Gvermi6741.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6741.t1
Unique Name	Gvermi6741.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2133488..2135128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15726052
PFAMs	CHGN
Max annot lvl	33208\|Metazoa
Evalue	6.48e-29
EggNOG OGs	KOG3528@1\|root,KOG3588@1\|root,KOG3528@2759\|Eukaryota,KOG3588@2759\|Eukaryota,38DJN@33154\|Opisthokonta,3BAVK@33208\|Metazoa
Description	peptidoglycan glycosyltransferase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6741	Gvermi6741	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2133488..2135128 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6741.t1.start1	Gvermi6741.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2133488..2133490 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6741.t1.CDS1	Gvermi6741.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2133488..2135128 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6741.t1.exon1	Gvermi6741.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2133488..2135128 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6741.t1.stop1	Gvermi6741.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2135126..2135128 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6741.t1	Gvermi6741.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2133488..2135128 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2133488..2135128+
coding sequence from alignment at ScGOVlb_88:2133488..2135128+

mRNA sequence

>Gvermi6741.t1 ID=Gvermi6741.t1|Name=Gvermi6741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=547bp
MAAGTVFGASRRYRTTSTVPHSQNLSGHRRSPLPKARSQFYRTLAFVSIS
CVIVLGAFFWKPAHQATAPSFQATLSRLSTAQLERFFSAAVPAVSNPSAA
FADRPPRISGGHHDGHAFFMTDDVSDPFFGKCYVASQRSMFHPCLSRGAD
RAEIKARQFAKQPRDFDDVFAVVDEKRFLYHADRPSVHTVDELGAGLDTD
YEDIRKVAISLTQQDVTKGTLNNIHTPVVYMRNTRRDGFQSIVNVRADVE
YFNRNGTKRAAKPKVSRVVTVTKGFGRPCQVHFVRPHESVRIHIIVTYSG
RPGRLDAFFTAFNAYFKKTQTDLLRILVATTKKEEAQVKSKIKKFKQLTQ
NRVSTVQSRGDAQGRFSRAVAIREAAKLVPGKEIMFISDIDVVIRGNFLQ
NCRVNSIMGSQVWFPVMFSLYPYGKSLSSKDGFWRRSSYGMACMYKSDFD
KVGGFGGNEEKAFQGWGAEDVFLYNRFRDNSDYAVLRTLDPGLLHQWHGK
ECPKNEHYKDCMRTVFMTIGSQEAVAKLMADANVDISGLTKDAPPV*

