Gvermi6740.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6740.t1
Unique NameGvermi6740.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length889
Homology
BLAST of Gvermi6740.t1 vs. uniprot
Match: R7QS45_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QS45_CHOCR)

HSP 1 Score: 335 bits (859), Expect = 1.380e-100
Identity = 208/537 (38.73%), Postives = 295/537 (54.93%), Query Frame = 0
Query:  346 LECFLSNHSATELVDVFNDKPPSPHSSAQLIIYFTDASQEAACCNQARARGKEDVLFSAESAAYVASVFRFVSASHLSYLFSRNCRLNFSSSVADIVQHAQQQCDIKCA---QVLISRPLVPDGKPRAIPNMRDNLPWVPDVVREVDILCQELLAQVPLLIRVLRRNVILAAYFKEDYSKTVADEVFRRDDEARKVLHRYLQFIVKPTLGIASLHVFEAVSHTFDLVCQAQNSHKDAKRLVDTRAFFTTLTEENCGNVPLSQEIIRLLLSSSYRTDLKAFLSVMKPLITLISMFNITRNMPLLRYSNPFFDTADL-FRCPLEFRSRSLAHVLLDCARTMRELYSEKLPEHEDDLRLLREHVACRLLGQGVDGCPPVADDITYIAALLDPNSDLPNTKGITVDEVWKRAVQYVQSRH-SGGETGVKTVLDQLDAFHNRKGQFADDSLFSKC--SEDMDPLEWWEKCGHVTPELQSLALATLSVPTTAFAAVRHITNLNASNEDLQRSVGDEEMEKRRFITWNLRLAVSRSKADVSEEV 875
            L+ F  +  A + VD          SS  LIIYF D +      +  R +  ED   S E A+ +AS F + S + L Y+ SRNC  +F S +A++V  +++ C +  A   QV I RP     +   +        W+ DV REVDIL Q+LL QVP+L R +RRN +LA++F+E YS   A  +F R+   ++   RY   I  P          E    TF ++  AQ+SHKD +R  +T +F  T+ EE+ GNV L QEI RL+LS  Y  +L+ F++VMKPL  LI  +    +             +D+    PL    RSLAHVL DC  T+R++Y E+ PE E+DLRLLR   A RL+GQG D  PP+  DI Y+A  L+P S+L   KGITVDE W+RAV ++  ++ S  +  +   ++QL  FH R G FA+  +F     +E  DP  WW+K G + P+L ++AL  L  PT AF  V+  + +N  + DL  +  DE MEK+RF+ WNLRL+    +AD S+ V
Sbjct:   69 LQAFWEHSPAAQFVDTDLSNIGEFPSSRYLIIYFPDYANAQPSRHALRRQPTEDEGNSGE-ASMIASTFLWTSGAKLYYIGSRNCSHDFKSCIAELVLQSKETCKLGKAALDQVFIGRPFETSEQSADVTKNDPVNTWISDVPREVDILAQQLLTQVPVLSRCVRRNTLLASFFRETYSSRAAVMLFGRNLAEKEQCARYKAHIALPLQLTRCCDAVENAQQTFKILSHAQSSHKDRQRFQETSSFLHTINEESAGNVQLCQEITRLVLSQPYLNELEIFIAVMKPLAKLIEKYTCVDDS---------LSASDMGSSAPLASGGRSLAHVLPDCFSTLRDIYKEQRPELENDLRLLRAMSARRLMGQGGDEYPPIVGDICYLATFLNPTSNLAAMKGITVDESWRRAVSFLHFQYGSRSDVVLDRAIEQLQDFHQRSGAFAEPGIFIAPDETEQEDPRIWWQKHGRLAPDLFTIALKVLDAPTAAFPIVKLASEMNGRHSDLYSTEKDELMEKKRFLLWNLRLS---ERADTSKNV 592          
The following BLAST results are available for this feature:
BLAST of Gvermi6740.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QS45_CHOCR1.380e-10038.73Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 831..851
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..186
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 608..861

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2130406..2133072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6740.t1Gvermi6740.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2130406..2133072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6740.t1 ID=Gvermi6740.t1|Name=Gvermi6740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=889bp
MQVAASPSAQSPSPPLPADSHQSPPKKLKRRGRPRSPVFTYFRRLVDHNG
LFLGNQCSFCSFVSRDRSENPTYLTRHIIRTCDAPQHIKDALAARFANSH
TVVHAVDAAPAAAASPQQQTTVVVSSHSLTLPDDAAKAQPLSFDSSQLNH
PLPAAASASVAHALPTPHHQQLRPLGITKSRRGRPKSPALLHFRRHIDDK
GLFIANQCIHCSFVSRDRSENSTLLLKHLLSPSCSAPDQVRQMLLASKAS
SKSLRKRAVPLAVAPDYLAHATASSAGDAQHNRQALVLSVLRFLLANDLP
LATADNPLFQHLMLTATGPAALSQAGTANAAAHADNALSSITSQQLECFL
SNHSATELVDVFNDKPPSPHSSAQLIIYFTDASQEAACCNQARARGKEDV
LFSAESAAYVASVFRFVSASHLSYLFSRNCRLNFSSSVADIVQHAQQQCD
IKCAQVLISRPLVPDGKPRAIPNMRDNLPWVPDVVREVDILCQELLAQVP
LLIRVLRRNVILAAYFKEDYSKTVADEVFRRDDEARKVLHRYLQFIVKPT
LGIASLHVFEAVSHTFDLVCQAQNSHKDAKRLVDTRAFFTTLTEENCGNV
PLSQEIIRLLLSSSYRTDLKAFLSVMKPLITLISMFNITRNMPLLRYSNP
FFDTADLFRCPLEFRSRSLAHVLLDCARTMRELYSEKLPEHEDDLRLLRE
HVACRLLGQGVDGCPPVADDITYIAALLDPNSDLPNTKGITVDEVWKRAV
QYVQSRHSGGETGVKTVLDQLDAFHNRKGQFADDSLFSKCSEDMDPLEWW
EKCGHVTPELQSLALATLSVPTTAFAAVRHITNLNASNEDLQRSVGDEEM
EKRRFITWNLRLAVSRSKADVSEEVAEGNRLKTESVLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf