Gvermi1973.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1973.t1
Unique Name	Gvermi1973.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	522

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1622	contig	ScGOVlb_1622:2582020..2583585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81824.XP_001742465.1
Preferred name	MNS1
PFAMs	Glyco_hydro_47
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K01230
KEGG Reaction	R05982,R06722
KEGG Pathway	ko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG Module	M00073,M00074
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031984,GO:0033554,GO:0034976,GO:0035977,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:0097466,GO:0098588,GO:0098791,GO:0098827,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904587
Evalue	1.25e-78
EggNOG OGs	KOG2431@1\|root,KOG2431@2759\|Eukaryota,38CSI@33154\|Opisthokonta
EC	3.2.1.113
Description	Belongs to the glycosyl hydrolase 47 family
COG category	G
CAZy	GH47
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1973	Gvermi1973	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1622 2582020..2583585 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1973.t1.start1	Gvermi1973.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1622 2582020..2582022 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1973.t1.CDS1	Gvermi1973.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1622 2582020..2583585 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1973.t1.exon1	Gvermi1973.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1622 2582020..2583585 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1973.t1.stop1	Gvermi1973.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1622 2583583..2583585 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1973.t1	Gvermi1973.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1622 2582020..2583585 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1622:2582020..2583585+
coding sequence from alignment at ScGOVlb_1622:2582020..2583585+

mRNA sequence

>Gvermi1973.t1 ID=Gvermi1973.t1|Name=Gvermi1973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp
MRRNSPLTALILLTALASILLTCLVARVALNVSAISTPTLPPLIAQSADP
LFALLREDVKNVTRVLYTTYMHSCMGEDEFEPATGRCNQWFNIGLSALDS
LDTLLIMGLDDEYRASRDWAASSLRFDQVSSTVSLFEIVIRAIGGMNSAY
ELTGDSLWLNKTTELADMLLYAFESTRSKCPPSEVFIGNNIRERMLENPL
PTFSSASEVGTLQLEFRTLSYLSKNPKYKNAVDHCMKIITDAYPKNSLVP
PLFDVSKGVFHGDRLTIGGSVDSLYEMLVKNWVMSGRRDPTLRSLFERSV
LAIMRTLSRNNGHHLYIGEMKRDRPSSFRNHMDHLACFFPATLAYAALHG
LGGGLNGTGKRDYLPIARELTKSCFDMTRGVENGLAGEITVFVDTPVPKS
GQDVSYLRPEIVEALYYMDEIDPLAGDTYKRMGHEMWKSIRRSAQIPGRE
DGLLSTTYGLLDRSGELSHSGKLHSFVLAETMKYFYLLFDERSEGAARLP
LTEWVFNTEAHPVRIRGGEQK*

spliced messenger RNA

>Gvermi1973.t1 ID=Gvermi1973.t1|Name=Gvermi1973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_1622:2582020..2583585+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACGAAATTCGCCTCTCACTGCTCTAATTCTCTTAACTGCGCTCGC
CTCGATACTGCTTACCTGTCTGGTCGCGCGTGTCGCGCTGAATGTTTCGG
CGATCTCCACGCCAACTCTACCTCCCCTTATCGCGCAATCAGCGGATCCT
TTATTCGCGTTGTTACGCGAAGATGTGAAGAATGTGACGCGCGTTCTGTA
CACGACATATATGCACTCTTGCATGGGCGAAGATGAATTTGAGCCTGCGA
CAGGGCGATGTAATCAATGGTTCAACATAGGACTTAGTGCGTTGGATAGT
CTGGATACTTTGTTGATTATGGGGCTGGACGATGAGTACCGAGCGTCGCG
TGATTGGGCAGCTTCTTCGCTTCGGTTTGATCAGGTTTCAAGCACTGTTT
CGCTGTTTGAAATTGTAATACGCGCCATAGGCGGAATGAACTCTGCGTAC
GAACTCACGGGCGATTCTCTTTGGTTGAACAAGACCACTGAATTGGCAGA
CATGCTCCTGTACGCGTTTGAAAGCACTCGATCAAAGTGTCCACCATCTG
AGGTGTTCATCGGCAATAACATCAGAGAAAGGATGCTCGAAAATCCGTTG
CCAACGTTTTCGTCCGCATCAGAGGTTGGGACGCTTCAGCTGGAGTTCCG
CACACTTTCATACCTGTCAAAAAATCCAAAGTACAAGAACGCTGTCGATC
ACTGCATGAAAATCATAACAGACGCTTACCCGAAAAACAGTCTAGTACCA
CCCTTGTTTGATGTGTCCAAAGGTGTGTTCCACGGCGACCGTCTCACGAT
CGGAGGCTCTGTTGACTCATTGTACGAAATGTTAGTGAAGAACTGGGTCA
TGTCCGGCCGGCGTGACCCAACTCTTCGCTCATTATTTGAGCGATCCGTG
CTGGCGATCATGCGTACGTTGAGTCGAAACAATGGGCACCACTTGTACAT
CGGTGAGATGAAACGTGATCGCCCGTCAAGTTTCCGCAATCACATGGATC
ATCTAGCGTGCTTCTTTCCTGCAACGCTGGCGTACGCCGCGTTGCACGGA
CTGGGCGGCGGGCTGAATGGTACCGGGAAACGCGATTACCTTCCGATTGC
GCGCGAGCTGACGAAGAGCTGTTTCGATATGACGCGCGGTGTGGAAAACG
GGCTGGCGGGCGAAATAACCGTGTTCGTCGATACGCCGGTTCCAAAGAGT
GGACAAGACGTGAGCTATCTGCGGCCGGAAATTGTGGAGGCACTGTATTA
TATGGATGAGATCGATCCATTGGCGGGTGACACGTACAAGCGAATGGGAC
ATGAAATGTGGAAGAGTATCAGACGCTCGGCGCAGATTCCCGGGCGAGAG
GATGGACTGCTGTCGACGACGTACGGGCTTCTCGATAGGAGCGGGGAATT
GAGTCACAGTGGAAAGCTACACTCATTTGTTTTGGCGGAGACGATGAAGT
ATTTTTACCTGCTGTTTGACGAACGGTCGGAAGGGGCGGCGAGGCTGCCA
CTGACTGAGTGGGTGTTCAACACAGAGGCACATCCAGTGCGAATCCGAGG
CGGCGAGCAGAAATAG