spliced messenger RNA

>Gvermi6741.t1 ID=Gvermi6741.t1|Name=Gvermi6741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_88:2133488..2135128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAGGAACTGTCTTTGGCGCTTCGCGTCGCTATCGCACTACCTC
AACAGTTCCCCACTCCCAAAACCTGTCAGGCCATCGTCGATCTCCCTTGC
CGAAGGCACGTTCTCAGTTCTATCGGACCCTGGCCTTTGTGTCAATATCA
TGTGTCATAGTGCTTGGGGCATTTTTTTGGAAGCCGGCGCATCAAGCCAC
TGCCCCTAGTTTTCAGGCCACTTTGTCTCGGTTGTCGACTGCGCAGTTAG
AGCGTTTCTTCTCAGCTGCAGTGCCTGCCGTATCAAACCCGTCAGCAGCG
TTTGCTGATCGTCCGCCGCGAATAAGTGGCGGTCACCATGATGGCCACGC
CTTCTTCATGACGGACGATGTAAGTGACCCGTTTTTCGGAAAGTGTTATG
TTGCCTCACAACGGTCCATGTTTCATCCGTGTTTGAGTCGCGGTGCGGAT
CGTGCGGAGATCAAGGCGAGACAGTTTGCCAAGCAACCCAGGGATTTTGA
CGATGTGTTCGCCGTCGTGGATGAGAAGAGGTTTCTCTACCACGCTGATC
GACCAAGTGTGCACACGGTTGACGAACTGGGTGCTGGGTTGGACACTGAC
TACGAGGATATCCGAAAGGTTGCCATCTCACTTACCCAACAAGACGTGAC
GAAGGGTACGTTGAACAACATCCATACACCTGTTGTCTACATGCGCAACA
CGCGCCGAGATGGGTTTCAGAGCATCGTCAACGTCCGTGCTGATGTGGAG
TACTTCAACCGCAACGGCACCAAGCGAGCTGCTAAACCGAAAGTGAGTCG
TGTTGTGACGGTCACGAAAGGTTTTGGAAGACCATGTCAAGTGCACTTTG
TACGCCCGCACGAATCAGTGCGCATTCACATAATAGTGACATACTCGGGC
CGACCTGGTAGATTAGATGCTTTCTTCACAGCGTTTAATGCATACTTTAA
AAAGACGCAAACAGACTTACTCCGTATCCTGGTGGCCACGACGAAGAAGG
AGGAAGCACAAGTGAAATCTAAAATCAAAAAGTTTAAGCAGTTAACGCAA
AACAGGGTCAGCACGGTGCAATCACGGGGAGATGCACAGGGTCGATTTTC
ACGTGCTGTGGCAATAAGAGAAGCTGCCAAGCTCGTACCTGGGAAGGAAA
TCATGTTCATTTCAGACATAGATGTGGTGATTCGCGGTAATTTTCTGCAA
AACTGCCGAGTGAATTCCATCATGGGGTCACAGGTGTGGTTTCCCGTCAT
GTTCTCTCTATATCCGTACGGAAAGTCGCTGTCGAGCAAAGACGGGTTTT
GGAGGAGAAGTAGCTATGGAATGGCGTGTATGTACAAGTCTGATTTTGAC
AAAGTTGGGGGTTTTGGAGGGAATGAGGAAAAAGCATTCCAGGGCTGGGG
TGCTGAAGATGTTTTCTTGTACAATCGGTTCCGGGATAACTCAGACTATG
CGGTGCTTAGAACTCTGGACCCGGGGTTGTTACATCAGTGGCATGGTAAG
GAGTGTCCCAAAAACGAACACTACAAAGATTGCATGCGGACGGTTTTCAT
GACTATCGGTAGTCAAGAGGCGGTAGCAAAGTTGATGGCTGATGCCAACG
TGGACATCTCCGGTTTGACCAAGGACGCCCCACCTGTCTAA

protein sequence of Gvermi6741.t1

>Gvermi6741.t1 ID=Gvermi6741.t1|Name=Gvermi6741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=547bp
MAAGTVFGASRRYRTTSTVPHSQNLSGHRRSPLPKARSQFYRTLAFVSIS
CVIVLGAFFWKPAHQATAPSFQATLSRLSTAQLERFFSAAVPAVSNPSAA
FADRPPRISGGHHDGHAFFMTDDVSDPFFGKCYVASQRSMFHPCLSRGAD
RAEIKARQFAKQPRDFDDVFAVVDEKRFLYHADRPSVHTVDELGAGLDTD
YEDIRKVAISLTQQDVTKGTLNNIHTPVVYMRNTRRDGFQSIVNVRADVE
YFNRNGTKRAAKPKVSRVVTVTKGFGRPCQVHFVRPHESVRIHIIVTYSG
RPGRLDAFFTAFNAYFKKTQTDLLRILVATTKKEEAQVKSKIKKFKQLTQ
NRVSTVQSRGDAQGRFSRAVAIREAAKLVPGKEIMFISDIDVVIRGNFLQ
NCRVNSIMGSQVWFPVMFSLYPYGKSLSSKDGFWRRSSYGMACMYKSDFD
KVGGFGGNEEKAFQGWGAEDVFLYNRFRDNSDYAVLRTLDPGLLHQWHGK
ECPKNEHYKDCMRTVFMTIGSQEAVAKLMADANVDISGLTKDAPPV*

