Gvermi6755.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6755.t1
Unique NameGvermi6755.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2163480..2164930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN301CT
Preferred namekes1
PFAMsOxysterol_BP
Max annot lvl2759|Eukaryota
KEGG koko:K05012,ko:K20465
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005933,GO:0005935,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006892,GO:0006897,GO:0006914,GO:0007163,GO:0008142,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009893,GO:0009987,GO:0010562,GO:0010876,GO:0010921,GO:0010922,GO:0012505,GO:0015248,GO:0015850,GO:0015918,GO:0016020,GO:0016043,GO:0016192,GO:0016237,GO:0019220,GO:0019222,GO:0019898,GO:0030011,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031984,GO:0032365,GO:0032934,GO:0032940,GO:0033036,GO:0034727,GO:0035091,GO:0035303,GO:0035306,GO:0035621,GO:0035627,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045937,GO:0046903,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0065007,GO:0065009,GO:0070273,GO:0070300,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0120009,GO:0120011,GO:1901564,GO:1901981,GO:1902936
Evalue1.29e-50
EggNOG OGsKOG2210@1|root,KOG2210@2759|Eukaryota
Descriptionlipid transport
COG categoryP
BRITEko00000,ko04040,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6755Gvermi6755Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2163480..2164930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6755.t1Gvermi6755.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2163480..2164930 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6755.t1.start1Gvermi6755.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2163480..2163482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6755.t1.CDS1Gvermi6755.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2163480..2164875 +
Gvermi6755.t1.CDS2Gvermi6755.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2164923..2164930 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6755.t1.exon1Gvermi6755.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2163480..2164875 +
Gvermi6755.t1.exon2Gvermi6755.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2164923..2164930 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6755.t1.intron1Gvermi6755.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2164876..2164922 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6755.t1.stop1Gvermi6755.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2164928..2164930 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6755.t1 ID=Gvermi6755.t1|Name=Gvermi6755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp
MSSSSTPQFKPLAKSDDYRIENASVAGGMLFEDPKEGEMLRKSVQYVLQR
VGSQVLQGNISFSGMAMPVHMNEPRSLLERITDDWAYAPLYLGAAAATAD
PLQRIKLVAAFVVSGLHCIDTLAKPFNPILGSTYQATLSDGTPCYVEQTS
HHPPVTHYTIRPHNNSYLLAGFSGVQGGVVWGLDTALSSRRIGINVVQFA
DGSRIVYTYPKMLLRALLSELKCEFSGPFSVMYEQHGLVFDFVVNPPQPM
RWSPFSVGKPSDYLDGVLYRLSSVRKEKGAVTFTGAFAKRMGAFFGDPDQ
AQQEALDNGYTAIELRSDAEVIKSVTSVTQARGGVAKGIQILSTAEGEVE
REILSVARGTFVGYLDIDGERWWDIRETPKGKVSAADMIHALASDCRHRE