protein sequence of Gvermi1973.t1

>Gvermi1973.t1 ID=Gvermi1973.t1|Name=Gvermi1973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=522bp
MRRNSPLTALILLTALASILLTCLVARVALNVSAISTPTLPPLIAQSADP
LFALLREDVKNVTRVLYTTYMHSCMGEDEFEPATGRCNQWFNIGLSALDS
LDTLLIMGLDDEYRASRDWAASSLRFDQVSSTVSLFEIVIRAIGGMNSAY
ELTGDSLWLNKTTELADMLLYAFESTRSKCPPSEVFIGNNIRERMLENPL
PTFSSASEVGTLQLEFRTLSYLSKNPKYKNAVDHCMKIITDAYPKNSLVP
PLFDVSKGVFHGDRLTIGGSVDSLYEMLVKNWVMSGRRDPTLRSLFERSV
LAIMRTLSRNNGHHLYIGEMKRDRPSSFRNHMDHLACFFPATLAYAALHG
LGGGLNGTGKRDYLPIARELTKSCFDMTRGVENGLAGEITVFVDTPVPKS
GQDVSYLRPEIVEALYYMDEIDPLAGDTYKRMGHEMWKSIRRSAQIPGRE
DGLLSTTYGLLDRSGELSHSGKLHSFVLAETMKYFYLLFDERSEGAARLP
LTEWVFNTEAHPVRIRGGEQK*

mRNA from alignment at ScGOVlb_1622:2582020..2583585+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1973.t1 ID=Gvermi1973.t1|Name=Gvermi1973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_1622:2582020..2583585+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACGAAATTCGCCTCTCACTGCTCTAATTCTCTTAACTGCGCTCGC
CTCGATACTGCTTACCTGTCTGGTCGCGCGTGTCGCGCTGAATGTTTCGG
CGATCTCCACGCCAACTCTACCTCCCCTTATCGCGCAATCAGCGGATCCT
TTATTCGCGTTGTTACGCGAAGATGTGAAGAATGTGACGCGCGTTCTGTA
CACGACATATATGCACTCTTGCATGGGCGAAGATGAATTTGAGCCTGCGA
CAGGGCGATGTAATCAATGGTTCAACATAGGACTTAGTGCGTTGGATAGT
CTGGATACTTTGTTGATTATGGGGCTGGACGATGAGTACCGAGCGTCGCG
TGATTGGGCAGCTTCTTCGCTTCGGTTTGATCAGGTTTCAAGCACTGTTT
CGCTGTTTGAAATTGTAATACGCGCCATAGGCGGAATGAACTCTGCGTAC
GAACTCACGGGCGATTCTCTTTGGTTGAACAAGACCACTGAATTGGCAGA
CATGCTCCTGTACGCGTTTGAAAGCACTCGATCAAAGTGTCCACCATCTG
AGGTGTTCATCGGCAATAACATCAGAGAAAGGATGCTCGAAAATCCGTTG
CCAACGTTTTCGTCCGCATCAGAGGTTGGGACGCTTCAGCTGGAGTTCCG
CACACTTTCATACCTGTCAAAAAATCCAAAGTACAAGAACGCTGTCGATC
ACTGCATGAAAATCATAACAGACGCTTACCCGAAAAACAGTCTAGTACCA
CCCTTGTTTGATGTGTCCAAAGGTGTGTTCCACGGCGACCGTCTCACGAT
CGGAGGCTCTGTTGACTCATTGTACGAAATGTTAGTGAAGAACTGGGTCA
TGTCCGGCCGGCGTGACCCAACTCTTCGCTCATTATTTGAGCGATCCGTG
CTGGCGATCATGCGTACGTTGAGTCGAAACAATGGGCACCACTTGTACAT
CGGTGAGATGAAACGTGATCGCCCGTCAAGTTTCCGCAATCACATGGATC
ATCTAGCGTGCTTCTTTCCTGCAACGCTGGCGTACGCCGCGTTGCACGGA
CTGGGCGGCGGGCTGAATGGTACCGGGAAACGCGATTACCTTCCGATTGC
GCGCGAGCTGACGAAGAGCTGTTTCGATATGACGCGCGGTGTGGAAAACG
GGCTGGCGGGCGAAATAACCGTGTTCGTCGATACGCCGGTTCCAAAGAGT
GGACAAGACGTGAGCTATCTGCGGCCGGAAATTGTGGAGGCACTGTATTA
TATGGATGAGATCGATCCATTGGCGGGTGACACGTACAAGCGAATGGGAC
ATGAAATGTGGAAGAGTATCAGACGCTCGGCGCAGATTCCCGGGCGAGAG
GATGGACTGCTGTCGACGACGTACGGGCTTCTCGATAGGAGCGGGGAATT
GAGTCACAGTGGAAAGCTACACTCATTTGTTTTGGCGGAGACGATGAAGT
ATTTTTACCTGCTGTTTGACGAACGGTCGGAAGGGGCGGCGAGGCTGCCA
CTGACTGAGTGGGTGTTCAACACAGAGGCACATCCAGTGCGAATCCGAGG
CGGCGAGCAGAAATAG

