Gvermi6707.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6707.t1
Unique Name	Gvermi6707.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	408

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2002181..2003404 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704927.1
PFAMs	Aldo_ket_red
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09338
Evalue	2.28e-118
EggNOG OGs	COG0667@1\|root,KOG1575@2759\|Eukaryota
Description	oxidoreductase activity
COG category	C
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6707	Gvermi6707	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2002181..2003404 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6707.t1.start1	Gvermi6707.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2002181..2002183 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6707.t1.CDS1	Gvermi6707.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2002181..2003404 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6707.t1.exon1	Gvermi6707.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2002181..2003404 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6707.t1.stop1	Gvermi6707.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2003402..2003404 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6707.t1	Gvermi6707.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2002181..2003404 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2002181..2003404+
coding sequence from alignment at ScGOVlb_88:2002181..2003404+

mRNA sequence

>Gvermi6707.t1 ID=Gvermi6707.t1|Name=Gvermi6707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=408bp
MCSSVAFATSSIFGLRKHVPHPASSVVSPSCTRKPLRMVAETKAPRTDYK
LNLRPVGTAGLVMTEVTLGTMTWGQQNSEQDAHDQLDYAFERGVVGIDGA
ELYPVPARQETYGDTERVIGSWIKKRGGTSFREKLVIFSKLAGGNIGGRA
MPWIRGDGRRVDRKNIRLAVEGILKRLGTDYIDLLQIHWPDRYVPMFGAG
AYDIAKEVDSVPFEQQVAAMDELIKEGLIRNYGLSNETAWGVSQFDSIAR
TKGYARPVSIQNSYSLIYRDFEGHLAEVCAKGNANVGLLAYSPLAGGALS
GKYLDPPLPENSRFALYPGYMQRFQSSLAAEAIREYKRVADEANMTLTEL
SLAWCKSRWFVASTIIGATSIKQLKQNLDAFSVELDPTVIEAVERVYKRY
RDPSKTS*

spliced messenger RNA

>Gvermi6707.t1 ID=Gvermi6707.t1|Name=Gvermi6707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at ScGOVlb_88:2002181..2003404+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCATCAGTAGCGTTTGCCACCTCGTCCATTTTTGGGCTTCGCAA
GCATGTTCCCCATCCCGCTTCAAGTGTGGTGTCTCCATCTTGTACGAGGA
AGCCGCTAAGAATGGTGGCGGAGACCAAGGCCCCACGAACCGATTACAAG
CTTAACCTACGTCCTGTCGGCACTGCCGGCCTGGTCATGACCGAAGTCAC
CCTCGGAACAATGACATGGGGTCAGCAGAACTCCGAACAAGATGCTCATG
ACCAGCTTGATTATGCCTTCGAGAGGGGTGTCGTGGGTATCGATGGAGCG
GAACTCTATCCAGTGCCCGCACGTCAAGAAACGTACGGCGACACCGAGCG
GGTAATTGGCTCGTGGATCAAGAAACGCGGCGGAACTTCATTCCGGGAGA
AGCTTGTGATTTTCTCTAAGTTAGCTGGAGGCAACATTGGGGGAAGAGCT
ATGCCATGGATTCGAGGAGACGGTCGAAGAGTAGATAGGAAAAACATTAG
ACTGGCCGTGGAGGGTATTCTAAAACGACTCGGAACCGACTATATTGATC
TTCTACAAATCCACTGGCCTGACAGATATGTACCCATGTTCGGTGCAGGT
GCGTACGACATTGCAAAAGAGGTTGATTCTGTACCGTTCGAACAACAAGT
GGCCGCTATGGATGAACTAATCAAGGAAGGATTGATCCGCAATTACGGCC
TAAGCAACGAAACCGCTTGGGGCGTTTCACAGTTTGACTCGATAGCTCGA
ACAAAAGGGTATGCAAGGCCCGTATCGATTCAAAACTCGTACAGTTTGAT
ATATCGTGACTTTGAAGGGCATCTGGCGGAAGTCTGCGCGAAGGGAAACG
CAAACGTTGGCCTCCTCGCGTATAGCCCCCTTGCCGGGGGCGCCCTATCC
GGAAAATACCTCGACCCGCCCCTTCCGGAAAATTCAAGGTTTGCTCTGTA
TCCAGGATACATGCAACGGTTCCAAAGCAGTCTGGCCGCAGAAGCAATTC
GTGAGTACAAAAGAGTTGCAGACGAAGCCAATATGACACTAACGGAGTTG
TCGCTTGCTTGGTGCAAGAGCAGGTGGTTCGTTGCCAGCACTATTATTGG
TGCGACGAGCATTAAGCAATTGAAACAAAATCTGGACGCGTTTTCCGTAG
AACTTGATCCGACGGTCATCGAGGCCGTTGAGAGGGTCTACAAACGCTAT
CGGGATCCGTCCAAGACCTCTTAA