mRNA from alignment at ScGOVlb_88:2133488..2135128+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6741.t1 ID=Gvermi6741.t1|Name=Gvermi6741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_88:2133488..2135128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGGAACTGTCTTTGGCGCTTCGCGTCGCTATCGCACTACCTC
AACAGTTCCCCACTCCCAAAACCTGTCAGGCCATCGTCGATCTCCCTTGC
CGAAGGCACGTTCTCAGTTCTATCGGACCCTGGCCTTTGTGTCAATATCA
TGTGTCATAGTGCTTGGGGCATTTTTTTGGAAGCCGGCGCATCAAGCCAC
TGCCCCTAGTTTTCAGGCCACTTTGTCTCGGTTGTCGACTGCGCAGTTAG
AGCGTTTCTTCTCAGCTGCAGTGCCTGCCGTATCAAACCCGTCAGCAGCG
TTTGCTGATCGTCCGCCGCGAATAAGTGGCGGTCACCATGATGGCCACGC
CTTCTTCATGACGGACGATGTAAGTGACCCGTTTTTCGGAAAGTGTTATG
TTGCCTCACAACGGTCCATGTTTCATCCGTGTTTGAGTCGCGGTGCGGAT
CGTGCGGAGATCAAGGCGAGACAGTTTGCCAAGCAACCCAGGGATTTTGA
CGATGTGTTCGCCGTCGTGGATGAGAAGAGGTTTCTCTACCACGCTGATC
GACCAAGTGTGCACACGGTTGACGAACTGGGTGCTGGGTTGGACACTGAC
TACGAGGATATCCGAAAGGTTGCCATCTCACTTACCCAACAAGACGTGAC
GAAGGGTACGTTGAACAACATCCATACACCTGTTGTCTACATGCGCAACA
CGCGCCGAGATGGGTTTCAGAGCATCGTCAACGTCCGTGCTGATGTGGAG
TACTTCAACCGCAACGGCACCAAGCGAGCTGCTAAACCGAAAGTGAGTCG
TGTTGTGACGGTCACGAAAGGTTTTGGAAGACCATGTCAAGTGCACTTTG
TACGCCCGCACGAATCAGTGCGCATTCACATAATAGTGACATACTCGGGC
CGACCTGGTAGATTAGATGCTTTCTTCACAGCGTTTAATGCATACTTTAA
AAAGACGCAAACAGACTTACTCCGTATCCTGGTGGCCACGACGAAGAAGG
AGGAAGCACAAGTGAAATCTAAAATCAAAAAGTTTAAGCAGTTAACGCAA
AACAGGGTCAGCACGGTGCAATCACGGGGAGATGCACAGGGTCGATTTTC
ACGTGCTGTGGCAATAAGAGAAGCTGCCAAGCTCGTACCTGGGAAGGAAA
TCATGTTCATTTCAGACATAGATGTGGTGATTCGCGGTAATTTTCTGCAA
AACTGCCGAGTGAATTCCATCATGGGGTCACAGGTGTGGTTTCCCGTCAT
GTTCTCTCTATATCCGTACGGAAAGTCGCTGTCGAGCAAAGACGGGTTTT
GGAGGAGAAGTAGCTATGGAATGGCGTGTATGTACAAGTCTGATTTTGAC
AAAGTTGGGGGTTTTGGAGGGAATGAGGAAAAAGCATTCCAGGGCTGGGG
TGCTGAAGATGTTTTCTTGTACAATCGGTTCCGGGATAACTCAGACTATG
CGGTGCTTAGAACTCTGGACCCGGGGTTGTTACATCAGTGGCATGGTAAG
GAGTGTCCCAAAAACGAACACTACAAAGATTGCATGCGGACGGTTTTCAT
GACTATCGGTAGTCAAGAGGCGGTAGCAAAGTTGATGGCTGATGCCAACG
TGGACATCTCCGGTTTGACCAAGGACGCCCCACCTGTCTAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2133488..2135128+

