Gvermi6734.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6734.t1
Unique Name	Gvermi6734.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	192

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2116480..2117055 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS047CT
PFAMs	Ribosomal_L21p
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02888
KEGG Pathway	ko03010,map03010
KEGG Module	M00178
GOs	GO:0000003,GO:0000313,GO:0000315,GO:0000741,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006950,GO:0006996,GO:0006997,GO:0007275,GO:0008150,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009553,GO:0009555,GO:0009559,GO:0009561,GO:0009566,GO:0009567,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010197,GO:0015934,GO:0016043,GO:0019953,GO:0022414,GO:0030154,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048229,GO:0048284,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051704,GO:0061024,GO:0061458,GO:0070013,GO:0071840,GO:0097159,GO:0098798,GO:1901363,GO:1990904
Evalue	4.71e-25
EggNOG OGs	COG0261@1\|root,KOG1686@2759\|Eukaryota
Description	structural constituent of ribosome
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6734	Gvermi6734	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2116480..2117055 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6734.t1.stop1	Gvermi6734.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2116480..2116482 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6734.t1.CDS1	Gvermi6734.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2116480..2117055 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6734.t1.exon1	Gvermi6734.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2116480..2117055 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6734.t1.start1	Gvermi6734.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2117053..2117055 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6734.t1	Gvermi6734.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2116480..2117055 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2116480..2117055-
coding sequence from alignment at ScGOVlb_88:2116480..2117055-

mRNA sequence

>Gvermi6734.t1 ID=Gvermi6734.t1|Name=Gvermi6734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=192bp
MERVPLPPGLSNDKFGLYEVLESSQHLRQVQGRNAVVAIHGPTEAWIPKG
IEQHGASGGMWAIIATSGTQYKVMKGDVLYTNRQVGEVNTQVAFDAVLAI
GVFDWTLFGRPAIRHAKVLATVEEQTKSAKVMVAKFKKRKGYRRRKGHRQ
PITRFRIDDIVYEWPDAEMIKPYKVPFYPNRPPLPNHMRPL*

spliced messenger RNA

>Gvermi6734.t1 ID=Gvermi6734.t1|Name=Gvermi6734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_88:2116480..2117055- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGAGTGCCACTTCCGCCGGGGCTCAGCAACGACAAATTTGGGCT
GTACGAGGTGTTGGAAAGCAGTCAGCATCTACGTCAGGTGCAAGGAAGAA
ATGCAGTTGTGGCGATTCACGGCCCGACCGAGGCATGGATCCCGAAGGGG
ATTGAGCAGCACGGAGCCAGCGGCGGCATGTGGGCGATAATCGCAACGTC
TGGCACGCAGTACAAAGTGATGAAGGGCGATGTGTTGTACACCAACAGGC
AGGTTGGCGAAGTCAACACCCAGGTGGCGTTTGATGCCGTTCTCGCTATT
GGCGTGTTTGACTGGACTTTGTTCGGAAGGCCTGCCATTCGGCATGCTAA
AGTATTGGCTACCGTCGAAGAGCAGACCAAAAGCGCCAAGGTGATGGTGG
CCAAATTCAAGAAGCGGAAAGGGTATCGGAGACGAAAGGGTCATCGACAG
CCGATCACTAGATTTAGGATCGACGACATTGTGTATGAATGGCCTGACGC
TGAAATGATCAAACCGTACAAGGTGCCGTTCTACCCGAACAGGCCTCCAC
TACCAAACCACATGCGTCCGCTGTGA

protein sequence of Gvermi6734.t1

>Gvermi6734.t1 ID=Gvermi6734.t1|Name=Gvermi6734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=192bp
MERVPLPPGLSNDKFGLYEVLESSQHLRQVQGRNAVVAIHGPTEAWIPKG
IEQHGASGGMWAIIATSGTQYKVMKGDVLYTNRQVGEVNTQVAFDAVLAI
GVFDWTLFGRPAIRHAKVLATVEEQTKSAKVMVAKFKKRKGYRRRKGHRQ
PITRFRIDDIVYEWPDAEMIKPYKVPFYPNRPPLPNHMRPL*

mRNA from alignment at ScGOVlb_88:2116480..2117055-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6734.t1 ID=Gvermi6734.t1|Name=Gvermi6734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp|location=Sequence derived from alignment at ScGOVlb_88:2116480..2117055- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGAGTGCCACTTCCGCCGGGGCTCAGCAACGACAAATTTGGGCT
GTACGAGGTGTTGGAAAGCAGTCAGCATCTACGTCAGGTGCAAGGAAGAA
ATGCAGTTGTGGCGATTCACGGCCCGACCGAGGCATGGATCCCGAAGGGG
ATTGAGCAGCACGGAGCCAGCGGCGGCATGTGGGCGATAATCGCAACGTC
TGGCACGCAGTACAAAGTGATGAAGGGCGATGTGTTGTACACCAACAGGC
AGGTTGGCGAAGTCAACACCCAGGTGGCGTTTGATGCCGTTCTCGCTATT
GGCGTGTTTGACTGGACTTTGTTCGGAAGGCCTGCCATTCGGCATGCTAA
AGTATTGGCTACCGTCGAAGAGCAGACCAAAAGCGCCAAGGTGATGGTGG
CCAAATTCAAGAAGCGGAAAGGGTATCGGAGACGAAAGGGTCATCGACAG
CCGATCACTAGATTTAGGATCGACGACATTGTGTATGAATGGCCTGACGC
TGAAATGATCAAACCGTACAAGGTGCCGTTCTACCCGAACAGGCCTCCAC
TACCAAACCACATGCGTCCGCTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2116480..2117055-

>Gvermi6734.t1 ID=Gvermi6734.t1|Name=Gvermi6734.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=576bp|location=Sequence derived from alignment at ScGOVlb_88:2116480..2117055- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAGAGTGCCACTTCCGCCGGGGCTCAGCAACGACAAATTTGGGCT
GTACGAGGTGTTGGAAAGCAGTCAGCATCTACGTCAGGTGCAAGGAAGAA
ATGCAGTTGTGGCGATTCACGGCCCGACCGAGGCATGGATCCCGAAGGGG
ATTGAGCAGCACGGAGCCAGCGGCGGCATGTGGGCGATAATCGCAACGTC
TGGCACGCAGTACAAAGTGATGAAGGGCGATGTGTTGTACACCAACAGGC
AGGTTGGCGAAGTCAACACCCAGGTGGCGTTTGATGCCGTTCTCGCTATT
GGCGTGTTTGACTGGACTTTGTTCGGAAGGCCTGCCATTCGGCATGCTAA
AGTATTGGCTACCGTCGAAGAGCAGACCAAAAGCGCCAAGGTGATGGTGG
CCAAATTCAAGAAGCGGAAAGGGTATCGGAGACGAAAGGGTCATCGACAG
CCGATCACTAGATTTAGGATCGACGACATTGTGTATGAATGGCCTGACGC
TGAAATGATCAAACCGTACAAGGTGCCGTTCTACCCGAACAGGCCTCCAC
TACCAAACCACATGCGTCCGCTGTGA