protein sequence of Gvermi6707.t1

>Gvermi6707.t1 ID=Gvermi6707.t1|Name=Gvermi6707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=408bp
MCSSVAFATSSIFGLRKHVPHPASSVVSPSCTRKPLRMVAETKAPRTDYK
LNLRPVGTAGLVMTEVTLGTMTWGQQNSEQDAHDQLDYAFERGVVGIDGA
ELYPVPARQETYGDTERVIGSWIKKRGGTSFREKLVIFSKLAGGNIGGRA
MPWIRGDGRRVDRKNIRLAVEGILKRLGTDYIDLLQIHWPDRYVPMFGAG
AYDIAKEVDSVPFEQQVAAMDELIKEGLIRNYGLSNETAWGVSQFDSIAR
TKGYARPVSIQNSYSLIYRDFEGHLAEVCAKGNANVGLLAYSPLAGGALS
GKYLDPPLPENSRFALYPGYMQRFQSSLAAEAIREYKRVADEANMTLTEL
SLAWCKSRWFVASTIIGATSIKQLKQNLDAFSVELDPTVIEAVERVYKRY
RDPSKTS*

mRNA from alignment at ScGOVlb_88:2002181..2003404+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6707.t1 ID=Gvermi6707.t1|Name=Gvermi6707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1224bp|location=Sequence derived from alignment at ScGOVlb_88:2002181..2003404+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCTCATCAGTAGCGTTTGCCACCTCGTCCATTTTTGGGCTTCGCAA
GCATGTTCCCCATCCCGCTTCAAGTGTGGTGTCTCCATCTTGTACGAGGA
AGCCGCTAAGAATGGTGGCGGAGACCAAGGCCCCACGAACCGATTACAAG
CTTAACCTACGTCCTGTCGGCACTGCCGGCCTGGTCATGACCGAAGTCAC
CCTCGGAACAATGACATGGGGTCAGCAGAACTCCGAACAAGATGCTCATG
ACCAGCTTGATTATGCCTTCGAGAGGGGTGTCGTGGGTATCGATGGAGCG
GAACTCTATCCAGTGCCCGCACGTCAAGAAACGTACGGCGACACCGAGCG
GGTAATTGGCTCGTGGATCAAGAAACGCGGCGGAACTTCATTCCGGGAGA
AGCTTGTGATTTTCTCTAAGTTAGCTGGAGGCAACATTGGGGGAAGAGCT
ATGCCATGGATTCGAGGAGACGGTCGAAGAGTAGATAGGAAAAACATTAG
ACTGGCCGTGGAGGGTATTCTAAAACGACTCGGAACCGACTATATTGATC
TTCTACAAATCCACTGGCCTGACAGATATGTACCCATGTTCGGTGCAGGT
GCGTACGACATTGCAAAAGAGGTTGATTCTGTACCGTTCGAACAACAAGT
GGCCGCTATGGATGAACTAATCAAGGAAGGATTGATCCGCAATTACGGCC
TAAGCAACGAAACCGCTTGGGGCGTTTCACAGTTTGACTCGATAGCTCGA
ACAAAAGGGTATGCAAGGCCCGTATCGATTCAAAACTCGTACAGTTTGAT
ATATCGTGACTTTGAAGGGCATCTGGCGGAAGTCTGCGCGAAGGGAAACG
CAAACGTTGGCCTCCTCGCGTATAGCCCCCTTGCCGGGGGCGCCCTATCC
GGAAAATACCTCGACCCGCCCCTTCCGGAAAATTCAAGGTTTGCTCTGTA
TCCAGGATACATGCAACGGTTCCAAAGCAGTCTGGCCGCAGAAGCAATTC
GTGAGTACAAAAGAGTTGCAGACGAAGCCAATATGACACTAACGGAGTTG
TCGCTTGCTTGGTGCAAGAGCAGGTGGTTCGTTGCCAGCACTATTATTGG
TGCGACGAGCATTAAGCAATTGAAACAAAATCTGGACGCGTTTTCCGTAG
AACTTGATCCGACGGTCATCGAGGCCGTTGAGAGGGTCTACAAACGCTAT
CGGGATCCGTCCAAGACCTCTTAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2002181..2003404+

