Gvermi6788.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6788.t1
Unique NameGvermi6788.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length106
Homology
BLAST of Gvermi6788.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 145 bits (366), Expect = 9.670e-39
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            +L  ++ +WDG+LG+I  T+HRI L+P ++P+   PYRA P ARE E+ +VE++L+A VIEPA S WASPVVL PKPDGS RFCVDYRKLN+ TVKD YP+PRMD
Sbjct:  331 LLERYSHMWDGSLGEIKATKHRIQLIPGSKPVHSHPYRAGPKAREMERQEVERMLKADVIEPACSEWASPVVLVPKPDGSLRFCVDYRKLNSITVKDTYPLPRMD 435          
BLAST of Gvermi6788.t1 vs. uniprot
Match: R7QHJ7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ7_CHOCR)

HSP 1 Score: 129 bits (325), Expect = 1.540e-35
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 0
Query:    8 LWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            +W G LGKIG T+HRI+L P  R I K PY A PTARE+EK +++++LRAGVIEPA + WASPVV   K +G+ RFCVDYR LNA TV+D YP+ RMD
Sbjct:    1 MWTGQLGKIGATKHRIELEPGARQIYKAPYPAGPTAREKEKTEIDRMLRAGVIEPATAEWASPVVFVRKKEGTMRFCVDYRTLNAVTVRDSYPLLRMD 98          
BLAST of Gvermi6788.t1 vs. uniprot
Match: R7QIA9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA9_CHOCR)

HSP 1 Score: 135 bits (340), Expect = 1.660e-35
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            ML +++ +W G LG+I +T+H ID +  TRPI++ PYRA P ARE E  +V+ +LRAGV+EP++S WASPV L PK DG  RFCVDYR+LNA T++D YP+PRMD
Sbjct:  121 MLLKYSSMWSGELGEIKVTKHHIDTMTGTRPIAQNPYRAGPHAREAEMKEVDCMLRAGVLEPSKSAWASPVALLPKKDGQLRFCVDYRRLNAVTIRDSYPLPRMD 225          
BLAST of Gvermi6788.t1 vs. uniprot
Match: UPI001E1DB02D (uncharacterized protein LOC123543982 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB02D)

HSP 1 Score: 133 bits (335), Expect = 1.600e-34
Identity = 61/105 (58.10%), Postives = 78/105 (74.29%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            ML +   +W G LG++  T HRIDL+P  +P+   PYRA P AR  E A+++++L+A VIEPA S WASP+VL  KPDGS RFCVDYR+LNA TV+D YP+PRMD
Sbjct:  341 MLAKHRSMWSGKLGQVQSTNHRIDLIPGQKPVHCQPYRAGPRARAVESAEIQRMLKAQVIEPATSEWASPIVLVAKPDGSTRFCVDYRRLNAITVRDSYPLPRMD 445          
BLAST of Gvermi6788.t1 vs. uniprot
Match: R7QMC5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMC5_CHOCR)

HSP 1 Score: 134 bits (336), Expect = 3.040e-34
Identity = 63/105 (60.00%), Postives = 76/105 (72.38%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            ML EF  +W G LGKI  T+H I+L P  +PI + PYRA P ARE+EK +++ +LRAGVIEP  + WASPV   PK DG+  FCVDYRKLNA TV+D YP PRMD
Sbjct:  144 MLSEFKDMWSGHLGKIDATKHHIELKPGGKPIYQAPYRAGPIAREKEKKEIDGMLRAGVIEPTSAEWASPVAFVPKKDGTMPFCVDYRKLNAVTVRDSYPQPRMD 248          
BLAST of Gvermi6788.t1 vs. uniprot
Match: R7QKK5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK5_CHOCR)

HSP 1 Score: 127 bits (319), Expect = 5.750e-32
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVK 96
            ML EF  +W G LGKI  T+HRI+L P  +PI + PYRA P ARE+EK +++++LRAGVIEP  + WASPVV  PK DG+ RFCVDYRKLNA TV+
Sbjct:    3 MLSEFKDMWSGHLGKIDATKHRIELKPGAKPIYQAPYRAGPIAREKEKKEIDRMLRAGVIEPTSAKWASPVVFVPKKDGTMRFCVDYRKLNAVTVE 98          
BLAST of Gvermi6788.t1 vs. uniprot
Match: UPI001E1DEA69 (uncharacterized protein LOC123544193 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEA69)

