Gvermi6731.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6731.t1
Unique NameGvermi6731.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2112480..2113253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705742.1
Preferred nameRPS6
PFAMsRibosomal_S6e
Max annot lvl2759|Eukaryota
KEGG koko:K02991,ko:K07611,ko:K13022,ko:K14498,ko:K17284
KEGG Pathwayko01521,ko03010,ko03320,ko04016,ko04066,ko04075,ko04150,ko04151,ko04210,ko04214,ko04371,ko04714,ko04910,ko05205,map01521,map03010,map03320,map04016,map04066,map04075,map04150,map04151,map04210,map04214,map04371,map04714,map04910,map05205
KEGG ModuleM00177,M00179
GOsGO:0000003,GO:0000028,GO:0000075,GO:0000082,GO:0000184,GO:0000278,GO:0000281,GO:0000462,GO:0000910,GO:0000956,GO:0001775,GO:0001776,GO:0001890,GO:0002181,GO:0002252,GO:0002260,GO:0002262,GO:0002263,GO:0002285,GO:0002286,GO:0002309,GO:0002366,GO:0002376,GO:0002520,GO:0002521,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0005938,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006924,GO:0006955,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007369,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009892,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022605,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030217,GO:0030218,GO:0030425,GO:0030490,GO:0030587,GO:0030684,GO:0030686,GO:0031929,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032943,GO:0032991,GO:0033036,GO:0033077,GO:0033365,GO:0033500,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035556,GO:0035690,GO:0035770,GO:0036464,GO:0036477,GO:0042098,GO:0042110,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042592,GO:0042593,GO:0042788,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043029,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045047,GO:0045184,GO:0045321,GO:0045471,GO:0045786,GO:0045930,GO:0046483,GO:0046649,GO:0046651,GO:0046677,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048598,GO:0048608,GO:0048609,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060255,GO:0060548,GO:0061458,GO:0061515,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070227,GO:0070231,GO:0070661,GO:0070727,GO:0070887,GO:0070925,GO:0070938,GO:0070972,GO:0071236,GO:0071310,GO:0071361,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071887,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090702,GO:0097159,GO:0097237,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0099120,GO:0099568,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1901888,GO:1901889,GO:1903047,GO:1903347,GO:1990904,GO:2000810
Evalue1.08e-97
EggNOG OGsCOG2125@1|root,KOG1646@2759|Eukaryota
EC2.7.11.1
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko03011,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6731Gvermi6731Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2112480..2113253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6731.t1.stop1Gvermi6731.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2112480..2112482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6731.t1.CDS1Gvermi6731.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2112480..2113253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6731.t1.exon1Gvermi6731.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2112480..2113253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6731.t1.start1Gvermi6731.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2113251..2113253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6731.t1Gvermi6731.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2112480..2113253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6731.t1 ID=Gvermi6731.t1|Name=Gvermi6731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=258bp
MHDLYCLLLDNPKQFNLADPQTGAQKQIDIDDEKRLQHIYDMRLAQEING
EDLGDDYKGYIFRIMGGQDKQGFSMKQGVLTPNRVRLLMNQGVSGCRGYG
MRKGERKRKSVRGCVISHQIAVLNLLVVKNGDAPIAGLSDRNLPRRLGPK
RASKIRKLFNLTKNDDVRKYVIRREIPVKEGAKEGTKPKSKAPKIQRLVT
PLTIHRKRRRVALKLAAIKASKAAAAEYEKLLAQRNAEARESRKTSMSKR
RSTKAEH*
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spliced messenger RNA

>Gvermi6731.t1 ID=Gvermi6731.t1|Name=Gvermi6731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2112480..2113253- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGATTTGTACTGCTTGTTACTGGATAATCCAAAACAGTTTAATCT
TGCAGACCCTCAGACGGGTGCTCAGAAACAAATCGACATCGATGACGAGA
AGAGGCTTCAACATATCTACGACATGCGCCTCGCGCAGGAGATCAATGGC
GAGGATCTAGGTGATGACTACAAGGGCTACATTTTTAGGATTATGGGTGG
TCAGGACAAGCAAGGTTTCTCCATGAAGCAGGGTGTTCTGACCCCAAACC
GCGTGCGTCTTCTCATGAACCAGGGCGTGTCAGGATGTCGTGGCTACGGA
ATGCGAAAAGGTGAACGCAAGCGTAAGAGTGTTCGTGGATGTGTCATCTC
GCATCAGATCGCAGTGCTTAACCTTCTAGTCGTCAAGAACGGAGACGCGC
CGATCGCTGGCCTTTCAGACAGAAATCTTCCACGCCGTCTCGGTCCGAAG
CGTGCGTCTAAGATTCGCAAGCTATTCAATCTCACCAAAAATGATGATGT
GCGCAAGTATGTCATTCGCCGTGAGATTCCGGTTAAGGAGGGCGCCAAGG
AAGGTACAAAGCCGAAGTCCAAGGCTCCGAAAATTCAGAGACTTGTCACG
CCGCTCACTATTCACCGCAAGCGCCGGAGGGTTGCGCTTAAGCTGGCAGC
CATCAAGGCCTCTAAGGCTGCGGCCGCCGAATACGAGAAACTGCTGGCAC
AGCGAAACGCCGAAGCTCGAGAGAGCCGCAAGACTTCGATGTCTAAGAGA
CGCTCGACGAAGGCCGAGCATTAA
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protein sequence of Gvermi6731.t1

