCTCGTCAAAACAGGCCAAATTTTACCA
TGTGATGGTCAAATAGTTAGCGGAGATGCCTTTGTTTCGATGCAGCATTT
AACGGGAGAACCTGTTCCTCGTCATGTAGAAGTTGGCGATGATGTTCCAG
CCGGCAGCAGAACCGAAGACGCGTCCATTGTTGTTCGAGTAACCAAGATT
GGAGCAGAGAGCTACCTTGCCCGTATTGCTCGACTCGTCACTGCCGCTCA
AGAGAATCGCCCACACGTAACAAAATTCTTTGATCGTTTCGGACAAATTT
ATGCGCGCTCTGTGCTAACGATTTCATTCCTCATAGCACTTGTACTACCC
ATCGCATCATCACTATTTGCATCTCTTGTACCAACCATTCGATATGCGGG
GCGCTCTGGGTCAGTTGCGCGTGCTCTCGGATTCCTGGTGGTCGCGTCAC
CTTGCGCTCTGCTTATTGGCGCTCCCATTGCCTATGTAGCTGCGCTTAGT
GCATGCGCTCGAAAAGGCATTCTCGCAAAGTCGGGTGCCAAGTCCCTTGA
GGCTGCTTCTCGTGCGACGCACGTTGTTTTCGACAAGACGGGAACACTTA
CGACTGGAAAGCTCACTTTGAATTCTACCGCAAAACTACCAAACGAAAAA
CAGCATGCGAGCAAAACGAACGGAATACCACCCAGTGGAAGACATGGAGT
GTCTGCAGGAGTAAACACACTTGACACACTTATAGAAGTTGATGGGCATA
ATTTGTCTCGAGTGATATCTACGGCGGCGGCTTTGGAACGCGGAGCTGTA
CATCCAATTGCTTCTGCACTTCACAGCCGGGCAAAACAACTCGGTGGGCC
TTTCCCAGATGTCGTGGAGACTCGAACAATAGCTGGACAAGGGGTTGAAG
GTGTTCTAAGTTTTGGTGCGGATGACCGTGAGGTGTCGGAGTTTGTTGGC
CGCTTGGGACGACCAGCATATATTCTTCCGGCTCATTCCACTGCTCATCG
AAGATTAATTGAGGATGCCACCTCGAGAGGAGAAATTGTTTCTATTCTGG
AAATCGCAGAGGAGAGGTACCTCTTGCGCATGAAAGACGAAGTACGACCG
GACGCCGAACAGCTCGTTCAAGGCCTAAGACGGCTAGGATACGGTGTAAC
CATTTTGACTGGTGACAGTACGGGAGCTGCAAAAGTGGTTTCTGATTCTG
TTGGTGGAGGTGTCAAGGTAGTCGCGAACGCAACCCCCGAGGACAAGGTA
GATTATGTTCGATCCTTGGAGTCTGTGTTGCAAAGAAAGAACGAGGGGTC
ACTCATGGTAGGCGATGGGGTGAACGATGCTGCTGCTCTAGCATCAGCAT
TGGTCGGAGTTGCATGTGGCCTGAGCAGTGCAACCGCCGTCCACGCGGCA
GATGTCGTGCTTGTTCGGGAGGAACTAACCAACGTCGAATGGTTCGTAAA
AAAAGCGAAGGCAACTGAAGGAATCGTCAGACAAAACTTGGCCATTGCAT
TGAGTTTGATGGTTCTTTCCGCGGTAGCATGTGTGTTCGGATCAATTCCT
TTATGGCTGGCGGTTACTTTACATGAAGGCGGGACCTTGCTAGTCGGTGT
CAATGGCCTGAGGCTCTTGCGAGGATAG

Coding sequence (CDS) from alignment at ScGOVlb_88:1290365..1292392+

>Gvermi6544.t1 ID=Gvermi6544.t1|Name=Gvermi6544.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2028bp|location=Sequence derived from alignment at ScGOVlb_88:1290365..1292392+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCAGCGTCTTTGAGTGCACTCCTACTCGCAACGGCCGCTGCTCT
