Gvermi6703.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6703.t1
Unique NameGvermi6703.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1994312..1995148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog181119.XP_005525934.1
Preferred nameWBSCR22
PFAMsMethyltransf_11,Methyltransf_25,WBS_methylT
Max annot lvl33208|Metazoa
KEGG koko:K19306
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:2000232,GO:2000234
Evalue2.97e-96
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,38E9S@33154|Opisthokonta,3BBY9@33208|Metazoa,3CSCU@33213|Bilateria,48BJB@7711|Chordata,493H8@7742|Vertebrata,4GPQS@8782|Aves
EC2.1.1.309
Descriptionsyndrome chromosome region 22
COG categoryQ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6703Gvermi6703Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1994312..1995148 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6703.t1.stop1Gvermi6703.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1994312..1994314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6703.t1.CDS1Gvermi6703.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1994312..1995148 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6703.t1.exon1Gvermi6703.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1994312..1995148 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6703.t1.start1Gvermi6703.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1995146..1995148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6703.t1Gvermi6703.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1994312..1995148 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6703.t1 ID=Gvermi6703.t1|Name=Gvermi6703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=279bp
MSRRPEHTAPADEFYSAKGAAKYAASSRINAVQNALAQRCLELLALPPAH
PALLLDVGTGTGLSGQVLTRAGHHWVGTDVSQPMLDTALENDVQGDLMLA
DAGHGVAFRMGCFDGAISVSAVQWLCNADRSDHNPHKRINRFFSSLYAAL
RRGARAVLQFYPENVAQIELLVASAMRAGFSGGLLVDYPNSAKAKKYYLC
LTAGPPEKGAVQPTPLGVAPSHTVSVGNRKSHNKNNNTSDHSVTRKDWII
SKKERRRRQGHMVRPNSKYTGRKRRVQF*
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spliced messenger RNA

>Gvermi6703.t1 ID=Gvermi6703.t1|Name=Gvermi6703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=837bp|location=Sequence derived from alignment at ScGOVlb_88:1994312..1995148- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCGCCCCGAGCATACGGCGCCGGCCGACGAGTTCTACTCCGC
CAAGGGTGCCGCCAAGTACGCGGCCAGCTCGCGCATCAACGCCGTGCAGA
ACGCGCTCGCGCAGCGCTGCCTCGAGCTGCTCGCGCTGCCGCCCGCCCAC
CCCGCGCTGCTGCTCGACGTCGGCACCGGCACCGGCCTCTCAGGCCAGGT
GCTCACGCGCGCCGGCCACCACTGGGTCGGCACCGACGTCTCGCAGCCCA
TGCTCGACACAGCGCTCGAAAACGACGTGCAGGGCGACCTCATGCTGGCC
GACGCCGGCCACGGCGTCGCCTTCCGCATGGGCTGCTTCGACGGCGCCAT
CTCCGTCTCCGCTGTGCAATGGCTCTGCAACGCCGACCGCTCGGATCACA
ACCCCCACAAGCGCATCAACCGTTTTTTTTCCTCGCTCTACGCCGCCCTG
CGCCGCGGCGCCCGGGCTGTGCTGCAGTTCTACCCGGAGAACGTCGCCCA
GATTGAGCTGCTCGTCGCCTCCGCCATGCGCGCCGGCTTCAGCGGCGGCT
TGCTGGTCGACTACCCCAACAGCGCCAAGGCCAAAAAGTACTACCTCTGC
TTGACCGCAGGCCCTCCGGAGAAAGGTGCCGTGCAGCCGACGCCGCTCGG
CGTAGCACCCAGTCACACCGTCTCTGTGGGCAATCGCAAGTCACACAACA
AGAATAACAACACGTCTGACCACTCTGTCACCAGGAAGGATTGGATCATA
TCAAAGAAAGAACGAAGGCGTCGCCAGGGGCACATGGTACGACCAAACTC
TAAGTACACCGGCAGGAAACGCAGAGTTCAGTTTTGA
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protein sequence of Gvermi6703.t1