>Gvermi6731.t1 ID=Gvermi6731.t1|Name=Gvermi6731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=258bp
MHDLYCLLLDNPKQFNLADPQTGAQKQIDIDDEKRLQHIYDMRLAQEING
EDLGDDYKGYIFRIMGGQDKQGFSMKQGVLTPNRVRLLMNQGVSGCRGYG
MRKGERKRKSVRGCVISHQIAVLNLLVVKNGDAPIAGLSDRNLPRRLGPK
RASKIRKLFNLTKNDDVRKYVIRREIPVKEGAKEGTKPKSKAPKIQRLVT
PLTIHRKRRRVALKLAAIKASKAAAAEYEKLLAQRNAEARESRKTSMSKR
RSTKAEH*
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mRNA from alignment at ScGOVlb_88:2112480..2113253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6731.t1 ID=Gvermi6731.t1|Name=Gvermi6731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2112480..2113253- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACGATTTGTACTGCTTGTTACTGGATAATCCAAAACAGTTTAATCT
TGCAGACCCTCAGACGGGTGCTCAGAAACAAATCGACATCGATGACGAGA
AGAGGCTTCAACATATCTACGACATGCGCCTCGCGCAGGAGATCAATGGC
GAGGATCTAGGTGATGACTACAAGGGCTACATTTTTAGGATTATGGGTGG
TCAGGACAAGCAAGGTTTCTCCATGAAGCAGGGTGTTCTGACCCCAAACC
GCGTGCGTCTTCTCATGAACCAGGGCGTGTCAGGATGTCGTGGCTACGGA
ATGCGAAAAGGTGAACGCAAGCGTAAGAGTGTTCGTGGATGTGTCATCTC
GCATCAGATCGCAGTGCTTAACCTTCTAGTCGTCAAGAACGGAGACGCGC
CGATCGCTGGCCTTTCAGACAGAAATCTTCCACGCCGTCTCGGTCCGAAG
CGTGCGTCTAAGATTCGCAAGCTATTCAATCTCACCAAAAATGATGATGT
GCGCAAGTATGTCATTCGCCGTGAGATTCCGGTTAAGGAGGGCGCCAAGG
AAGGTACAAAGCCGAAGTCCAAGGCTCCGAAAATTCAGAGACTTGTCACG
CCGCTCACTATTCACCGCAAGCGCCGGAGGGTTGCGCTTAAGCTGGCAGC
CATCAAGGCCTCTAAGGCTGCGGCCGCCGAATACGAGAAACTGCTGGCAC
AGCGAAACGCCGAAGCTCGAGAGAGCCGCAAGACTTCGATGTCTAAGAGA
CGCTCGACGAAGGCCGAGCATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2112480..2113253-

>Gvermi6731.t1 ID=Gvermi6731.t1|Name=Gvermi6731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=774bp|location=Sequence derived from alignment at ScGOVlb_88:2112480..2113253- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACGATTTGTACTGCTTGTTACTGGATAATCCAAAACAGTTTAATCT
TGCAGACCCTCAGACGGGTGCTCAGAAACAAATCGACATCGATGACGAGA
AGAGGCTTCAACATATCTACGACATGCGCCTCGCGCAGGAGATCAATGGC
GAGGATCTAGGTGATGACTACAAGGGCTACATTTTTAGGATTATGGGTGG
TCAGGACAAGCAAGGTTTCTCCATGAAGCAGGGTGTTCTGACCCCAAACC
GCGTGCGTCTTCTCATGAACCAGGGCGTGTCAGGATGTCGTGGCTACGGA
ATGCGAAAAGGTGAACGCAAGCGTAAGAGTGTTCGTGGATGTGTCATCTC
GCATCAGATCGCAGTGCTTAACCTTCTAGTCGTCAAGAACGGAGACGCGC
CGATCGCTGGCCTTTCAGACAGAAATCTTCCACGCCGTCTCGGTCCGAAG
CGTGCGTCTAAGATTCGCAAGCTATTCAATCTCACCAAAAATGATGATGT
GCGCAAGTATGTCATTCGCCGTGAGATTCCGGTTAAGGAGGGCGCCAAGG
AAGGTACAAAGCCGAAGTCCAAGGCTCCGAAAATTCAGAGACTTGTCACG
CCGCTCACTATTCACCGCAAGCGCCGGAGGGTTGCGCTTAAGCTGGCAGC
CATCAAGGCCTCTAAGGCTGCGGCCGCCGAATACGAGAAACTGCTGGCAC
AGCGAAACGCCGAAGCTCGAGAGAGCCGCAAGACTTCGATGTCTAAGAGA
CGCTCGACGAAGGCCGAGCATTAA
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