Gvermi1897.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1897.t1
Unique NameGvermi1897.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:1593426..1594946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1236902.ANAS01000038_gene3035
PFAMsInhibitor_I9,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue2.39e-21
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,2GJYH@201174|Actinobacteria,4EI5B@85012|Streptosporangiales
DescriptionPeptidase inhibitor I9
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1897Gvermi1897Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 1593426..1594946 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1897.t1.stop1Gvermi1897.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 1593426..1593428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1897.t1.CDS1Gvermi1897.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1593426..1594946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1897.t1.exon1Gvermi1897.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1593426..1594946 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1897.t1.start1Gvermi1897.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 1594944..1594946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1897.t1Gvermi1897.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 1593426..1594946 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1897.t1 ID=Gvermi1897.t1|Name=Gvermi1897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MMGRILCVLVLLTSSLSTVLKATENTTDLNVGMPMPLPSPEREALDDDST
MTTLENQADRNAGMSSALLSPEPEPVDDDGIIPNEFLMQISASCDDNCHT
DVQTLISANNLTEGCIIGETGIDIGSVHFVSFMCDIEELRDLPPYRLKAF
SKEIALTAVPALAKAGTRPMAIENSFTVSIPVSSNDLPIPIDPPFSGCAF
NSSRGFPFRGGTLVPRKPITSPPVSCDLFGIDETDGGFPRDGLRTCASLS
MNGRDVSIWVLDTGCEPSSQGQCLDYSSGSEIADSCADTVGHGTRVSDIA
TGANGVATEGTRHCLRVLDGGTGSWANVLRALGFVSSNLNLTPRGNVINL
SLSGPITTGLNRDLAEDILNELAILGVFVTAAAGNDGENACSRIPAFFRN
ERFFSVQAHDSDGVPFEDNNISEPEQDCVDISAPGVDLFSSLPSGGTSFA
TAHVSGAIAVLLSDEREVSLNALTSISRLIENGPGNIDEPSLGISCPVSM
EMSKAY*
back to top

spliced messenger RNA

>Gvermi1897.t1 ID=Gvermi1897.t1|Name=Gvermi1897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_1622:1593426..1594946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGGCAGGATTCTATGCGTTCTAGTACTGCTGACTTCGTCTTTGTC
AACCGTTCTGAAGGCAACAGAGAATACGACAGACCTGAACGTGGGGATGC
CCATGCCACTTCCCTCTCCTGAGCGAGAAGCACTGGATGATGATAGTACC
ATGACGACATTAGAGAATCAGGCAGATCGTAATGCAGGGATGTCTTCGGC
ACTCCTCTCTCCTGAGCCTGAACCAGTGGATGATGATGGTATCATACCTA
ACGAGTTCCTGATGCAAATCTCCGCTTCATGTGACGATAACTGTCACACG
GATGTGCAGACTCTAATTAGTGCGAACAACCTGACCGAAGGTTGCATAAT
CGGCGAAACGGGAATCGACATAGGCTCGGTCCACTTCGTATCATTTATGT
GCGACATTGAAGAGCTACGGGATCTTCCTCCTTATCGGCTCAAGGCCTTT
TCAAAGGAGATAGCGCTTACCGCGGTCCCGGCTCTGGCTAAAGCCGGTAC
ACGGCCGATGGCCATTGAAAACAGCTTCACAGTATCAATACCAGTTTCAT
CAAACGATCTTCCCATACCGATCGATCCGCCATTTTCCGGCTGTGCATTC
AACAGTTCTCGGGGTTTTCCTTTCCGAGGAGGCACGCTTGTTCCACGGAA
ACCGATAACATCGCCCCCAGTATCGTGCGATCTTTTTGGAATTGACGAGA
CAGATGGTGGCTTCCCCAGAGATGGCCTCCGTACATGCGCTTCTCTCAGT
ATGAACGGTCGAGACGTGAGCATATGGGTTCTGGACACCGGATGTGAGCC
GTCGAGCCAAGGACAGTGTCTCGACTATAGTTCGGGATCAGAGATTGCAG
ATAGTTGCGCAGATACCGTAGGTCATGGGACGCGTGTAAGTGATATTGCC
ACCGGGGCTAATGGCGTGGCAACGGAGGGCACCCGACATTGCTTGCGGGT
GTTAGATGGCGGTACAGGGAGTTGGGCAAATGTACTGCGGGCATTGGGTT
TTGTTTCAAGCAACCTGAACCTAACACCAAGGGGGAATGTCATCAATCTC
TCTCTGTCGGGCCCAATAACCACCGGATTGAATAGGGATTTGGCTGAGGA
TATTCTGAATGAGTTGGCGATCTTAGGCGTTTTTGTCACCGCGGCAGCAG
GCAATGATGGAGAAAATGCGTGTTCTCGAATACCAGCCTTCTTTCGGAAC
GAACGGTTCTTTAGCGTACAAGCGCATGATAGTGACGGAGTTCCTTTCGA
AGACAATAATATTTCTGAGCCAGAGCAAGATTGCGTGGATATATCTGCGC
CCGGAGTTGACCTGTTTTCTTCACTGCCCAGTGGTGGAACGTCTTTCGCA
ACAGCGCATGTAAGTGGGGCGATTGCTGTCTTGCTCTCTGATGAAAGAGA
GGTGTCGCTGAATGCGTTGACTAGCATAAGCCGATTAATCGAAAATGGCC
CTGGCAACATTGATGAACCATCTTTGGGAATTTCGTGCCCTGTTAGTATG
GAAATGTCAAAGGCATATTAA
back to top

