Gvermi6708.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6708.t1
Unique NameGvermi6708.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2003575..2004876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_92773
Preferred nameNMT1
PFAMsNMT,NMT_C
Max annot lvl2759|Eukaryota
KEGG koko:K00671,ko:K02218
KEGG Pathwayko04011,ko04392,map04011,map04392
GOsGO:0003674,GO:0003824,GO:0004379,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006464,GO:0006497,GO:0006498,GO:0006499,GO:0006807,GO:0006810,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007275,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009966,GO:0009967,GO:0009987,GO:0010016,GO:0010064,GO:0010638,GO:0010646,GO:0010647,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0016020,GO:0016043,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0018008,GO:0018193,GO:0018201,GO:0018377,GO:0019107,GO:0019538,GO:0019898,GO:0022400,GO:0023051,GO:0023056,GO:0031365,GO:0032101,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0034645,GO:0036211,GO:0040007,GO:0042157,GO:0042158,GO:0042180,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046902,GO:0048367,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070201,GO:0071704,GO:0071840,GO:0071944,GO:0090559,GO:1900739,GO:1900740,GO:1901028,GO:1901030,GO:1901564,GO:1901566,GO:1901576,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1904951,GO:1905475,GO:1905477,GO:1990904,GO:2001233,GO:2001235
Evalue2.87e-145
EggNOG OGsCOG5092@1|root,KOG2779@2759|Eukaryota
EC2.3.1.97,2.7.11.1
DescriptionAdds a myristoyl group to the N-terminal glycine residue of certain cellular proteins
COG categoryI
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6708Gvermi6708Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2003575..2004876 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6708.t1.stop1Gvermi6708.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2003575..2003577 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6708.t1.CDS1Gvermi6708.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2003575..2004876 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6708.t1.exon1Gvermi6708.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2003575..2004876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6708.t1.start1Gvermi6708.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2004874..2004876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6708.t1Gvermi6708.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2003575..2004876 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6708.t1 ID=Gvermi6708.t1|Name=Gvermi6708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=434bp
MADRPQPAATPVRQVELSGADARAKLAELLANASLSASATDPAQHRFWST
QPVPQIPHDAYPPQPTDHAGEPIETKNVADVPTQPYALIDSFEWCDIDVN
DDKQLEDAYRLLNENYVEDGASMFRFDYSRQFLRWALLPPGWHPSWHIGV
RVKSNKKLVAFITAIPATIAVHSKSLPMVEINFLCVHKKLRSKRLAPVLI
