Gvermi6754.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6754.t1
Unique Name	Gvermi6754.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	735

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2160032..2162236 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1110502.TMO_3542
Preferred name	infB
PFAMs	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
Max annot lvl	204441\|Rhodospirillales
KEGG ko	ko:K02519
Evalue	1.18e-110
EggNOG OGs	COG0532@1\|root,COG0532@2\|Bacteria,1MV26@1224\|Proteobacteria,2TQMY@28211\|Alphaproteobacteria,2JQK4@204441\|Rhodospirillales
Description	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6754	Gvermi6754	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2160032..2162236 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6754.t1.stop1	Gvermi6754.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2160032..2160034 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6754.t1.CDS1	Gvermi6754.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2160032..2162236 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6754.t1.exon1	Gvermi6754.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2160032..2162236 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6754.t1.start1	Gvermi6754.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2162234..2162236 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6754.t1	Gvermi6754.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2160032..2162236 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2160032..2162236-
coding sequence from alignment at ScGOVlb_88:2160032..2162236-

mRNA sequence

>Gvermi6754.t1 ID=Gvermi6754.t1|Name=Gvermi6754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=735bp
MAQMSRIGRWNSVARAWRTSQALIPQLSSRSNLLPRQVLSRTLAIAAVKE
AGEGSERRSIGDTKSRKQARPTRDHAWKKQQFTKRRPSPSKRKPQILPIR
EAVLPDIGLSSQQLAALAECSEEKVFNLAKDLDESVYTPRSMLTPALVEL
ITEELHLRVSFEPQTERLISSDEADAESDGDVDWRAPIVTVMGHVDHGKT
SLLDALRNSDVAKREAGGITQSVAAFQVPLSKGDSTAKVSFATFIDTPGH
AAFKAMRTSGAVVTDIVVLVVAADDGVMPQTIEAANLARQANVPIIVAIN
KCDMPGADPERVRYQLLDRLGLNTEQLGGDVQCVDISAKTGANLPHLLDA
ILLQADMSDLRTSRHAAGAGICLESRLDRALGSVATVVVRRGMLHVGDHV
VFQSPKVLRGDLFGRVRGIVASDSTSLQEALPGMTVGVIGVKSTIPPGAE
VRVVPNEKIAKARSREMINRNLAAASTIELANSLLLKRETELASAEEKEP
SVQQAPEEDQQVIDGSEKRTLLVLVKGEVQGSADAVAQCIQSLETAEMNV
RILSVGVGDINDMDLKIVSASRHVKESIEEPIIVAFNVKVKDSALKTAKR
FSIPILSHSLIYHLEDDVKDRINTLHSAMQTSIKIKGTASVVRVFENGSI
AGCNIDDGSLAQDDRVRVMRMPSIHSDQRVREEVFTGTVDTIKRFAKTVR
SVEKGSECGVSLKGWSGFEAGDVIEGITATAGTE*

