Gvermi6812.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6812.t2
Unique Name	Gvermi6812.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2367183..2369096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.05e-25
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6812	Gvermi6812	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2367183..2369096 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6812.t2.start1	Gvermi6812.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2367183..2367185 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6812.t2.CDS1	Gvermi6812.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2367183..2369096 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6812.t2.exon1	Gvermi6812.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2367183..2369096 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6812.t2.stop1	Gvermi6812.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2369094..2369096 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6812.t2	Gvermi6812.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2367183..2369096 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2367183..2369096+
coding sequence from alignment at ScGOVlb_88:2367183..2369096+

mRNA sequence

>Gvermi6812.t2 ID=Gvermi6812.t2|Name=Gvermi6812.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=638bp
MREGTTPLVLLGSFVFALIFLLGAESSVQDERTSSISTRYTFLTREKDQT
PVYRQLHCYHSVPDRYLRLMTPEQQHDLLMMMSTAASNSVLAAQSRRAVF
VHITKCKLHPCLRAIASAITYARVTRRIAVIFIDIIDGISIPHLLQLSAN
GLLKEEAILIPLKTLMEDFHGENRTVVHDWAEFTVVHAVAPNSLTDVNSA
MEPDNISDSRAPAQDYFETLPRIGNTEDVATLDNIAALDTHVSLTLSEVV
WSRYAPRTLQEGLFQDDLRPINAIPSRLISRASILGRHRATENIESTNEM
LQSDYNIPKMLWSGMGELERKLLLLKLESKRRHGIKNPKIIFVHTQYGLG
NRLRALGSAMAFARRTGRILVLIWVPDQHLNCRFTDLFVASDEFVVSNSF
TPGEEWPFSANKKRDMKMEDVKWYNYMRVNGVKIISSGQPVLDDPERHIY
VSTCYVIQSPVTPFIIRTTSSYWQVLRTLSPHVDVVRLVERFSSYPLSSM
IGIHIRGKNIKTDITGVNATDYSEESSRTTDYWRNLTKVDSFVEEMRKQT
ADQLFYVAADQKEVLTKLEHEFPSRIFYTPRHCDSRDRDCLPFALADILL
LAKCASLRGSYWSSFSELSTRIGGARFLLAGIDFGRP*