protein sequence of Gvermi1897.t1

>Gvermi1897.t1 ID=Gvermi1897.t1|Name=Gvermi1897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MMGRILCVLVLLTSSLSTVLKATENTTDLNVGMPMPLPSPEREALDDDST
MTTLENQADRNAGMSSALLSPEPEPVDDDGIIPNEFLMQISASCDDNCHT
DVQTLISANNLTEGCIIGETGIDIGSVHFVSFMCDIEELRDLPPYRLKAF
SKEIALTAVPALAKAGTRPMAIENSFTVSIPVSSNDLPIPIDPPFSGCAF
NSSRGFPFRGGTLVPRKPITSPPVSCDLFGIDETDGGFPRDGLRTCASLS
MNGRDVSIWVLDTGCEPSSQGQCLDYSSGSEIADSCADTVGHGTRVSDIA
TGANGVATEGTRHCLRVLDGGTGSWANVLRALGFVSSNLNLTPRGNVINL
SLSGPITTGLNRDLAEDILNELAILGVFVTAAAGNDGENACSRIPAFFRN
ERFFSVQAHDSDGVPFEDNNISEPEQDCVDISAPGVDLFSSLPSGGTSFA
TAHVSGAIAVLLSDEREVSLNALTSISRLIENGPGNIDEPSLGISCPVSM
EMSKAY*
back to top

mRNA from alignment at ScGOVlb_1622:1593426..1594946-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1897.t1 ID=Gvermi1897.t1|Name=Gvermi1897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_1622:1593426..1594946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGGCAGGATTCTATGCGTTCTAGTACTGCTGACTTCGTCTTTGTC
AACCGTTCTGAAGGCAACAGAGAATACGACAGACCTGAACGTGGGGATGC
CCATGCCACTTCCCTCTCCTGAGCGAGAAGCACTGGATGATGATAGTACC
ATGACGACATTAGAGAATCAGGCAGATCGTAATGCAGGGATGTCTTCGGC
ACTCCTCTCTCCTGAGCCTGAACCAGTGGATGATGATGGTATCATACCTA
ACGAGTTCCTGATGCAAATCTCCGCTTCATGTGACGATAACTGTCACACG
GATGTGCAGACTCTAATTAGTGCGAACAACCTGACCGAAGGTTGCATAAT
CGGCGAAACGGGAATCGACATAGGCTCGGTCCACTTCGTATCATTTATGT
GCGACATTGAAGAGCTACGGGATCTTCCTCCTTATCGGCTCAAGGCCTTT
TCAAAGGAGATAGCGCTTACCGCGGTCCCGGCTCTGGCTAAAGCCGGTAC
ACGGCCGATGGCCATTGAAAACAGCTTCACAGTATCAATACCAGTTTCAT
CAAACGATCTTCCCATACCGATCGATCCGCCATTTTCCGGCTGTGCATTC
AACAGTTCTCGGGGTTTTCCTTTCCGAGGAGGCACGCTTGTTCCACGGAA
ACCGATAACATCGCCCCCAGTATCGTGCGATCTTTTTGGAATTGACGAGA
CAGATGGTGGCTTCCCCAGAGATGGCCTCCGTACATGCGCTTCTCTCAGT
ATGAACGGTCGAGACGTGAGCATATGGGTTCTGGACACCGGATGTGAGCC
GTCGAGCCAAGGACAGTGTCTCGACTATAGTTCGGGATCAGAGATTGCAG
ATAGTTGCGCAGATACCGTAGGTCATGGGACGCGTGTAAGTGATATTGCC
ACCGGGGCTAATGGCGTGGCAACGGAGGGCACCCGACATTGCTTGCGGGT
GTTAGATGGCGGTACAGGGAGTTGGGCAAATGTACTGCGGGCATTGGGTT
TTGTTTCAAGCAACCTGAACCTAACACCAAGGGGGAATGTCATCAATCTC
TCTCTGTCGGGCCCAATAACCACCGGATTGAATAGGGATTTGGCTGAGGA
TATTCTGAATGAGTTGGCGATCTTAGGCGTTTTTGTCACCGCGGCAGCAG
GCAATGATGGAGAAAATGCGTGTTCTCGAATACCAGCCTTCTTTCGGAAC
GAACGGTTCTTTAGCGTACAAGCGCATGATAGTGACGGAGTTCCTTTCGA
AGACAATAATATTTCTGAGCCAGAGCAAGATTGCGTGGATATATCTGCGC
CCGGAGTTGACCTGTTTTCTTCACTGCCCAGTGGTGGAACGTCTTTCGCA
ACAGCGCATGTAAGTGGGGCGATTGCTGTCTTGCTCTCTGATGAAAGAGA
GGTGTCGCTGAATGCGTTGACTAGCATAAGCCGATTAATCGAAAATGGCC
CTGGCAACATTGATGAACCATCTTTGGGAATTTCGTGCCCTGTTAGTATG
GAAATGTCAAAGGCATATTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_1622:1593426..1594946-