spliced messenger RNA

>Gvermi6754.t1 ID=Gvermi6754.t1|Name=Gvermi6754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2205bp|location=Sequence derived from alignment at ScGOVlb_88:2160032..2162236- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGATGTCCCGTATCGGGCGATGGAACTCGGTTGCCCGCGCATG
GAGAACCTCACAAGCTTTAATCCCGCAACTGAGTTCTCGGTCCAACCTTC
TGCCAAGGCAAGTTCTATCAAGGACTCTGGCGATAGCCGCCGTGAAAGAG
GCGGGTGAGGGATCGGAGAGACGATCTATAGGGGATACAAAGTCGAGAAA
ACAAGCGCGACCCACGCGTGACCATGCATGGAAAAAACAGCAATTCACAA
AGAGGAGACCGTCACCGTCGAAGCGAAAACCACAAATTCTCCCCATCCGC
GAGGCCGTGCTTCCCGACATCGGACTATCATCACAGCAGTTAGCTGCGTT
GGCTGAGTGTTCCGAAGAAAAGGTCTTCAACTTAGCGAAAGATCTGGATG
AATCCGTGTACACACCGAGATCGATGCTCACTCCGGCGCTCGTGGAGCTC
ATCACGGAGGAGCTTCATCTCAGAGTGTCGTTCGAGCCACAGACAGAGCG
CTTGATTTCCTCGGATGAAGCAGATGCTGAGAGCGATGGAGACGTCGACT
GGAGAGCGCCCATCGTAACAGTCATGGGTCACGTTGACCACGGAAAAACC
TCTCTTCTTGATGCTCTGAGAAATAGTGACGTAGCAAAGCGGGAAGCCGG
AGGCATAACTCAAAGTGTTGCCGCCTTTCAAGTTCCACTATCGAAAGGAG
ACAGTACTGCGAAGGTGTCCTTTGCCACATTCATTGACACCCCTGGACAT
GCGGCTTTCAAGGCAATGCGCACAAGTGGGGCCGTCGTCACGGACATAGT
CGTGCTAGTCGTTGCAGCAGACGACGGGGTCATGCCTCAGACCATTGAGG
CAGCAAATCTGGCCCGCCAAGCGAATGTTCCCATCATCGTCGCCATCAAT
AAATGCGACATGCCCGGTGCAGATCCAGAACGTGTAAGATATCAACTTTT
GGACCGGCTCGGGCTCAACACCGAACAGCTTGGAGGCGATGTGCAATGCG
TTGACATCTCTGCGAAGACCGGAGCGAACCTGCCGCACTTGCTCGATGCT
ATTCTGTTGCAAGCTGACATGTCTGACCTTCGCACCAGTCGGCATGCAGC
TGGAGCCGGAATCTGTCTGGAGTCACGTCTGGATCGTGCATTGGGTTCGG
TTGCAACGGTTGTGGTGCGTCGTGGAATGCTGCACGTCGGCGACCATGTC
GTCTTCCAGTCGCCCAAAGTGCTGCGGGGTGATTTATTCGGTCGTGTTCG
CGGTATTGTCGCGAGCGACTCGACATCGCTACAGGAGGCGTTGCCCGGTA
TGACCGTCGGCGTGATTGGTGTAAAGTCCACAATTCCACCAGGAGCGGAA
GTACGGGTTGTACCCAACGAGAAAATTGCAAAGGCAAGGTCCCGCGAAAT
GATCAACAGAAATCTGGCAGCTGCTTCAACAATAGAGTTGGCGAACTCCT
TGCTTCTGAAACGAGAGACAGAGCTGGCTTCGGCGGAAGAAAAGGAACCG
TCAGTGCAACAAGCTCCAGAAGAAGACCAACAGGTTATTGACGGGTCTGA
GAAACGGACGCTCCTTGTGCTCGTCAAGGGCGAAGTTCAGGGAAGTGCAG
ACGCCGTAGCGCAATGCATCCAATCGCTAGAAACAGCCGAGATGAACGTG
CGCATTCTTAGTGTTGGTGTCGGAGATATTAACGACATGGATCTCAAAAT
CGTATCGGCTAGCAGGCATGTGAAGGAAAGCATAGAAGAACCAATAATCG
TAGCGTTCAACGTGAAAGTCAAAGACTCAGCTCTGAAGACAGCAAAGAGA
TTCTCAATACCGATCTTATCTCATTCATTGATTTATCACCTCGAGGATGA
TGTCAAGGATCGGATCAACACACTGCACTCTGCAATGCAAACTTCGATCA
AAATCAAGGGAACGGCTTCTGTGGTGCGCGTGTTCGAAAACGGTTCAATC
GCGGGATGTAACATTGACGACGGTTCGCTTGCTCAAGATGATAGAGTGCG
AGTGATGCGAATGCCATCAATTCACTCCGACCAGCGTGTGCGGGAGGAGG
TATTCACCGGAACAGTTGACACAATCAAACGATTTGCCAAGACAGTACGA
TCCGTCGAGAAAGGATCCGAGTGTGGAGTAAGTCTAAAAGGCTGGTCAGG
GTTCGAAGCAGGAGATGTCATAGAGGGAATTACGGCAACTGCGGGAACAG
AGTAA

protein sequence of Gvermi6754.t1

>Gvermi6754.t1 ID=Gvermi6754.t1|Name=Gvermi6754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=735bp
MAQMSRIGRWNSVARAWRTSQALIPQLSSRSNLLPRQVLSRTLAIAAVKE
AGEGSERRSIGDTKSRKQARPTRDHAWKKQQFTKRRPSPSKRKPQILPIR
EAVLPDIGLSSQQLAALAECSEEKVFNLAKDLDESVYTPRSMLTPALVEL
ITEELHLRVSFEPQTERLISSDEADAESDGDVDWRAPIVTVMGHVDHGKT
SLLDALRNSDVAKREAGGITQSVAAFQVPLSKGDSTAKVSFATFIDTPGH
AAFKAMRTSGAVVTDIVVLVVAADDGVMPQTIEAANLARQANVPIIVAIN
KCDMPGADPERVRYQLLDRLGLNTEQLGGDVQCVDISAKTGANLPHLLDA
ILLQADMSDLRTSRHAAGAGICLESRLDRALGSVATVVVRRGMLHVGDHV
VFQSPKVLRGDLFGRVRGIVASDSTSLQEALPGMTVGVIGVKSTIPPGAE
VRVVPNEKIAKARSREMINRNLAAASTIELANSLLLKRETELASAEEKEP
SVQQAPEEDQQVIDGSEKRTLLVLVKGEVQGSADAVAQCIQSLETAEMNV
RILSVGVGDINDMDLKIVSASRHVKESIEEPIIVAFNVKVKDSALKTAKR
FSIPILSHSLIYHLEDDVKDRINTLHSAMQTSIKIKGTASVVRVFENGSI
AGCNIDDGSLAQDDRVRVMRMPSIHSDQRVREEVFTGTVDTIKRFAKTVR
SVEKGSECGVSLKGWSGFEAGDVIEGITATAGTE*

mRNA from alignment at ScGOVlb_88:2160032..2162236-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6754.t1 ID=Gvermi6754.t1|Name=Gvermi6754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2205bp|location=Sequence derived from alignment at ScGOVlb_88:2160032..2162236- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAGATGTCCCGTATCGGGCGATGGAACTCGGTTGCCCGCGCATG
GAGAACCTCACAAGCTTTAATCCCGCAACTGAGTTCTCGGTCCAACCTTC
TGCCAAGGCAAGTTCTATCAAGGACTCTGGCGATAGCCGCCGTGAAAGAG
GCGGGTGAGGGATCGGAGAGACGATCTATAGGGGATACAAAGTCGAGAAA
ACAAGCGCGACCCACGCGTGACCATGCATGGAAAAAACAGCAATTCACAA
AGAGGAGACCGTCACCGTCGAAGCGAAAACCACAAATTCTCCCCATCCGC
GAGGCCGTGCTTCCCGACATCGGACTATCATCACAGCAGTTAGCTGCGTT
GGCTGAGTGTTCCGAAGAAAAGGTCTTCAACTTAGCGAAAGATCTGGATG
AATCCGTGTACACACCGAGATCGATGCTCACTCCGGCGCTCGTGGAGCTC
ATCACGGAGGAGCTTCATCTCAGAGTGTCGTTCGAGCCACAGACAGAGCG
CTTGATTTCCTCGGATGAAGCAGATGCTGAGAGCGATGGAGACGTCGACT
GGAGAGCGCCCATCGTAACAGTCATGGGTCACGTTGACCACGGAAAAACC
TCTCTTCTTGATGCTCTGAGAAATAGTGACGTAGCAAAGCGGGAAGCCGG
AGGCATAACTCAAAGTGTTGCCGCCTTTCAAGTTCCACTATCGAAAGGAG
ACAGTACTGCGAAGGTGTCCTTTGCCACATTCATTGACACCCCTGGACAT
GCGGCTTTCAAGGCAATGCGCACAAGTGGGGCCGTCGTCACGGACATAGT
CGTGCTAGTCGTTGCAGCAGACGACGGGGTCATGCCTCAGACCATTGAGG
CAGCAAATCTGGCCCGCCAAGCGAATGTTCCCATCATCGTCGCCATCAAT
AAATGCGACATGCCCGGTGCAGATCCAGAACGTGTAAGATATCAACTTTT
GGACCGGCTCGGGCTCAACACCGAACAGCTTGGAGGCGATGTGCAATGCG
TTGACATCTCTGCGAAGACCGGAGCGAACCTGCCGCACTTGCTCGATGCT
ATTCTGTTGCAAGCTGACATGTCTGACCTTCGCACCAGTCGGCATGCAGC
TGGAGCCGGAATCTGTCTGGAGTCACGTCTGGATCGTGCATTGGGTTCGG
TTGCAACGGTTGTGGTGCGTCGTGGAATGCTGCACGTCGGCGACCATGTC
GTCTTCCAGTCGCCCAAAGTGCTGCGGGGTGATTTATTCGGTCGTGTTCG
CGGTATTGTCGCGAGCGACTCGACATCGCTACAGGAGGCGTTGCCCGGTA
TGACCGTCGGCGTGATTGGTGTAAAGTCCACAATTCCACCAGGAGCGGAA
GTACGGGTTGTACCCAACGAGAAAATTGCAAAGGCAAGGTCCCGCGAAAT
GATCAACAGAAATCTGGCAGCTGCTTCAACAATAGAGTTGGCGAACTCCT
TGCTTCTGAAACGAGAGACAGAGCTGGCTTCGGCGGAAGAAAAGGAACCG
TCAGTGCAACAAGCTCCAGAAGAAGACCAACAGGTTATTGACGGGTCTGA
GAAACGGACGCTCCTTGTGCTCGTCAAGGGCGAAGTTCAGGGAAGTGCAG
ACGCCGTAGCGCAATGCATCCAATCGCTAGAAACAGCCGAGATGAACGTG
CGCATTCTTAGTGTTGGTGTCGGAGATATTAACGACATGGATCTCAAAAT
CGTATCGGCTAGCAGGCATGTGAAGGAAAGCATAGAAGAACCAATAATCG
TAGCGTTCAACGTGAAAGTCAAAGACTCAGCTCTGAAGACAGCAAAGAGA
TTCTCAATACCGATCTTATCTCATTCATTGATTTATCACCTCGAGGATGA
TGTCAAGGATCGGATCAACACACTGCACTCTGCAATGCAAACTTCGATCA
AAATCAAGGGAACGGCTTCTGTGGTGCGCGTGTTCGAAAACGGTTCAATC
GCGGGATGTAACATTGACGACGGTTCGCTTGCTCAAGATGATAGAGTGCG
AGTGATGCGAATGCCATCAATTCACTCCGACCAGCGTGTGCGGGAGGAGG
TATTCACCGGAACAGTTGACACAATCAAACGATTTGCCAAGACAGTACGA
TCCGTCGAGAAAGGATCCGAGTGTGGAGTAAGTCTAAAAGGCTGGTCAGG
GTTCGAAGCAGGAGATGTCATAGAGGGAATTACGGCAACTGCGGGAACAG
AGTAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2160032..2162236-