DVLALKRALSEDDAETRNSITYEAQMLKENLENIQRHDRKLRKEGVLKKV
EQDTDEEDNEEDERGRE*
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spliced messenger RNA

>Gvermi6755.t1 ID=Gvermi6755.t1|Name=Gvermi6755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_88:2163480..2164930+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCTTCCTCCACTCCGCAGTTCAAACCGCTAGCAAAGTCCGATGA
CTACCGTATTGAAAACGCATCAGTCGCTGGCGGAATGCTTTTTGAAGATC
CGAAAGAGGGAGAAATGCTCCGCAAAAGCGTGCAATACGTGCTGCAGCGC
GTGGGGTCACAAGTGTTACAAGGGAACATCTCCTTTTCTGGAATGGCCAT
GCCGGTTCACATGAATGAGCCAAGAAGTCTTCTTGAGCGCATCACAGATG
ATTGGGCGTATGCGCCGCTCTACTTAGGCGCAGCCGCTGCCACCGCGGAC
CCATTGCAACGCATTAAGCTCGTCGCCGCGTTTGTTGTGTCGGGCTTGCA
TTGCATCGATACGCTGGCAAAGCCGTTCAACCCTATTCTTGGTAGTACGT
ACCAGGCAACGCTCAGTGACGGGACTCCGTGCTATGTCGAACAAACCAGT
CATCACCCGCCTGTCACACATTACACGATTCGTCCTCATAACAACAGCTA
TCTACTAGCAGGCTTTAGTGGCGTACAAGGGGGAGTCGTATGGGGCTTGG
ACACGGCGCTCTCATCTCGAAGAATCGGTATCAATGTGGTTCAGTTTGCT
GACGGCTCACGTATCGTTTACACTTATCCGAAAATGCTCTTGCGCGCACT
ATTGAGTGAACTCAAGTGCGAGTTCTCTGGACCGTTTTCGGTCATGTACG
AGCAACACGGGCTGGTTTTCGATTTTGTTGTGAACCCACCACAGCCAATG
CGATGGTCTCCGTTCAGTGTGGGAAAGCCCTCCGACTATTTAGACGGCGT
TCTTTACCGACTTTCCAGCGTGAGGAAGGAAAAAGGTGCCGTGACGTTTA
CTGGAGCGTTTGCAAAACGGATGGGCGCGTTCTTCGGCGACCCTGACCAG
GCGCAACAAGAAGCTCTTGACAATGGCTACACAGCCATCGAACTTCGAAG
TGACGCAGAGGTGATAAAATCTGTCACAAGTGTAACTCAGGCGCGAGGTG
GAGTGGCGAAAGGCATCCAAATTCTAAGCACAGCCGAGGGCGAGGTTGAG
CGAGAAATCTTGTCGGTCGCGCGCGGCACTTTTGTCGGATATCTGGATAT
TGACGGCGAACGCTGGTGGGATATTCGTGAAACCCCTAAAGGCAAGGTGA
GCGCCGCAGATATGATACACGCGCTTGCGAGCGACTGTCGACACAGAGAG
GATGTCCTCGCTTTAAAGCGTGCGCTCAGTGAAGATGATGCGGAAACGAG
AAATTCGATTACATATGAGGCGCAGATGCTGAAAGAGAATCTGGAAAATA
TTCAACGCCACGACCGAAAATTACGAAAGGAGGGCGTTTTGAAGAAGGTT
GAGCAGGATACTGACGAAGAAGATAATGAGGAGGACGAAAGGGGGAGAGA
ATAA
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protein sequence of Gvermi6755.t1

>Gvermi6755.t1 ID=Gvermi6755.t1|Name=Gvermi6755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=468bp
MSSSSTPQFKPLAKSDDYRIENASVAGGMLFEDPKEGEMLRKSVQYVLQR
VGSQVLQGNISFSGMAMPVHMNEPRSLLERITDDWAYAPLYLGAAAATAD
PLQRIKLVAAFVVSGLHCIDTLAKPFNPILGSTYQATLSDGTPCYVEQTS
HHPPVTHYTIRPHNNSYLLAGFSGVQGGVVWGLDTALSSRRIGINVVQFA
DGSRIVYTYPKMLLRALLSELKCEFSGPFSVMYEQHGLVFDFVVNPPQPM
RWSPFSVGKPSDYLDGVLYRLSSVRKEKGAVTFTGAFAKRMGAFFGDPDQ
AQQEALDNGYTAIELRSDAEVIKSVTSVTQARGGVAKGIQILSTAEGEVE
REILSVARGTFVGYLDIDGERWWDIRETPKGKVSAADMIHALASDCRHRE
DVLALKRALSEDDAETRNSITYEAQMLKENLENIQRHDRKLRKEGVLKKV
EQDTDEEDNEEDERGRE*
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mRNA from alignment at ScGOVlb_88:2163480..2164930+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6755.t1 ID=Gvermi6755.t1|Name=Gvermi6755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1451bp|location=Sequence derived from alignment at ScGOVlb_88:2163480..2164930+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATCTTCCTCCACTCCGCAGTTCAAACCGCTAGCAAAGTCCGATGA
CTACCGTATTGAAAACGCATCAGTCGCTGGCGGAATGCTTTTTGAAGATC
CGAAAGAGGGAGAAATGCTCCGCAAAAGCGTGCAATACGTGCTGCAGCGC
GTGGGGTCACAAGTGTTACAAGGGAACATCTCCTTTTCTGGAATGGCCAT
GCCGGTTCACATGAATGAGCCAAGAAGTCTTCTTGAGCGCATCACAGATG