spliced messenger RNA

>Gvermi6812.t2 ID=Gvermi6812.t2|Name=Gvermi6812.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at ScGOVlb_88:2367183..2369096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGAAGGAACAACTCCCTTGGTACTCTTGGGTTCTTTCGTGTTTGC
CTTAATTTTTCTGCTCGGGGCTGAATCATCCGTCCAGGATGAAAGGACGT
CTTCAATTTCGACAAGATATACTTTTCTGACCAGAGAGAAAGACCAAACT
CCTGTGTACCGACAACTTCACTGTTATCATTCGGTTCCAGACCGTTATCT
TCGGCTGATGACTCCAGAGCAACAGCATGATCTTTTGATGATGATGTCCA
CTGCAGCGTCGAACAGCGTTTTGGCAGCGCAAAGCCGCCGCGCAGTCTTT
GTTCATATCACCAAATGCAAACTTCATCCATGTTTGCGTGCGATCGCTAG
TGCCATCACATACGCACGGGTTACTCGCAGAATTGCAGTTATATTCATTG
ACATTATTGATGGAATTAGTATTCCTCATTTGTTACAACTGTCTGCGAAT
GGGTTACTTAAAGAAGAAGCAATTCTAATCCCGCTGAAAACCCTAATGGA
GGATTTCCACGGAGAAAACAGAACTGTTGTTCATGACTGGGCAGAGTTCA
CGGTTGTTCACGCAGTCGCTCCAAACAGTTTAACAGACGTGAACTCGGCA
ATGGAGCCGGATAACATATCCGACAGCAGAGCCCCTGCACAGGATTACTT
TGAAACTCTACCACGAATCGGGAATACGGAGGACGTAGCAACGCTAGACA
ACATCGCCGCTCTTGACACTCATGTTTCTTTAACATTATCTGAGGTAGTG
TGGTCGCGTTATGCTCCCAGAACTCTGCAAGAGGGACTCTTTCAGGACGA
TTTGCGTCCCATCAACGCTATACCTTCTCGTTTGATATCGCGAGCATCTA
TACTGGGTCGTCACCGAGCAACGGAGAACATAGAAAGTACAAACGAAATG
CTTCAGAGTGATTATAATATTCCCAAAATGCTCTGGAGCGGAATGGGAGA
ACTTGAAAGGAAACTTCTATTGCTGAAGCTCGAGAGCAAAAGGAGACATG
GAATTAAAAACCCGAAGATAATATTTGTTCATACTCAGTACGGGCTTGGA
AATCGTTTGAGAGCTCTTGGCTCCGCTATGGCCTTTGCTAGAAGGACCGG
AAGAATTTTGGTATTAATATGGGTTCCTGATCAACACCTTAACTGCAGGT
TCACTGACTTATTTGTGGCTAGTGACGAATTTGTAGTTAGTAATTCATTC
ACGCCGGGAGAGGAATGGCCTTTCTCCGCTAACAAAAAGAGAGACATGAA
AATGGAAGATGTGAAGTGGTACAATTACATGAGGGTGAACGGGGTTAAGA
TTATTTCATCTGGTCAACCTGTCTTGGATGATCCTGAGCGACATATTTAC
GTCTCCACTTGTTATGTTATTCAGTCACCAGTCACGCCGTTCATCATAAG
AACAACAAGCTCATATTGGCAAGTTTTGCGAACCTTATCGCCCCATGTGG
ATGTTGTTCGACTCGTGGAAAGATTCTCGAGCTACCCTCTGTCGAGCATG
ATTGGTATCCACATCAGGGGGAAGAACATTAAGACAGATATTACTGGGGT
GAATGCAACTGACTATTCCGAGGAGTCTTCTCGGACTACTGACTATTGGA
GAAATCTAACCAAGGTTGATTCCTTTGTGGAAGAAATGCGAAAACAGACA
GCGGATCAATTGTTTTACGTTGCTGCTGACCAGAAAGAAGTTCTGACAAA
GCTTGAACATGAATTTCCCTCGCGCATATTCTATACACCAAGGCACTGTG
ATAGTCGAGACAGAGACTGTCTGCCTTTTGCACTAGCAGATATCTTACTT
CTTGCGAAGTGTGCATCATTACGCGGAAGTTACTGGAGTTCTTTCTCGGA
ACTGTCAACTCGTATCGGCGGGGCGCGGTTCTTGCTGGCCGGCATAGACT
TTGGACGTCCGTAA

protein sequence of Gvermi6812.t2

>Gvermi6812.t2 ID=Gvermi6812.t2|Name=Gvermi6812.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=638bp
MREGTTPLVLLGSFVFALIFLLGAESSVQDERTSSISTRYTFLTREKDQT
PVYRQLHCYHSVPDRYLRLMTPEQQHDLLMMMSTAASNSVLAAQSRRAVF
VHITKCKLHPCLRAIASAITYARVTRRIAVIFIDIIDGISIPHLLQLSAN
GLLKEEAILIPLKTLMEDFHGENRTVVHDWAEFTVVHAVAPNSLTDVNSA
MEPDNISDSRAPAQDYFETLPRIGNTEDVATLDNIAALDTHVSLTLSEVV
WSRYAPRTLQEGLFQDDLRPINAIPSRLISRASILGRHRATENIESTNEM
LQSDYNIPKMLWSGMGELERKLLLLKLESKRRHGIKNPKIIFVHTQYGLG
NRLRALGSAMAFARRTGRILVLIWVPDQHLNCRFTDLFVASDEFVVSNSF
TPGEEWPFSANKKRDMKMEDVKWYNYMRVNGVKIISSGQPVLDDPERHIY
VSTCYVIQSPVTPFIIRTTSSYWQVLRTLSPHVDVVRLVERFSSYPLSSM
IGIHIRGKNIKTDITGVNATDYSEESSRTTDYWRNLTKVDSFVEEMRKQT
ADQLFYVAADQKEVLTKLEHEFPSRIFYTPRHCDSRDRDCLPFALADILL
LAKCASLRGSYWSSFSELSTRIGGARFLLAGIDFGRP*

