Gvermi6635.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6635.t1
Unique NameGvermi6635.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1790042..1790554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706016.1
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K12734
Evalue4.48e-48
EggNOG OGsCOG0652@1|root,KOG0884@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6635Gvermi6635Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1790042..1790554 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6635.t1.stop1Gvermi6635.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1790042..1790044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6635.t1.CDS1Gvermi6635.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1790042..1790554 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6635.t1.exon1Gvermi6635.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1790042..1790554 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6635.t1.start1Gvermi6635.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1790552..1790554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6635.t1Gvermi6635.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1790042..1790554 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6635.t1 ID=Gvermi6635.t1|Name=Gvermi6635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=171bp
MSLTLATDCGLIKVELFCRLVPRSAANFLALCASGKYDGTPFHRVIAGFI
VQAGDPTGAGNVSRAAFAKRLPDEIHPRLNFDQPGMVAFANSGRASSKGV
GSQFFITLGKASHLDGTCTIVGRVIHGMDAVRRIAAVECQENRPVSPVLV
RSVTIHANPFADGSIAYDVK*
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spliced messenger RNA

>Gvermi6635.t1 ID=Gvermi6635.t1|Name=Gvermi6635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp|location=Sequence derived from alignment at ScGOVlb_88:1790042..1790554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTAACGTTGGCAACCGATTGCGGCCTTATCAAAGTGGAGCTGTT
CTGTCGCCTCGTTCCGCGCTCGGCCGCTAACTTTCTCGCGCTGTGCGCGA
GTGGCAAGTACGACGGCACCCCGTTCCACCGTGTGATTGCGGGCTTCATC
GTGCAAGCTGGTGACCCAACGGGCGCCGGCAATGTCTCGCGTGCCGCTTT
TGCCAAGCGGCTCCCTGATGAGATCCACCCCCGCCTCAACTTTGACCAGC
CCGGCATGGTGGCCTTCGCAAACTCTGGCCGCGCCAGCTCCAAGGGCGTA
GGCAGCCAGTTCTTCATCACGCTGGGGAAGGCGTCGCATCTGGATGGCAC
TTGCACCATCGTCGGTCGCGTTATACACGGCATGGACGCCGTGCGCCGAA
TTGCCGCCGTCGAATGCCAAGAAAACCGTCCAGTATCACCAGTTTTGGTG
CGCTCTGTCACCATTCACGCCAATCCCTTTGCAGATGGTTCGATTGCTTA
TGACGTGAAATGA
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protein sequence of Gvermi6635.t1

>Gvermi6635.t1 ID=Gvermi6635.t1|Name=Gvermi6635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=171bp
MSLTLATDCGLIKVELFCRLVPRSAANFLALCASGKYDGTPFHRVIAGFI
VQAGDPTGAGNVSRAAFAKRLPDEIHPRLNFDQPGMVAFANSGRASSKGV
GSQFFITLGKASHLDGTCTIVGRVIHGMDAVRRIAAVECQENRPVSPVLV
RSVTIHANPFADGSIAYDVK*
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mRNA from alignment at ScGOVlb_88:1790042..1790554-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6635.t1 ID=Gvermi6635.t1|Name=Gvermi6635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp|location=Sequence derived from alignment at ScGOVlb_88:1790042..1790554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCTAACGTTGGCAACCGATTGCGGCCTTATCAAAGTGGAGCTGTT
CTGTCGCCTCGTTCCGCGCTCGGCCGCTAACTTTCTCGCGCTGTGCGCGA
GTGGCAAGTACGACGGCACCCCGTTCCACCGTGTGATTGCGGGCTTCATC
GTGCAAGCTGGTGACCCAACGGGCGCCGGCAATGTCTCGCGTGCCGCTTT
TGCCAAGCGGCTCCCTGATGAGATCCACCCCCGCCTCAACTTTGACCAGC
CCGGCATGGTGGCCTTCGCAAACTCTGGCCGCGCCAGCTCCAAGGGCGTA
GGCAGCCAGTTCTTCATCACGCTGGGGAAGGCGTCGCATCTGGATGGCAC
TTGCACCATCGTCGGTCGCGTTATACACGGCATGGACGCCGTGCGCCGAA
TTGCCGCCGTCGAATGCCAAGAAAACCGTCCAGTATCACCAGTTTTGGTG
CGCTCTGTCACCATTCACGCCAATCCCTTTGCAGATGGTTCGATTGCTTA
TGACGTGAAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1790042..1790554-

>Gvermi6635.t1 ID=Gvermi6635.t1|Name=Gvermi6635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=513bp|location=Sequence derived from alignment at ScGOVlb_88:1790042..1790554- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCTAACGTTGGCAACCGATTGCGGCCTTATCAAAGTGGAGCTGTT
CTGTCGCCTCGTTCCGCGCTCGGCCGCTAACTTTCTCGCGCTGTGCGCGA
GTGGCAAGTACGACGGCACCCCGTTCCACCGTGTGATTGCGGGCTTCATC
GTGCAAGCTGGTGACCCAACGGGCGCCGGCAATGTCTCGCGTGCCGCTTT
TGCCAAGCGGCTCCCTGATGAGATCCACCCCCGCCTCAACTTTGACCAGC
CCGGCATGGTGGCCTTCGCAAACTCTGGCCGCGCCAGCTCCAAGGGCGTA
GGCAGCCAGTTCTTCATCACGCTGGGGAAGGCGTCGCATCTGGATGGCAC
TTGCACCATCGTCGGTCGCGTTATACACGGCATGGACGCCGTGCGCCGAA
TTGCCGCCGTCGAATGCCAAGAAAACCGTCCAGTATCACCAGTTTTGGTG
CGCTCTGTCACCATTCACGCCAATCCCTTTGCAGATGGTTCGATTGCTTA
TGACGTGAAATGA
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