Coding sequence (CDS) from alignment at ScGOVlb_1622:2582020..2583585+

>Gvermi1973.t1 ID=Gvermi1973.t1|Name=Gvermi1973.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1566bp|location=Sequence derived from alignment at ScGOVlb_1622:2582020..2583585+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGACGAAATTCGCCTCTCACTGCTCTAATTCTCTTAACTGCGCTCGC
CTCGATACTGCTTACCTGTCTGGTCGCGCGTGTCGCGCTGAATGTTTCGG
CGATCTCCACGCCAACTCTACCTCCCCTTATCGCGCAATCAGCGGATCCT
TTATTCGCGTTGTTACGCGAAGATGTGAAGAATGTGACGCGCGTTCTGTA
CACGACATATATGCACTCTTGCATGGGCGAAGATGAATTTGAGCCTGCGA
CAGGGCGATGTAATCAATGGTTCAACATAGGACTTAGTGCGTTGGATAGT
CTGGATACTTTGTTGATTATGGGGCTGGACGATGAGTACCGAGCGTCGCG
TGATTGGGCAGCTTCTTCGCTTCGGTTTGATCAGGTTTCAAGCACTGTTT
CGCTGTTTGAAATTGTAATACGCGCCATAGGCGGAATGAACTCTGCGTAC
GAACTCACGGGCGATTCTCTTTGGTTGAACAAGACCACTGAATTGGCAGA
CATGCTCCTGTACGCGTTTGAAAGCACTCGATCAAAGTGTCCACCATCTG
AGGTGTTCATCGGCAATAACATCAGAGAAAGGATGCTCGAAAATCCGTTG
CCAACGTTTTCGTCCGCATCAGAGGTTGGGACGCTTCAGCTGGAGTTCCG
CACACTTTCATACCTGTCAAAAAATCCAAAGTACAAGAACGCTGTCGATC
ACTGCATGAAAATCATAACAGACGCTTACCCGAAAAACAGTCTAGTACCA
CCCTTGTTTGATGTGTCCAAAGGTGTGTTCCACGGCGACCGTCTCACGAT
CGGAGGCTCTGTTGACTCATTGTACGAAATGTTAGTGAAGAACTGGGTCA
TGTCCGGCCGGCGTGACCCAACTCTTCGCTCATTATTTGAGCGATCCGTG
CTGGCGATCATGCGTACGTTGAGTCGAAACAATGGGCACCACTTGTACAT
CGGTGAGATGAAACGTGATCGCCCGTCAAGTTTCCGCAATCACATGGATC
ATCTAGCGTGCTTCTTTCCTGCAACGCTGGCGTACGCCGCGTTGCACGGA
CTGGGCGGCGGGCTGAATGGTACCGGGAAACGCGATTACCTTCCGATTGC
GCGCGAGCTGACGAAGAGCTGTTTCGATATGACGCGCGGTGTGGAAAACG
GGCTGGCGGGCGAAATAACCGTGTTCGTCGATACGCCGGTTCCAAAGAGT
GGACAAGACGTGAGCTATCTGCGGCCGGAAATTGTGGAGGCACTGTATTA
TATGGATGAGATCGATCCATTGGCGGGTGACACGTACAAGCGAATGGGAC
ATGAAATGTGGAAGAGTATCAGACGCTCGGCGCAGATTCCCGGGCGAGAG
GATGGACTGCTGTCGACGACGTACGGGCTTCTCGATAGGAGCGGGGAATT
GAGTCACAGTGGAAAGCTACACTCATTTGTTTTGGCGGAGACGATGAAGT
ATTTTTACCTGCTGTTTGACGAACGGTCGGAAGGGGCGGCGAGGCTGCCA
CTGACTGAGTGGGTGTTCAACACAGAGGCACATCCAGTGCGAATCCGAGG
CGGCGAGCAGAAATAG