>Gvermi1897.t1 ID=Gvermi1897.t1|Name=Gvermi1897.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_1622:1593426..1594946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGGCAGGATTCTATGCGTTCTAGTACTGCTGACTTCGTCTTTGTC
AACCGTTCTGAAGGCAACAGAGAATACGACAGACCTGAACGTGGGGATGC
CCATGCCACTTCCCTCTCCTGAGCGAGAAGCACTGGATGATGATAGTACC
ATGACGACATTAGAGAATCAGGCAGATCGTAATGCAGGGATGTCTTCGGC
ACTCCTCTCTCCTGAGCCTGAACCAGTGGATGATGATGGTATCATACCTA
ACGAGTTCCTGATGCAAATCTCCGCTTCATGTGACGATAACTGTCACACG
GATGTGCAGACTCTAATTAGTGCGAACAACCTGACCGAAGGTTGCATAAT
CGGCGAAACGGGAATCGACATAGGCTCGGTCCACTTCGTATCATTTATGT
GCGACATTGAAGAGCTACGGGATCTTCCTCCTTATCGGCTCAAGGCCTTT
TCAAAGGAGATAGCGCTTACCGCGGTCCCGGCTCTGGCTAAAGCCGGTAC
ACGGCCGATGGCCATTGAAAACAGCTTCACAGTATCAATACCAGTTTCAT
CAAACGATCTTCCCATACCGATCGATCCGCCATTTTCCGGCTGTGCATTC
AACAGTTCTCGGGGTTTTCCTTTCCGAGGAGGCACGCTTGTTCCACGGAA
ACCGATAACATCGCCCCCAGTATCGTGCGATCTTTTTGGAATTGACGAGA
CAGATGGTGGCTTCCCCAGAGATGGCCTCCGTACATGCGCTTCTCTCAGT
ATGAACGGTCGAGACGTGAGCATATGGGTTCTGGACACCGGATGTGAGCC
GTCGAGCCAAGGACAGTGTCTCGACTATAGTTCGGGATCAGAGATTGCAG
ATAGTTGCGCAGATACCGTAGGTCATGGGACGCGTGTAAGTGATATTGCC
ACCGGGGCTAATGGCGTGGCAACGGAGGGCACCCGACATTGCTTGCGGGT
GTTAGATGGCGGTACAGGGAGTTGGGCAAATGTACTGCGGGCATTGGGTT
TTGTTTCAAGCAACCTGAACCTAACACCAAGGGGGAATGTCATCAATCTC
TCTCTGTCGGGCCCAATAACCACCGGATTGAATAGGGATTTGGCTGAGGA
TATTCTGAATGAGTTGGCGATCTTAGGCGTTTTTGTCACCGCGGCAGCAG
GCAATGATGGAGAAAATGCGTGTTCTCGAATACCAGCCTTCTTTCGGAAC
GAACGGTTCTTTAGCGTACAAGCGCATGATAGTGACGGAGTTCCTTTCGA
AGACAATAATATTTCTGAGCCAGAGCAAGATTGCGTGGATATATCTGCGC
CCGGAGTTGACCTGTTTTCTTCACTGCCCAGTGGTGGAACGTCTTTCGCA
ACAGCGCATGTAAGTGGGGCGATTGCTGTCTTGCTCTCTGATGAAAGAGA
GGTGTCGCTGAATGCGTTGACTAGCATAAGCCGATTAATCGAAAATGGCC
CTGGCAACATTGATGAACCATCTTTGGGAATTTCGTGCCCTGTTAGTATG
GAAATGTCAAAGGCATATTAA
back to top