TCATGCAGCAACCTTGGCATCTTTTCTCGTGCGCGCCTCTCTTTTGGGCT
GTTTTGTGCTAACTGGTCTTCCGGCTTTGGCTGACAGTTCGCTTCGAATC
ATACGTTCTCGCGGCAGAACGACAGACGTAAACGTTCTCATGAGCATCGC
TGCCGCTGTTTGTTTCTTCACTGGTGCGCTCTTCGAAGGAGCATTGCTTA
CCACATTATACGCCGTGTCACACGCAGCGGAGGACTGGATGTCTGGTCGG
GCACGGCGAGAGCTCGAATCATTACGCAATCAAACTCCAAGCTATGCTCT
CCGCGTTGACTCTCCAACCTCCTCTGAGCCAGTTTCTGTACCAGTGGACA
AAGTGATGATAGGTGACTTTCTTCTCGTCAAAACAGGCCAAATTTTACCA
TGTGATGGTCAAATAGTTAGCGGAGATGCCTTTGTTTCGATGCAGCATTT
AACGGGAGAACCTGTTCCTCGTCATGTAGAAGTTGGCGATGATGTTCCAG
CCGGCAGCAGAACCGAAGACGCGTCCATTGTTGTTCGAGTAACCAAGATT
GGAGCAGAGAGCTACCTTGCCCGTATTGCTCGACTCGTCACTGCCGCTCA
AGAGAATCGCCCACACGTAACAAAATTCTTTGATCGTTTCGGACAAATTT
ATGCGCGCTCTGTGCTAACGATTTCATTCCTCATAGCACTTGTACTACCC
ATCGCATCATCACTATTTGCATCTCTTGTACCAACCATTCGATATGCGGG
GCGCTCTGGGTCAGTTGCGCGTGCTCTCGGATTCCTGGTGGTCGCGTCAC
CTTGCGCTCTGCTTATTGGCGCTCCCATTGCCTATGTAGCTGCGCTTAGT
GCATGCGCTCGAAAAGGCATTCTCGCAAAGTCGGGTGCCAAGTCCCTTGA
GGCTGCTTCTCGTGCGACGCACGTTGTTTTCGACAAGACGGGAACACTTA
CGACTGGAAAGCTCACTTTGAATTCTACCGCAAAACTACCAAACGAAAAA
CAGCATGCGAGCAAAACGAACGGAATACCACCCAGTGGAAGACATGGAGT
GTCTGCAGGAGTAAACACACTTGACACACTTATAGAAGTTGATGGGCATA
ATTTGTCTCGAGTGATATCTACGGCGGCGGCTTTGGAACGCGGAGCTGTA
CATCCAATTGCTTCTGCACTTCACAGCCGGGCAAAACAACTCGGTGGGCC
TTTCCCAGATGTCGTGGAGACTCGAACAATAGCTGGACAAGGGGTTGAAG
GTGTTCTAAGTTTTGGTGCGGATGACCGTGAGGTGTCGGAGTTTGTTGGC
CGCTTGGGACGACCAGCATATATTCTTCCGGCTCATTCCACTGCTCATCG
AAGATTAATTGAGGATGCCACCTCGAGAGGAGAAATTGTTTCTATTCTGG
AAATCGCAGAGGAGAGGTACCTCTTGCGCATGAAAGACGAAGTACGACCG
GACGCCGAACAGCTCGTTCAAGGCCTAAGACGGCTAGGATACGGTGTAAC
CATTTTGACTGGTGACAGTACGGGAGCTGCAAAAGTGGTTTCTGATTCTG
TTGGTGGAGGTGTCAAGGTAGTCGCGAACGCAACCCCCGAGGACAAGGTA
GATTATGTTCGATCCTTGGAGTCTGTGTTGCAAAGAAAGAACGAGGGGTC
ACTCATGGTAGGCGATGGGGTGAACGATGCTGCTGCTCTAGCATCAGCAT
TGGTCGGAGTTGCATGTGGCCTGAGCAGTGCAACCGCCGTCCACGCGGCA
GATGTCGTGCTTGTTCGGGAGGAACTAACCAACGTCGAATGGTTCGTAAA
AAAAGCGAAGGCAACTGAAGGAATCGTCAGACAAAACTTGGCCATTGCAT
TGAGTTTGATGGTTCTTTCCGCGGTAGCATGTGTGTTCGGATCAATTCCT
TTATGGCTGGCGGTTACTTTACATGAAGGCGGGACCTTGCTAGTCGGTGT
CAATGGCCTGAGGCTCTTGCGAGGATAG