REITRRVNLRGIWQAVYTAGAVLPQPISSSRYYHRSLNAKKLIETGFSRL
KPRMTMARTIRLYSLKSHTQIPGIRVMRDSDVSEACALLKEHISQFELHV
DMTADDFRHWLLPREDVMYTYVVEDPNTHSITDLISFYSLPSSVINHPVH
KTLRAAYAFCIVPHKSSIQALVGDALILARNNKFDVFNALELGHNAQFFN
DLKFHKGDGTLNYYLYNWKCRPIPQENNALVLL*
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spliced messenger RNA

>Gvermi6708.t1 ID=Gvermi6708.t1|Name=Gvermi6708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at ScGOVlb_88:2003575..2004876- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATCGACCGCAGCCCGCCGCCACTCCCGTGCGCCAAGTCGAGCT
CTCCGGCGCCGACGCTCGCGCCAAGCTCGCCGAGCTGCTCGCCAACGCCT
CTCTGTCCGCCTCTGCCACCGACCCCGCCCAGCATCGCTTCTGGAGCACC
CAGCCGGTGCCGCAGATCCCCCACGACGCTTACCCGCCCCAACCTACTGA
CCACGCGGGCGAGCCAATCGAGACCAAGAACGTCGCCGATGTGCCCACCC
AACCGTACGCCCTCATCGACTCCTTCGAATGGTGCGACATCGACGTCAAC
GACGACAAGCAGCTCGAGGACGCCTACCGCCTTCTCAACGAGAATTACGT
CGAGGACGGCGCCTCCATGTTTCGCTTCGACTACTCGCGCCAGTTCCTGC
GCTGGGCGTTGCTTCCGCCCGGCTGGCACCCCAGCTGGCACATCGGCGTG
CGCGTCAAGAGCAACAAGAAGCTAGTTGCATTCATCACCGCCATTCCGGC
CACAATTGCCGTGCATTCCAAGTCGCTCCCAATGGTCGAGATCAATTTTC
TGTGCGTCCACAAGAAGCTTCGCTCCAAGCGCCTGGCACCCGTCCTCATC
CGCGAGATCACGCGACGCGTCAATCTGCGCGGCATTTGGCAGGCCGTCTA
CACCGCCGGCGCCGTCTTGCCGCAGCCCATTTCGTCCTCGCGCTACTACC
ACCGCTCCCTCAACGCCAAAAAGCTCATCGAGACGGGCTTCTCGAGGCTC
AAGCCGCGTATGACCATGGCGCGCACCATCAGACTCTACTCTCTCAAGTC
TCACACCCAAATCCCCGGCATTCGAGTCATGCGAGACTCCGATGTGTCCG
AGGCCTGTGCCTTGCTCAAGGAGCACATTTCCCAGTTTGAGCTCCATGTT
GATATGACTGCCGACGACTTCCGCCACTGGCTCTTGCCCCGCGAAGACGT
CATGTATACATATGTCGTCGAAGATCCTAACACCCATTCCATAACCGATC
TCATCTCCTTCTACTCCTTGCCTTCGAGTGTCATCAACCACCCTGTGCAC
AAAACCCTCCGAGCTGCGTATGCTTTCTGCATTGTTCCTCACAAGTCTTC
CATCCAGGCTCTCGTGGGCGACGCGTTGATTTTGGCTCGCAACAACAAGT
TTGACGTCTTCAACGCGCTGGAACTTGGACACAATGCTCAGTTTTTTAAC
GACCTTAAATTCCACAAAGGAGACGGTACCTTGAATTATTATCTTTACAA
CTGGAAATGTCGCCCTATTCCGCAGGAGAACAACGCTCTTGTGCTACTTT
AG
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protein sequence of Gvermi6708.t1

>Gvermi6708.t1 ID=Gvermi6708.t1|Name=Gvermi6708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=434bp
MADRPQPAATPVRQVELSGADARAKLAELLANASLSASATDPAQHRFWST
QPVPQIPHDAYPPQPTDHAGEPIETKNVADVPTQPYALIDSFEWCDIDVN
DDKQLEDAYRLLNENYVEDGASMFRFDYSRQFLRWALLPPGWHPSWHIGV
RVKSNKKLVAFITAIPATIAVHSKSLPMVEINFLCVHKKLRSKRLAPVLI
REITRRVNLRGIWQAVYTAGAVLPQPISSSRYYHRSLNAKKLIETGFSRL
KPRMTMARTIRLYSLKSHTQIPGIRVMRDSDVSEACALLKEHISQFELHV
DMTADDFRHWLLPREDVMYTYVVEDPNTHSITDLISFYSLPSSVINHPVH
KTLRAAYAFCIVPHKSSIQALVGDALILARNNKFDVFNALELGHNAQFFN
DLKFHKGDGTLNYYLYNWKCRPIPQENNALVLL*
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mRNA from alignment at ScGOVlb_88:2003575..2004876-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6708.t1 ID=Gvermi6708.t1|Name=Gvermi6708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at ScGOVlb_88:2003575..2004876- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGATCGACCGCAGCCCGCCGCCACTCCCGTGCGCCAAGTCGAGCT
CTCCGGCGCCGACGCTCGCGCCAAGCTCGCCGAGCTGCTCGCCAACGCCT