>Gvermi6741.t1 ID=Gvermi6741.t1|Name=Gvermi6741.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1641bp|location=Sequence derived from alignment at ScGOVlb_88:2133488..2135128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCAGGAACTGTCTTTGGCGCTTCGCGTCGCTATCGCACTACCTC
AACAGTTCCCCACTCCCAAAACCTGTCAGGCCATCGTCGATCTCCCTTGC
CGAAGGCACGTTCTCAGTTCTATCGGACCCTGGCCTTTGTGTCAATATCA
TGTGTCATAGTGCTTGGGGCATTTTTTTGGAAGCCGGCGCATCAAGCCAC
TGCCCCTAGTTTTCAGGCCACTTTGTCTCGGTTGTCGACTGCGCAGTTAG
AGCGTTTCTTCTCAGCTGCAGTGCCTGCCGTATCAAACCCGTCAGCAGCG
TTTGCTGATCGTCCGCCGCGAATAAGTGGCGGTCACCATGATGGCCACGC
CTTCTTCATGACGGACGATGTAAGTGACCCGTTTTTCGGAAAGTGTTATG
TTGCCTCACAACGGTCCATGTTTCATCCGTGTTTGAGTCGCGGTGCGGAT
CGTGCGGAGATCAAGGCGAGACAGTTTGCCAAGCAACCCAGGGATTTTGA
CGATGTGTTCGCCGTCGTGGATGAGAAGAGGTTTCTCTACCACGCTGATC
GACCAAGTGTGCACACGGTTGACGAACTGGGTGCTGGGTTGGACACTGAC
TACGAGGATATCCGAAAGGTTGCCATCTCACTTACCCAACAAGACGTGAC
GAAGGGTACGTTGAACAACATCCATACACCTGTTGTCTACATGCGCAACA
CGCGCCGAGATGGGTTTCAGAGCATCGTCAACGTCCGTGCTGATGTGGAG
TACTTCAACCGCAACGGCACCAAGCGAGCTGCTAAACCGAAAGTGAGTCG
TGTTGTGACGGTCACGAAAGGTTTTGGAAGACCATGTCAAGTGCACTTTG
TACGCCCGCACGAATCAGTGCGCATTCACATAATAGTGACATACTCGGGC
CGACCTGGTAGATTAGATGCTTTCTTCACAGCGTTTAATGCATACTTTAA
AAAGACGCAAACAGACTTACTCCGTATCCTGGTGGCCACGACGAAGAAGG
AGGAAGCACAAGTGAAATCTAAAATCAAAAAGTTTAAGCAGTTAACGCAA
AACAGGGTCAGCACGGTGCAATCACGGGGAGATGCACAGGGTCGATTTTC
ACGTGCTGTGGCAATAAGAGAAGCTGCCAAGCTCGTACCTGGGAAGGAAA
TCATGTTCATTTCAGACATAGATGTGGTGATTCGCGGTAATTTTCTGCAA
AACTGCCGAGTGAATTCCATCATGGGGTCACAGGTGTGGTTTCCCGTCAT
GTTCTCTCTATATCCGTACGGAAAGTCGCTGTCGAGCAAAGACGGGTTTT
GGAGGAGAAGTAGCTATGGAATGGCGTGTATGTACAAGTCTGATTTTGAC
AAAGTTGGGGGTTTTGGAGGGAATGAGGAAAAAGCATTCCAGGGCTGGGG
TGCTGAAGATGTTTTCTTGTACAATCGGTTCCGGGATAACTCAGACTATG
CGGTGCTTAGAACTCTGGACCCGGGGTTGTTACATCAGTGGCATGGTAAG
GAGTGTCCCAAAAACGAACACTACAAAGATTGCATGCGGACGGTTTTCAT
GACTATCGGTAGTCAAGAGGCGGTAGCAAAGTTGATGGCTGATGCCAACG
TGGACATCTCCGGTTTGACCAAGGACGCCCCACCTGTCTAA