Gvermi2011.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2011.t1
Unique NameGvermi2011.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length96
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2721591..2721976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog148960.XP_006960234.1
PFAMsLSM
Max annot lvl4751|Fungi
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005688,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990726,GO:1990904
Evalue7.33e-38
EggNOG OGsCOG1958@1|root,KOG1775@2759|Eukaryota,3A5M3@33154|Opisthokonta,3P554@4751|Fungi,3V1VG@5204|Basidiomycota
Descriptionribonucleo protein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2011Gvermi2011Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2721591..2721976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2011.t1Gvermi2011.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2721591..2721976 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2011.t1.start1Gvermi2011.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2721591..2721593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2011.t1.CDS1Gvermi2011.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2721591..2721737 +
Gvermi2011.t1.CDS2Gvermi2011.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2721836..2721976 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2011.t1.exon1Gvermi2011.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2721591..2721737 +
Gvermi2011.t1.exon2Gvermi2011.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2721836..2721976 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2011.t1.intron1Gvermi2011.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 2721738..2721835 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2011.t1.stop1Gvermi2011.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2721974..2721976 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2011.t1 ID=Gvermi2011.t1|Name=Gvermi2011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=96bp
MSSKDQVPVPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIV
LEDVTEYEYSPDGAAKKHLDKILLNGGNVCMLVPGSEGPDKSPPF*
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spliced messenger RNA

>Gvermi2011.t1 ID=Gvermi2011.t1|Name=Gvermi2011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=288bp|location=Sequence derived from alignment at ScGOVlb_1622:2721591..2721976+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGAAAGACCAAGTGCCCGTCCCACAGATCCTTCCTCTGGAGCT
GGTCGACAAGTGCATCGGCAGTCGCATCTGGATCATCATGCGCGGAGAGA
AGGAGCTGGTCGGCACGCTGCGAGGTTTCGATGAGTTCGTCAACATCGTT
CTCGAGGACGTGACCGAATACGAGTACTCGCCAGACGGCGCCGCAAAGAA
ACATCTCGATAAAATTTTACTGAATGGAGGCAACGTCTGCATGCTTGTTC
CTGGATCGGAGGGTCCAGACAAATCACCGCCCTTCTGA
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protein sequence of Gvermi2011.t1

>Gvermi2011.t1 ID=Gvermi2011.t1|Name=Gvermi2011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=96bp
MSSKDQVPVPQILPLELVDKCIGSRIWIIMRGEKELVGTLRGFDEFVNIV
LEDVTEYEYSPDGAAKKHLDKILLNGGNVCMLVPGSEGPDKSPPF*
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mRNA from alignment at ScGOVlb_1622:2721591..2721976+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2011.t1 ID=Gvermi2011.t1|Name=Gvermi2011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=386bp|location=Sequence derived from alignment at ScGOVlb_1622:2721591..2721976+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCGAAAGACCAAGTGCCCGTCCCACAGATCCTTCCTCTGGAGCT
GGTCGACAAGTGCATCGGCAGTCGCATCTGGATCATCATGCGCGGAGAGA
AGGAGCTGGTCGGCACGCTGCGAGGTTTCGATGAGTTCGTCAACATCGTG
AGTAACTCTCCACAAGCCGACGCGCTCACTTGTGCATTCCGTCTTCGACG
CGTTTCGACTAACTGTGCGAGCACCACCGCCTCTTCGACCACCAGGTTCT
CGAGGACGTGACCGAATACGAGTACTCGCCAGACGGCGCCGCAAAGAAAC
ATCTCGATAAAATTTTACTGAATGGAGGCAACGTCTGCATGCTTGTTCCT
GGATCGGAGGGTCCAGACAAATCACCGCCCTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2721591..2721976+

>Gvermi2011.t1 ID=Gvermi2011.t1|Name=Gvermi2011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=288bp|location=Sequence derived from alignment at ScGOVlb_1622:2721591..2721976+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGTCGAAAGACCAAGTGCCCGTCCCACAGATCCTTCCTCTGGAGCT
GGTCGACAAGTGCATCGGCAGTCGCATCTGGATCATCATGCGCGGAGAGA
AGGAGCTGGTCGGCACGCTGCGAGGTTTCGATGAGTTCGTCAACATCGTT
CTCGAGGACGTGACCGAATACGAGTACTCGCCAGACGGCGCCGCAAAGAA
ACATCTCGATAAAATTTTACTGAATGGAGGCAACGTCTGCATGCTTGTTC
CTGGATCGGAGGGTCCAGACAAATCACCGCCCTTCTGA
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