mRNA from alignment at ScGOVlb_88:2367183..2369096+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6812.t2 ID=Gvermi6812.t2|Name=Gvermi6812.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at ScGOVlb_88:2367183..2369096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAGAAGGAACAACTCCCTTGGTACTCTTGGGTTCTTTCGTGTTTGC
CTTAATTTTTCTGCTCGGGGCTGAATCATCCGTCCAGGATGAAAGGACGT
CTTCAATTTCGACAAGATATACTTTTCTGACCAGAGAGAAAGACCAAACT
CCTGTGTACCGACAACTTCACTGTTATCATTCGGTTCCAGACCGTTATCT
TCGGCTGATGACTCCAGAGCAACAGCATGATCTTTTGATGATGATGTCCA
CTGCAGCGTCGAACAGCGTTTTGGCAGCGCAAAGCCGCCGCGCAGTCTTT
GTTCATATCACCAAATGCAAACTTCATCCATGTTTGCGTGCGATCGCTAG
TGCCATCACATACGCACGGGTTACTCGCAGAATTGCAGTTATATTCATTG
ACATTATTGATGGAATTAGTATTCCTCATTTGTTACAACTGTCTGCGAAT
GGGTTACTTAAAGAAGAAGCAATTCTAATCCCGCTGAAAACCCTAATGGA
GGATTTCCACGGAGAAAACAGAACTGTTGTTCATGACTGGGCAGAGTTCA
CGGTTGTTCACGCAGTCGCTCCAAACAGTTTAACAGACGTGAACTCGGCA
ATGGAGCCGGATAACATATCCGACAGCAGAGCCCCTGCACAGGATTACTT
TGAAACTCTACCACGAATCGGGAATACGGAGGACGTAGCAACGCTAGACA
ACATCGCCGCTCTTGACACTCATGTTTCTTTAACATTATCTGAGGTAGTG
TGGTCGCGTTATGCTCCCAGAACTCTGCAAGAGGGACTCTTTCAGGACGA
TTTGCGTCCCATCAACGCTATACCTTCTCGTTTGATATCGCGAGCATCTA
TACTGGGTCGTCACCGAGCAACGGAGAACATAGAAAGTACAAACGAAATG
CTTCAGAGTGATTATAATATTCCCAAAATGCTCTGGAGCGGAATGGGAGA
ACTTGAAAGGAAACTTCTATTGCTGAAGCTCGAGAGCAAAAGGAGACATG
GAATTAAAAACCCGAAGATAATATTTGTTCATACTCAGTACGGGCTTGGA
AATCGTTTGAGAGCTCTTGGCTCCGCTATGGCCTTTGCTAGAAGGACCGG
AAGAATTTTGGTATTAATATGGGTTCCTGATCAACACCTTAACTGCAGGT
TCACTGACTTATTTGTGGCTAGTGACGAATTTGTAGTTAGTAATTCATTC
ACGCCGGGAGAGGAATGGCCTTTCTCCGCTAACAAAAAGAGAGACATGAA
AATGGAAGATGTGAAGTGGTACAATTACATGAGGGTGAACGGGGTTAAGA
TTATTTCATCTGGTCAACCTGTCTTGGATGATCCTGAGCGACATATTTAC
GTCTCCACTTGTTATGTTATTCAGTCACCAGTCACGCCGTTCATCATAAG
AACAACAAGCTCATATTGGCAAGTTTTGCGAACCTTATCGCCCCATGTGG
ATGTTGTTCGACTCGTGGAAAGATTCTCGAGCTACCCTCTGTCGAGCATG
ATTGGTATCCACATCAGGGGGAAGAACATTAAGACAGATATTACTGGGGT
GAATGCAACTGACTATTCCGAGGAGTCTTCTCGGACTACTGACTATTGGA
GAAATCTAACCAAGGTTGATTCCTTTGTGGAAGAAATGCGAAAACAGACA
GCGGATCAATTGTTTTACGTTGCTGCTGACCAGAAAGAAGTTCTGACAAA
GCTTGAACATGAATTTCCCTCGCGCATATTCTATACACCAAGGCACTGTG
ATAGTCGAGACAGAGACTGTCTGCCTTTTGCACTAGCAGATATCTTACTT
CTTGCGAAGTGTGCATCATTACGCGGAAGTTACTGGAGTTCTTTCTCGGA
ACTGTCAACTCGTATCGGCGGGGCGCGGTTCTTGCTGGCCGGCATAGACT
TTGGACGTCCGTAA

