Gvermi6762.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6762.t1
Unique NameGvermi6762.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2181879..2183121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707687.1
Preferred nameDRG1
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K02156,ko:K06944
KEGG Pathwayko04320,map04320
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006351,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0010646,GO:0010647,GO:0016070,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042802,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833,GO:1990904
Evalue3.12e-172
EggNOG OGsCOG1163@1|root,KOG1487@2759|Eukaryota
DescriptionGTP-binding protein
COG categoryZ
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6762Gvermi6762Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2181879..2183121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6762.t1Gvermi6762.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2181879..2183121 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6762.t1.start1Gvermi6762.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2181879..2181881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6762.t1.CDS1Gvermi6762.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2181879..2182552 +
Gvermi6762.t1.CDS2Gvermi6762.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2182680..2183121 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6762.t1.exon1Gvermi6762.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2181879..2182552 +
Gvermi6762.t1.exon2Gvermi6762.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2182680..2183121 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6762.t1.intron1Gvermi6762.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2182553..2182679 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6762.t1.stop1Gvermi6762.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2183119..2183121 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6762.t1 ID=Gvermi6762.t1|Name=Gvermi6762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp
MASTLAKIEDIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPARGGG
GGGGGDGFEVGKTGDARVGLIGFPSVGKSSLLTLLTGQHSAAAAYEFTTL
TCIPGMVHYNGARIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILVVL
DAAQPASHKRLIERELEGFGIRLNKRPPPVLMRRKDRGGVSLSSAVPTDV
TLDTVKSVCAEYRIHNADFVLRAHCTIDEVIDVIEGNRRYVPALYVVNMI
DKISMEELELFHRMPRYVPISGALQWNIDGLLEAVWRELRLVRVYTKPKG
VSVVDFDEPVILNSDERERTVGAFCRRIHKTLERELKFALVWGRSTKFNP
QKCGRDHVLCDEDVIQLVKHT*
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spliced messenger RNA

>Gvermi6762.t1 ID=Gvermi6762.t1|Name=Gvermi6762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at ScGOVlb_88:2181879..2183121+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCACGCTGGCCAAAATCGAGGACATCGAGGCCGAGATGGCGCG
CACGCAGAAGAACAAGGCCACGTCGCAGCACCTGGGCATCCTCAAGGCCA
AGCTGGCCAAGCTGCGCCGCGAGCTCATCGCGCCCGCGCgcggcggcggc
ggcggcggcggcggcgacggcTTCGAGGTGGGCAAGACGGGCGACGCGCG
CGTGGGGCTCATCGGCTTTCCGTCCGTGGGCAAGTCGTCGCTGCTCACGC
TGCTCACCGGCCAGCACAGCGCCGCCGCCGCGTACGAGTTCACCACCCTC
ACGTGCATCCCGGGCATGGTGCACTACAACGGCGCGCGCATCCAGCTGCT
GGACCTGCCGGGCATCATCGAGGGCGCCAAGGACGGCAAGGGGCGCGGGC
GGCAGGTGATTGCGGTCGCGCGCTCGTGCGACCTCATCCTCGTCGTGCTG
GACGCCGCGCAGCCCGCCAGCCACAAGCGCCTCATCGAGCGCGAGCTGGA
GGGCTTTGGCATCCGCCTCAACAAGCGGCCGCCGCCCGTGCTCATGCGCC
GCAAGGACCGCGGCGGCGTGTCGCTGTCGTCGGCCGTGCCCACCGACGTG
ACGCTGGACACGGTCAAGAGCGTGTGCGCCGAGTACCGCATTCACAACGC
CGACTTTGTGCTGCGCGCCCACTGCACCATCGACGAGGTGATCGACGTGA
TCGAGGGCAACCGGCGCTACGTGCCGGCGCTGTACGTGGTCAACATGATC
GACAAGATCAGCATGGAGGAGCTGGAGCTGTTCCACCGCATGCCGCGCTA
CGTGCCCATCAGCGGCGCGCTGCAGTGGAACATCGACGGGCTGCTGGAGG
CGGTGTGGCGCGAGCTGCGGCTGGTGCGCGTGTACACCAAGCCCAAGGGC
GTCAGCGTGGTGGACTTTGACGAGCCGGTCATCCTCAACAGCGACGAGCG
CGAGCGCACGGTGGGCGCCTTTTGCCGCCGCATCCACAAGACGCTGGAGC
GCGAGCTCAAGTTTGCGCTCGTGTGGGGGCGCAGCACCAAGTTCAACCCG
CAAAAGTGCGGCCGCGACCACGTGCTGTGCGACGAGGACGTCATCCAGCT
GGTCAAGCACACGTGA
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protein sequence of Gvermi6762.t1