HSP 1 Score: 124 bits (310), Expect = 4.430e-31
Identity = 57/105 (54.29%), Postives = 71/105 (67.62%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            ML     +WDG LG +  T HRI++    +P+   PYRA   AR  EK +++++L   VIEPA   WASP+VL PKPDGS RFCVDYR+LNA TV D YP+PRMD
Sbjct:  342 MLEPHHKMWDGHLGTVAATSHRIEVTAGAKPVHCQPYRAGSRARSAEKEEIDRMLAEHVIEPATCEWASPIVLVPKPDGSLRFCVDYRRLNAITVPDTYPLPRMD 446          
BLAST of Gvermi6788.t1 vs. uniprot
Match: UPI001E1DE006 (uncharacterized protein LOC123544159 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE006)

HSP 1 Score: 116 bits (291), Expect = 2.960e-29
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPR 103
            ML     +WDG LG +  T HRI++    +P+   PYRA   AR  EK +++++L   VIEPA   WASP+VL PKPDGS RFCVDYR+LNA TV D YP P+
Sbjct:  240 MLEPHHKMWDGHLGTVAATSHRIEVTAGAKPVHCQPYRAGSRARSAEKEEIDRMLAEHVIEPATCEWASPIVLVPKPDGSLRFCVDYRRLNAITVPDTYPPPK 342          
BLAST of Gvermi6788.t1 vs. uniprot
Match: A0A819NFS7_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819NFS7_9BILA)

HSP 1 Score: 112 bits (281), Expect = 5.830e-29
Identity = 46/105 (43.81%), Postives = 77/105 (73.33%), Query Frame = 0
Query:    1 MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            ++++F  +++   G+   T+H+I+L+P  +P + PP+R  PT ++  +  ++++L  G+I P+ SPWASPV+L PK DG+ RFC+DYRKLNA T++D YP+PR+D
Sbjct:   22 LIQQFPDVFNEQPGRTKKTQHQINLVPGAQPFNSPPFRYAPTRKQIIEQNIKEMLDQGIISPSTSPWASPVILVPKKDGNLRFCIDYRKLNAVTIRDAYPLPRID 126          
BLAST of Gvermi6788.t1 vs. uniprot
Match: A0A815E5W6_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815E5W6_9BILA)

HSP 1 Score: 113 bits (282), Expect = 9.620e-29
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0
Query:   21 HRIDLLPDTRPISKPPYRADPTAREEEKAQVEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYPIPRMD 105
            H+I L+PD++P + PPYR  P  R+  +  ++++   G+IEP++SPWASPV+LAPK DGS RFCVDYRKLN+ T++D YPIPR+D
Sbjct:    4 HQIKLMPDSKPYNSPPYRYAPAKRQVIEQNLKEIKEEGIIEPSKSPWASPVILAPKKDGSMRFCVDYRKLNSTTIRDAYPIPRID 88          
The following BLAST results are available for this feature:
BLAST of Gvermi6788.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1D3E389.670e-3962.86uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
R7QHJ7_CHOCR1.540e-3562.24Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QIA9_CHOCR1.660e-3558.10Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DB02D1.600e-3458.10uncharacterized protein LOC123543982 n=1 Tax=Merce... [more]
R7QMC5_CHOCR3.040e-3460.00Integrase catalytic domain-containing protein n=1 ... [more]
R7QKK5_CHOCR5.750e-3261.46Integrase catalytic domain-containing protein n=1 ... [more]
UPI001E1DEA694.430e-3154.29uncharacterized protein LOC123544193 n=1 Tax=Merce... [more]
UPI001E1DE0062.960e-2952.43uncharacterized protein LOC123544159 n=1 Tax=Merce... [more]
A0A819NFS7_9BILA5.830e-2943.81Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A815E5W6_9BILA9.620e-2956.47Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 15..105
e-value: 6.1E-34
score: 118.7
NoneNo IPR availablePANTHERPTHR24559:SF382SUBFAMILY NOT NAMEDcoord: 20..105
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 20..105
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 5..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2288178..2288495 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6788.t1Gvermi6788.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2288178..2288495 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6788.t1 ID=Gvermi6788.t1|Name=Gvermi6788.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=106bp
MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQ
VEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYP
IPRMD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043502DNA/RNA_pol_sf