Coding sequence (CDS) from alignment at ScGOVlb_88:2367183..2369096+

>Gvermi6812.t2 ID=Gvermi6812.t2|Name=Gvermi6812.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1914bp|location=Sequence derived from alignment at ScGOVlb_88:2367183..2369096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAGAAGGAACAACTCCCTTGGTACTCTTGGGTTCTTTCGTGTTTGC
CTTAATTTTTCTGCTCGGGGCTGAATCATCCGTCCAGGATGAAAGGACGT
CTTCAATTTCGACAAGATATACTTTTCTGACCAGAGAGAAAGACCAAACT
CCTGTGTACCGACAACTTCACTGTTATCATTCGGTTCCAGACCGTTATCT
TCGGCTGATGACTCCAGAGCAACAGCATGATCTTTTGATGATGATGTCCA
CTGCAGCGTCGAACAGCGTTTTGGCAGCGCAAAGCCGCCGCGCAGTCTTT
GTTCATATCACCAAATGCAAACTTCATCCATGTTTGCGTGCGATCGCTAG
TGCCATCACATACGCACGGGTTACTCGCAGAATTGCAGTTATATTCATTG
ACATTATTGATGGAATTAGTATTCCTCATTTGTTACAACTGTCTGCGAAT
GGGTTACTTAAAGAAGAAGCAATTCTAATCCCGCTGAAAACCCTAATGGA
GGATTTCCACGGAGAAAACAGAACTGTTGTTCATGACTGGGCAGAGTTCA
CGGTTGTTCACGCAGTCGCTCCAAACAGTTTAACAGACGTGAACTCGGCA
ATGGAGCCGGATAACATATCCGACAGCAGAGCCCCTGCACAGGATTACTT
TGAAACTCTACCACGAATCGGGAATACGGAGGACGTAGCAACGCTAGACA
ACATCGCCGCTCTTGACACTCATGTTTCTTTAACATTATCTGAGGTAGTG
TGGTCGCGTTATGCTCCCAGAACTCTGCAAGAGGGACTCTTTCAGGACGA
TTTGCGTCCCATCAACGCTATACCTTCTCGTTTGATATCGCGAGCATCTA
TACTGGGTCGTCACCGAGCAACGGAGAACATAGAAAGTACAAACGAAATG
CTTCAGAGTGATTATAATATTCCCAAAATGCTCTGGAGCGGAATGGGAGA
ACTTGAAAGGAAACTTCTATTGCTGAAGCTCGAGAGCAAAAGGAGACATG
GAATTAAAAACCCGAAGATAATATTTGTTCATACTCAGTACGGGCTTGGA
AATCGTTTGAGAGCTCTTGGCTCCGCTATGGCCTTTGCTAGAAGGACCGG
AAGAATTTTGGTATTAATATGGGTTCCTGATCAACACCTTAACTGCAGGT
TCACTGACTTATTTGTGGCTAGTGACGAATTTGTAGTTAGTAATTCATTC
ACGCCGGGAGAGGAATGGCCTTTCTCCGCTAACAAAAAGAGAGACATGAA
AATGGAAGATGTGAAGTGGTACAATTACATGAGGGTGAACGGGGTTAAGA
TTATTTCATCTGGTCAACCTGTCTTGGATGATCCTGAGCGACATATTTAC
GTCTCCACTTGTTATGTTATTCAGTCACCAGTCACGCCGTTCATCATAAG
AACAACAAGCTCATATTGGCAAGTTTTGCGAACCTTATCGCCCCATGTGG
ATGTTGTTCGACTCGTGGAAAGATTCTCGAGCTACCCTCTGTCGAGCATG
ATTGGTATCCACATCAGGGGGAAGAACATTAAGACAGATATTACTGGGGT
GAATGCAACTGACTATTCCGAGGAGTCTTCTCGGACTACTGACTATTGGA
GAAATCTAACCAAGGTTGATTCCTTTGTGGAAGAAATGCGAAAACAGACA
GCGGATCAATTGTTTTACGTTGCTGCTGACCAGAAAGAAGTTCTGACAAA
GCTTGAACATGAATTTCCCTCGCGCATATTCTATACACCAAGGCACTGTG
ATAGTCGAGACAGAGACTGTCTGCCTTTTGCACTAGCAGATATCTTACTT
CTTGCGAAGTGTGCATCATTACGCGGAAGTTACTGGAGTTCTTTCTCGGA
ACTGTCAACTCGTATCGGCGGGGCGCGGTTCTTGCTGGCCGGCATAGACT
TTGGACGTCCGTAA