>Gvermi6703.t1 ID=Gvermi6703.t1|Name=Gvermi6703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=279bp
MSRRPEHTAPADEFYSAKGAAKYAASSRINAVQNALAQRCLELLALPPAH
PALLLDVGTGTGLSGQVLTRAGHHWVGTDVSQPMLDTALENDVQGDLMLA
DAGHGVAFRMGCFDGAISVSAVQWLCNADRSDHNPHKRINRFFSSLYAAL
RRGARAVLQFYPENVAQIELLVASAMRAGFSGGLLVDYPNSAKAKKYYLC
LTAGPPEKGAVQPTPLGVAPSHTVSVGNRKSHNKNNNTSDHSVTRKDWII
SKKERRRRQGHMVRPNSKYTGRKRRVQF*
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mRNA from alignment at ScGOVlb_88:1994312..1995148-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6703.t1 ID=Gvermi6703.t1|Name=Gvermi6703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=837bp|location=Sequence derived from alignment at ScGOVlb_88:1994312..1995148- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCCGCCCCGAGCATACGGCGCCGGCCGACGAGTTCTACTCCGC
CAAGGGTGCCGCCAAGTACGCGGCCAGCTCGCGCATCAACGCCGTGCAGA
ACGCGCTCGCGCAGCGCTGCCTCGAGCTGCTCGCGCTGCCGCCCGCCCAC
CCCGCGCTGCTGCTCGACGTCGGCACCGGCACCGGCCTCTCAGGCCAGGT
GCTCACGCGCGCCGGCCACCACTGGGTCGGCACCGACGTCTCGCAGCCCA
TGCTCGACACAGCGCTCGAAAACGACGTGCAGGGCGACCTCATGCTGGCC
GACGCCGGCCACGGCGTCGCCTTCCGCATGGGCTGCTTCGACGGCGCCAT
CTCCGTCTCCGCTGTGCAATGGCTCTGCAACGCCGACCGCTCGGATCACA
ACCCCCACAAGCGCATCAACCGTTTTTTTTCCTCGCTCTACGCCGCCCTG
CGCCGCGGCGCCCGGGCTGTGCTGCAGTTCTACCCGGAGAACGTCGCCCA
GATTGAGCTGCTCGTCGCCTCCGCCATGCGCGCCGGCTTCAGCGGCGGCT
TGCTGGTCGACTACCCCAACAGCGCCAAGGCCAAAAAGTACTACCTCTGC
TTGACCGCAGGCCCTCCGGAGAAAGGTGCCGTGCAGCCGACGCCGCTCGG
CGTAGCACCCAGTCACACCGTCTCTGTGGGCAATCGCAAGTCACACAACA
AGAATAACAACACGTCTGACCACTCTGTCACCAGGAAGGATTGGATCATA
TCAAAGAAAGAACGAAGGCGTCGCCAGGGGCACATGGTACGACCAAACTC
TAAGTACACCGGCAGGAAACGCAGAGTTCAGTTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1994312..1995148-

>Gvermi6703.t1 ID=Gvermi6703.t1|Name=Gvermi6703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=837bp|location=Sequence derived from alignment at ScGOVlb_88:1994312..1995148- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCGCCGCCCCGAGCATACGGCGCCGGCCGACGAGTTCTACTCCGC
CAAGGGTGCCGCCAAGTACGCGGCCAGCTCGCGCATCAACGCCGTGCAGA
ACGCGCTCGCGCAGCGCTGCCTCGAGCTGCTCGCGCTGCCGCCCGCCCAC
CCCGCGCTGCTGCTCGACGTCGGCACCGGCACCGGCCTCTCAGGCCAGGT
GCTCACGCGCGCCGGCCACCACTGGGTCGGCACCGACGTCTCGCAGCCCA
TGCTCGACACAGCGCTCGAAAACGACGTGCAGGGCGACCTCATGCTGGCC
GACGCCGGCCACGGCGTCGCCTTCCGCATGGGCTGCTTCGACGGCGCCAT
CTCCGTCTCCGCTGTGCAATGGCTCTGCAACGCCGACCGCTCGGATCACA
ACCCCCACAAGCGCATCAACCGTTTTTTTTCCTCGCTCTACGCCGCCCTG
CGCCGCGGCGCCCGGGCTGTGCTGCAGTTCTACCCGGAGAACGTCGCCCA
GATTGAGCTGCTCGTCGCCTCCGCCATGCGCGCCGGCTTCAGCGGCGGCT
TGCTGGTCGACTACCCCAACAGCGCCAAGGCCAAAAAGTACTACCTCTGC
TTGACCGCAGGCCCTCCGGAGAAAGGTGCCGTGCAGCCGACGCCGCTCGG
CGTAGCACCCAGTCACACCGTCTCTGTGGGCAATCGCAAGTCACACAACA
AGAATAACAACACGTCTGACCACTCTGTCACCAGGAAGGATTGGATCATA
TCAAAGAAAGAACGAAGGCGTCGCCAGGGGCACATGGTACGACCAAACTC
TAAGTACACCGGCAGGAAACGCAGAGTTCAGTTTTGA
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