>Gvermi6707.t1 ID=Gvermi6707.t1|Name=Gvermi6707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1224bp|location=Sequence derived from alignment at ScGOVlb_88:2002181..2003404+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCTCATCAGTAGCGTTTGCCACCTCGTCCATTTTTGGGCTTCGCAA
GCATGTTCCCCATCCCGCTTCAAGTGTGGTGTCTCCATCTTGTACGAGGA
AGCCGCTAAGAATGGTGGCGGAGACCAAGGCCCCACGAACCGATTACAAG
CTTAACCTACGTCCTGTCGGCACTGCCGGCCTGGTCATGACCGAAGTCAC
CCTCGGAACAATGACATGGGGTCAGCAGAACTCCGAACAAGATGCTCATG
ACCAGCTTGATTATGCCTTCGAGAGGGGTGTCGTGGGTATCGATGGAGCG
GAACTCTATCCAGTGCCCGCACGTCAAGAAACGTACGGCGACACCGAGCG
GGTAATTGGCTCGTGGATCAAGAAACGCGGCGGAACTTCATTCCGGGAGA
AGCTTGTGATTTTCTCTAAGTTAGCTGGAGGCAACATTGGGGGAAGAGCT
ATGCCATGGATTCGAGGAGACGGTCGAAGAGTAGATAGGAAAAACATTAG
ACTGGCCGTGGAGGGTATTCTAAAACGACTCGGAACCGACTATATTGATC
TTCTACAAATCCACTGGCCTGACAGATATGTACCCATGTTCGGTGCAGGT
GCGTACGACATTGCAAAAGAGGTTGATTCTGTACCGTTCGAACAACAAGT
GGCCGCTATGGATGAACTAATCAAGGAAGGATTGATCCGCAATTACGGCC
TAAGCAACGAAACCGCTTGGGGCGTTTCACAGTTTGACTCGATAGCTCGA
ACAAAAGGGTATGCAAGGCCCGTATCGATTCAAAACTCGTACAGTTTGAT
ATATCGTGACTTTGAAGGGCATCTGGCGGAAGTCTGCGCGAAGGGAAACG
CAAACGTTGGCCTCCTCGCGTATAGCCCCCTTGCCGGGGGCGCCCTATCC
GGAAAATACCTCGACCCGCCCCTTCCGGAAAATTCAAGGTTTGCTCTGTA
TCCAGGATACATGCAACGGTTCCAAAGCAGTCTGGCCGCAGAAGCAATTC
GTGAGTACAAAAGAGTTGCAGACGAAGCCAATATGACACTAACGGAGTTG
TCGCTTGCTTGGTGCAAGAGCAGGTGGTTCGTTGCCAGCACTATTATTGG
TGCGACGAGCATTAAGCAATTGAAACAAAATCTGGACGCGTTTTCCGTAG
AACTTGATCCGACGGTCATCGAGGCCGTTGAGAGGGTCTACAAACGCTAT
CGGGATCCGTCCAAGACCTCTTAA