CTCTGTCCGCCTCTGCCACCGACCCCGCCCAGCATCGCTTCTGGAGCACC
CAGCCGGTGCCGCAGATCCCCCACGACGCTTACCCGCCCCAACCTACTGA
CCACGCGGGCGAGCCAATCGAGACCAAGAACGTCGCCGATGTGCCCACCC
AACCGTACGCCCTCATCGACTCCTTCGAATGGTGCGACATCGACGTCAAC
GACGACAAGCAGCTCGAGGACGCCTACCGCCTTCTCAACGAGAATTACGT
CGAGGACGGCGCCTCCATGTTTCGCTTCGACTACTCGCGCCAGTTCCTGC
GCTGGGCGTTGCTTCCGCCCGGCTGGCACCCCAGCTGGCACATCGGCGTG
CGCGTCAAGAGCAACAAGAAGCTAGTTGCATTCATCACCGCCATTCCGGC
CACAATTGCCGTGCATTCCAAGTCGCTCCCAATGGTCGAGATCAATTTTC
TGTGCGTCCACAAGAAGCTTCGCTCCAAGCGCCTGGCACCCGTCCTCATC
CGCGAGATCACGCGACGCGTCAATCTGCGCGGCATTTGGCAGGCCGTCTA
CACCGCCGGCGCCGTCTTGCCGCAGCCCATTTCGTCCTCGCGCTACTACC
ACCGCTCCCTCAACGCCAAAAAGCTCATCGAGACGGGCTTCTCGAGGCTC
AAGCCGCGTATGACCATGGCGCGCACCATCAGACTCTACTCTCTCAAGTC
TCACACCCAAATCCCCGGCATTCGAGTCATGCGAGACTCCGATGTGTCCG
AGGCCTGTGCCTTGCTCAAGGAGCACATTTCCCAGTTTGAGCTCCATGTT
GATATGACTGCCGACGACTTCCGCCACTGGCTCTTGCCCCGCGAAGACGT
CATGTATACATATGTCGTCGAAGATCCTAACACCCATTCCATAACCGATC
TCATCTCCTTCTACTCCTTGCCTTCGAGTGTCATCAACCACCCTGTGCAC
AAAACCCTCCGAGCTGCGTATGCTTTCTGCATTGTTCCTCACAAGTCTTC
CATCCAGGCTCTCGTGGGCGACGCGTTGATTTTGGCTCGCAACAACAAGT
TTGACGTCTTCAACGCGCTGGAACTTGGACACAATGCTCAGTTTTTTAAC
GACCTTAAATTCCACAAAGGAGACGGTACCTTGAATTATTATCTTTACAA
CTGGAAATGTCGCCCTATTCCGCAGGAGAACAACGCTCTTGTGCTACTTT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2003575..2004876-

>Gvermi6708.t1 ID=Gvermi6708.t1|Name=Gvermi6708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1302bp|location=Sequence derived from alignment at ScGOVlb_88:2003575..2004876- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGATCGACCGCAGCCCGCCGCCACTCCCGTGCGCCAAGTCGAGCT
CTCCGGCGCCGACGCTCGCGCCAAGCTCGCCGAGCTGCTCGCCAACGCCT
CTCTGTCCGCCTCTGCCACCGACCCCGCCCAGCATCGCTTCTGGAGCACC
CAGCCGGTGCCGCAGATCCCCCACGACGCTTACCCGCCCCAACCTACTGA
CCACGCGGGCGAGCCAATCGAGACCAAGAACGTCGCCGATGTGCCCACCC
AACCGTACGCCCTCATCGACTCCTTCGAATGGTGCGACATCGACGTCAAC
GACGACAAGCAGCTCGAGGACGCCTACCGCCTTCTCAACGAGAATTACGT
CGAGGACGGCGCCTCCATGTTTCGCTTCGACTACTCGCGCCAGTTCCTGC
GCTGGGCGTTGCTTCCGCCCGGCTGGCACCCCAGCTGGCACATCGGCGTG
CGCGTCAAGAGCAACAAGAAGCTAGTTGCATTCATCACCGCCATTCCGGC
CACAATTGCCGTGCATTCCAAGTCGCTCCCAATGGTCGAGATCAATTTTC
TGTGCGTCCACAAGAAGCTTCGCTCCAAGCGCCTGGCACCCGTCCTCATC
CGCGAGATCACGCGACGCGTCAATCTGCGCGGCATTTGGCAGGCCGTCTA
CACCGCCGGCGCCGTCTTGCCGCAGCCCATTTCGTCCTCGCGCTACTACC
ACCGCTCCCTCAACGCCAAAAAGCTCATCGAGACGGGCTTCTCGAGGCTC
AAGCCGCGTATGACCATGGCGCGCACCATCAGACTCTACTCTCTCAAGTC
TCACACCCAAATCCCCGGCATTCGAGTCATGCGAGACTCCGATGTGTCCG
AGGCCTGTGCCTTGCTCAAGGAGCACATTTCCCAGTTTGAGCTCCATGTT
GATATGACTGCCGACGACTTCCGCCACTGGCTCTTGCCCCGCGAAGACGT
CATGTATACATATGTCGTCGAAGATCCTAACACCCATTCCATAACCGATC
TCATCTCCTTCTACTCCTTGCCTTCGAGTGTCATCAACCACCCTGTGCAC
AAAACCCTCCGAGCTGCGTATGCTTTCTGCATTGTTCCTCACAAGTCTTC
CATCCAGGCTCTCGTGGGCGACGCGTTGATTTTGGCTCGCAACAACAAGT
TTGACGTCTTCAACGCGCTGGAACTTGGACACAATGCTCAGTTTTTTAAC
GACCTTAAATTCCACAAAGGAGACGGTACCTTGAATTATTATCTTTACAA
CTGGAAATGTCGCCCTATTCCGCAGGAGAACAACGCTCTTGTGCTACTTT
AG
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