>Gvermi6762.t1 ID=Gvermi6762.t1|Name=Gvermi6762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=372bp
MASTLAKIEDIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPARGGG
GGGGGDGFEVGKTGDARVGLIGFPSVGKSSLLTLLTGQHSAAAAYEFTTL
TCIPGMVHYNGARIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILVVL
DAAQPASHKRLIERELEGFGIRLNKRPPPVLMRRKDRGGVSLSSAVPTDV
TLDTVKSVCAEYRIHNADFVLRAHCTIDEVIDVIEGNRRYVPALYVVNMI
DKISMEELELFHRMPRYVPISGALQWNIDGLLEAVWRELRLVRVYTKPKG
VSVVDFDEPVILNSDERERTVGAFCRRIHKTLERELKFALVWGRSTKFNP
QKCGRDHVLCDEDVIQLVKHT*
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mRNA from alignment at ScGOVlb_88:2181879..2183121+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6762.t1 ID=Gvermi6762.t1|Name=Gvermi6762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1243bp|location=Sequence derived from alignment at ScGOVlb_88:2181879..2183121+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCCACGCTGGCCAAAATCGAGGACATCGAGGCCGAGATGGCGCG
CACGCAGAAGAACAAGGCCACGTCGCAGCACCTGGGCATCCTCAAGGCCA
AGCTGGCCAAGCTGCGCCGCGAGCTCATCGCGCCCGCGCgcggcggcggc
ggcggcggcggcggcgacggcTTCGAGGTGGGCAAGACGGGCGACGCGCG
CGTGGGGCTCATCGGCTTTCCGTCCGTGGGCAAGTCGTCGCTGCTCACGC
TGCTCACCGGCCAGCACAGCGCCGCCGCCGCGTACGAGTTCACCACCCTC
ACGTGCATCCCGGGCATGGTGCACTACAACGGCGCGCGCATCCAGCTGCT
GGACCTGCCGGGCATCATCGAGGGCGCCAAGGACGGCAAGGGGCGCGGGC
GGCAGGTGATTGCGGTCGCGCGCTCGTGCGACCTCATCCTCGTCGTGCTG
GACGCCGCGCAGCCCGCCAGCCACAAGCGCCTCATCGAGCGCGAGCTGGA
GGGCTTTGGCATCCGCCTCAACAAGCGGCCGCCGCCCGTGCTCATGCGCC
GCAAGGACCGCGGCGGCGTGTCGCTGTCGTCGGCCGTGCCCACCGACGTG
ACGCTGGACACGGTCAAGAGCGTGTGCGCCGAGTACCGCATTCACAACGC
CGACTTTGTGCTGCGCGCCCACTGGTACGTCCCTCACTCTCTCATTTTTG
TTTTGTTGTTGTTTTGCAGTGCAGCGCACACACTGACGGCCAGcaccacc
accaccaccaccaccaccaccaccacGGCACGGCGCGCGAGCGCGCAACA
GCACCATCGACGAGGTGATCGACGTGATCGAGGGCAACCGGCGCTACGTG
CCGGCGCTGTACGTGGTCAACATGATCGACAAGATCAGCATGGAGGAGCT
GGAGCTGTTCCACCGCATGCCGCGCTACGTGCCCATCAGCGGCGCGCTGC
AGTGGAACATCGACGGGCTGCTGGAGGCGGTGTGGCGCGAGCTGCGGCTG
GTGCGCGTGTACACCAAGCCCAAGGGCGTCAGCGTGGTGGACTTTGACGA
GCCGGTCATCCTCAACAGCGACGAGCGCGAGCGCACGGTGGGCGCCTTTT
GCCGCCGCATCCACAAGACGCTGGAGCGCGAGCTCAAGTTTGCGCTCGTG
TGGGGGCGCAGCACCAAGTTCAACCCGCAAAAGTGCGGCCGCGACCACGT
GCTGTGCGACGAGGACGTCATCCAGCTGGTCAAGCACACGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2181879..2183121+

>Gvermi6762.t1 ID=Gvermi6762.t1|Name=Gvermi6762.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1116bp|location=Sequence derived from alignment at ScGOVlb_88:2181879..2183121+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCCACGCTGGCCAAAATCGAGGACATCGAGGCCGAGATGGCGCG
CACGCAGAAGAACAAGGCCACGTCGCAGCACCTGGGCATCCTCAAGGCCA
AGCTGGCCAAGCTGCGCCGCGAGCTCATCGCGCCCGCGCgcggcggcggc
ggcggcggcggcggcgacggcTTCGAGGTGGGCAAGACGGGCGACGCGCG
CGTGGGGCTCATCGGCTTTCCGTCCGTGGGCAAGTCGTCGCTGCTCACGC
TGCTCACCGGCCAGCACAGCGCCGCCGCCGCGTACGAGTTCACCACCCTC
ACGTGCATCCCGGGCATGGTGCACTACAACGGCGCGCGCATCCAGCTGCT
GGACCTGCCGGGCATCATCGAGGGCGCCAAGGACGGCAAGGGGCGCGGGC
GGCAGGTGATTGCGGTCGCGCGCTCGTGCGACCTCATCCTCGTCGTGCTG
GACGCCGCGCAGCCCGCCAGCCACAAGCGCCTCATCGAGCGCGAGCTGGA
GGGCTTTGGCATCCGCCTCAACAAGCGGCCGCCGCCCGTGCTCATGCGCC
GCAAGGACCGCGGCGGCGTGTCGCTGTCGTCGGCCGTGCCCACCGACGTG
ACGCTGGACACGGTCAAGAGCGTGTGCGCCGAGTACCGCATTCACAACGC
CGACTTTGTGCTGCGCGCCCACTGCACCATCGACGAGGTGATCGACGTGA
TCGAGGGCAACCGGCGCTACGTGCCGGCGCTGTACGTGGTCAACATGATC
GACAAGATCAGCATGGAGGAGCTGGAGCTGTTCCACCGCATGCCGCGCTA
CGTGCCCATCAGCGGCGCGCTGCAGTGGAACATCGACGGGCTGCTGGAGG
CGGTGTGGCGCGAGCTGCGGCTGGTGCGCGTGTACACCAAGCCCAAGGGC
GTCAGCGTGGTGGACTTTGACGAGCCGGTCATCCTCAACAGCGACGAGCG
CGAGCGCACGGTGGGCGCCTTTTGCCGCCGCATCCACAAGACGCTGGAGC
GCGAGCTCAAGTTTGCGCTCGTGTGGGGGCGCAGCACCAAGTTCAACCCG
CAAAAGTGCGGCCGCGACCACGTGCTGTGCGACGAGGACGTCATCCAGCT
GGTCAAGCACACGTGA
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