ATTGGGCGTATGCGCCGCTCTACTTAGGCGCAGCCGCTGCCACCGCGGAC
CCATTGCAACGCATTAAGCTCGTCGCCGCGTTTGTTGTGTCGGGCTTGCA
TTGCATCGATACGCTGGCAAAGCCGTTCAACCCTATTCTTGGTAGTACGT
ACCAGGCAACGCTCAGTGACGGGACTCCGTGCTATGTCGAACAAACCAGT
CATCACCCGCCTGTCACACATTACACGATTCGTCCTCATAACAACAGCTA
TCTACTAGCAGGCTTTAGTGGCGTACAAGGGGGAGTCGTATGGGGCTTGG
ACACGGCGCTCTCATCTCGAAGAATCGGTATCAATGTGGTTCAGTTTGCT
GACGGCTCACGTATCGTTTACACTTATCCGAAAATGCTCTTGCGCGCACT
ATTGAGTGAACTCAAGTGCGAGTTCTCTGGACCGTTTTCGGTCATGTACG
AGCAACACGGGCTGGTTTTCGATTTTGTTGTGAACCCACCACAGCCAATG
CGATGGTCTCCGTTCAGTGTGGGAAAGCCCTCCGACTATTTAGACGGCGT
TCTTTACCGACTTTCCAGCGTGAGGAAGGAAAAAGGTGCCGTGACGTTTA
CTGGAGCGTTTGCAAAACGGATGGGCGCGTTCTTCGGCGACCCTGACCAG
GCGCAACAAGAAGCTCTTGACAATGGCTACACAGCCATCGAACTTCGAAG
TGACGCAGAGGTGATAAAATCTGTCACAAGTGTAACTCAGGCGCGAGGTG
GAGTGGCGAAAGGCATCCAAATTCTAAGCACAGCCGAGGGCGAGGTTGAG
CGAGAAATCTTGTCGGTCGCGCGCGGCACTTTTGTCGGATATCTGGATAT
TGACGGCGAACGCTGGTGGGATATTCGTGAAACCCCTAAAGGCAAGGTGA
GCGCCGCAGATATGATACACGCGCTTGCGAGCGACTGTCGACACAGAGAG
GATGTCCTCGCTTTAAAGCGTGCGCTCAGTGAAGATGATGCGGAAACGAG
AAATTCGATTACATATGAGGCGCAGATGCTGAAAGAGAATCTGGAAAATA
TTCAACGCCACGACCGAAAATTACGAAAGGAGGGCGTTTTGAAGAAGGTT
GAGCAGGATACTGACGAAGAAGATAATGAGGAGGACGAAAGGGGGAGTGA
GTATGGTGATGTTGACGGGAAGGTACATGAAAATGAAAATGAGGAGAATA
A
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Coding sequence (CDS) from alignment at ScGOVlb_88:2163480..2164930+

>Gvermi6755.t1 ID=Gvermi6755.t1|Name=Gvermi6755.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1404bp|location=Sequence derived from alignment at ScGOVlb_88:2163480..2164930+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATCTTCCTCCACTCCGCAGTTCAAACCGCTAGCAAAGTCCGATGA
CTACCGTATTGAAAACGCATCAGTCGCTGGCGGAATGCTTTTTGAAGATC
CGAAAGAGGGAGAAATGCTCCGCAAAAGCGTGCAATACGTGCTGCAGCGC
GTGGGGTCACAAGTGTTACAAGGGAACATCTCCTTTTCTGGAATGGCCAT
GCCGGTTCACATGAATGAGCCAAGAAGTCTTCTTGAGCGCATCACAGATG
ATTGGGCGTATGCGCCGCTCTACTTAGGCGCAGCCGCTGCCACCGCGGAC
CCATTGCAACGCATTAAGCTCGTCGCCGCGTTTGTTGTGTCGGGCTTGCA
TTGCATCGATACGCTGGCAAAGCCGTTCAACCCTATTCTTGGTAGTACGT
ACCAGGCAACGCTCAGTGACGGGACTCCGTGCTATGTCGAACAAACCAGT
CATCACCCGCCTGTCACACATTACACGATTCGTCCTCATAACAACAGCTA
TCTACTAGCAGGCTTTAGTGGCGTACAAGGGGGAGTCGTATGGGGCTTGG
ACACGGCGCTCTCATCTCGAAGAATCGGTATCAATGTGGTTCAGTTTGCT
GACGGCTCACGTATCGTTTACACTTATCCGAAAATGCTCTTGCGCGCACT
ATTGAGTGAACTCAAGTGCGAGTTCTCTGGACCGTTTTCGGTCATGTACG
AGCAACACGGGCTGGTTTTCGATTTTGTTGTGAACCCACCACAGCCAATG
CGATGGTCTCCGTTCAGTGTGGGAAAGCCCTCCGACTATTTAGACGGCGT
TCTTTACCGACTTTCCAGCGTGAGGAAGGAAAAAGGTGCCGTGACGTTTA
CTGGAGCGTTTGCAAAACGGATGGGCGCGTTCTTCGGCGACCCTGACCAG
GCGCAACAAGAAGCTCTTGACAATGGCTACACAGCCATCGAACTTCGAAG
TGACGCAGAGGTGATAAAATCTGTCACAAGTGTAACTCAGGCGCGAGGTG
GAGTGGCGAAAGGCATCCAAATTCTAAGCACAGCCGAGGGCGAGGTTGAG
CGAGAAATCTTGTCGGTCGCGCGCGGCACTTTTGTCGGATATCTGGATAT
TGACGGCGAACGCTGGTGGGATATTCGTGAAACCCCTAAAGGCAAGGTGA
GCGCCGCAGATATGATACACGCGCTTGCGAGCGACTGTCGACACAGAGAG
GATGTCCTCGCTTTAAAGCGTGCGCTCAGTGAAGATGATGCGGAAACGAG
AAATTCGATTACATATGAGGCGCAGATGCTGAAAGAGAATCTGGAAAATA
TTCAACGCCACGACCGAAAATTACGAAAGGAGGGCGTTTTGAAGAAGGTT
GAGCAGGATACTGACGAAGAAGATAATGAGGAGGACGAAAGGGGGAGAGA
ATAA
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