>Gvermi6754.t1 ID=Gvermi6754.t1|Name=Gvermi6754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2205bp|location=Sequence derived from alignment at ScGOVlb_88:2160032..2162236- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCAGATGTCCCGTATCGGGCGATGGAACTCGGTTGCCCGCGCATG
GAGAACCTCACAAGCTTTAATCCCGCAACTGAGTTCTCGGTCCAACCTTC
TGCCAAGGCAAGTTCTATCAAGGACTCTGGCGATAGCCGCCGTGAAAGAG
GCGGGTGAGGGATCGGAGAGACGATCTATAGGGGATACAAAGTCGAGAAA
ACAAGCGCGACCCACGCGTGACCATGCATGGAAAAAACAGCAATTCACAA
AGAGGAGACCGTCACCGTCGAAGCGAAAACCACAAATTCTCCCCATCCGC
GAGGCCGTGCTTCCCGACATCGGACTATCATCACAGCAGTTAGCTGCGTT
GGCTGAGTGTTCCGAAGAAAAGGTCTTCAACTTAGCGAAAGATCTGGATG
AATCCGTGTACACACCGAGATCGATGCTCACTCCGGCGCTCGTGGAGCTC
ATCACGGAGGAGCTTCATCTCAGAGTGTCGTTCGAGCCACAGACAGAGCG
CTTGATTTCCTCGGATGAAGCAGATGCTGAGAGCGATGGAGACGTCGACT
GGAGAGCGCCCATCGTAACAGTCATGGGTCACGTTGACCACGGAAAAACC
TCTCTTCTTGATGCTCTGAGAAATAGTGACGTAGCAAAGCGGGAAGCCGG
AGGCATAACTCAAAGTGTTGCCGCCTTTCAAGTTCCACTATCGAAAGGAG
ACAGTACTGCGAAGGTGTCCTTTGCCACATTCATTGACACCCCTGGACAT
GCGGCTTTCAAGGCAATGCGCACAAGTGGGGCCGTCGTCACGGACATAGT
CGTGCTAGTCGTTGCAGCAGACGACGGGGTCATGCCTCAGACCATTGAGG
CAGCAAATCTGGCCCGCCAAGCGAATGTTCCCATCATCGTCGCCATCAAT
AAATGCGACATGCCCGGTGCAGATCCAGAACGTGTAAGATATCAACTTTT
GGACCGGCTCGGGCTCAACACCGAACAGCTTGGAGGCGATGTGCAATGCG
TTGACATCTCTGCGAAGACCGGAGCGAACCTGCCGCACTTGCTCGATGCT
ATTCTGTTGCAAGCTGACATGTCTGACCTTCGCACCAGTCGGCATGCAGC
TGGAGCCGGAATCTGTCTGGAGTCACGTCTGGATCGTGCATTGGGTTCGG
TTGCAACGGTTGTGGTGCGTCGTGGAATGCTGCACGTCGGCGACCATGTC
GTCTTCCAGTCGCCCAAAGTGCTGCGGGGTGATTTATTCGGTCGTGTTCG
CGGTATTGTCGCGAGCGACTCGACATCGCTACAGGAGGCGTTGCCCGGTA
TGACCGTCGGCGTGATTGGTGTAAAGTCCACAATTCCACCAGGAGCGGAA
GTACGGGTTGTACCCAACGAGAAAATTGCAAAGGCAAGGTCCCGCGAAAT
GATCAACAGAAATCTGGCAGCTGCTTCAACAATAGAGTTGGCGAACTCCT
TGCTTCTGAAACGAGAGACAGAGCTGGCTTCGGCGGAAGAAAAGGAACCG
TCAGTGCAACAAGCTCCAGAAGAAGACCAACAGGTTATTGACGGGTCTGA
GAAACGGACGCTCCTTGTGCTCGTCAAGGGCGAAGTTCAGGGAAGTGCAG
ACGCCGTAGCGCAATGCATCCAATCGCTAGAAACAGCCGAGATGAACGTG
CGCATTCTTAGTGTTGGTGTCGGAGATATTAACGACATGGATCTCAAAAT
CGTATCGGCTAGCAGGCATGTGAAGGAAAGCATAGAAGAACCAATAATCG
TAGCGTTCAACGTGAAAGTCAAAGACTCAGCTCTGAAGACAGCAAAGAGA
TTCTCAATACCGATCTTATCTCATTCATTGATTTATCACCTCGAGGATGA
TGTCAAGGATCGGATCAACACACTGCACTCTGCAATGCAAACTTCGATCA
AAATCAAGGGAACGGCTTCTGTGGTGCGCGTGTTCGAAAACGGTTCAATC
GCGGGATGTAACATTGACGACGGTTCGCTTGCTCAAGATGATAGAGTGCG
AGTGATGCGAATGCCATCAATTCACTCCGACCAGCGTGTGCGGGAGGAGG
TATTCACCGGAACAGTTGACACAATCAAACGATTTGCCAAGACAGTACGA
TCCGTCGAGAAAGGATCCGAGTGTGGAGTAAGTCTAAAAGGCTGGTCAGG
GTTCGAAGCAGGAGATGTCATAGAGGGAATTACGGCAACTGCGGGAACAG
AGTAA