Gvermi6737.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6737.t1
Unique Name	Gvermi6737.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	255

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2123054..2123818 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1487953.JMKF01000065_gene4581
PFAMs	DUF2064,Glycos_transf_2
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K09931
Evalue	6.59e-63
EggNOG OGs	COG1216@1\|root,COG3222@1\|root,COG1216@2\|Bacteria,COG3222@2\|Bacteria,1G0X3@1117\|Cyanobacteria,1HHXX@1150\|Oscillatoriales
Description	Glycosyl transferase family 2
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6737	Gvermi6737	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2123054..2123818 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6737.t1.start1	Gvermi6737.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2123054..2123056 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6737.t1.CDS1	Gvermi6737.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2123054..2123818 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6737.t1.exon1	Gvermi6737.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2123054..2123818 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6737.t1.stop1	Gvermi6737.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2123816..2123818 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6737.t1	Gvermi6737.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2123054..2123818 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2123054..2123818+
coding sequence from alignment at ScGOVlb_88:2123054..2123818+

mRNA sequence

>Gvermi6737.t1 ID=Gvermi6737.t1|Name=Gvermi6737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=255bp
MLSWLPPILVPTPRVTVIIPTYNESSTISRTIRALKQNCDAPIQIIVADG
HSADDTTSTASRAGAEVLRVRGGRGIQLNKAVPLARASNLLFLHADTIVP
PAFDNEITRVLAERDVVAGAFRLRIDSELLGIRCVQTVANWRSRFLQRPY
GDQGLFISKRSFNQVGGYPSMPFLEDYELVRRLSRMGRVKTARTSVITNG
RRWETLGVAQTTIMNQLVLISYHLGVSPTRLGLWYRGVLKKAVSLKRRNA
SPTS*

spliced messenger RNA

>Gvermi6737.t1 ID=Gvermi6737.t1|Name=Gvermi6737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_88:2123054..2123818+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAGTTGGCTTCCGCCGATTCTTGTCCCGACCCCGCGCGTCACAGT
TATCATTCCCACGTACAATGAGTCCAGCACAATCTCGCGCACGATCCGGG
CGCTGAAGCAAAACTGCGACGCCCCAATTCAGATCATTGTGGCCGACGGG
CACTCCGCCGATGACACGACGTCCACTGCCAGCAGAGCCGGCGCAGAAGT
GCTGCGCGTGCGCGGCGGGCGCGGCATTCAGCTCAATAAAGCCGTCCCAC
TCGCCAGGGCCTCGAACCTTCTCTTTCTGCACGCGGACACAATCGTGCCA
CCCGCCTTCGACAACGAAATCACGCGCGTGCTCGCAGAGCGCGATGTGGT
AGCCGGCGCGTTTCGACTACGAATAGATTCCGAGCTGCTGGGTATCCGCT
GCGTGCAGACGGTTGCCAATTGGCGCTCGCGTTTCCTTCAAAGGCCGTAC
GGTGACCAGGGATTGTTCATCTCAAAGAGGAGCTTCAACCAAGTCGGCGG
ATATCCATCGATGCCATTTCTTGAAGATTACGAACTGGTGCGCAGGCTCT
CGCGCATGGGGCGCGTGAAAACGGCAAGGACGAGCGTCATCACCAACGGA
AGAAGATGGGAGACGCTTGGCGTGGCTCAGACAACGATCATGAATCAGCT
GGTTTTGATATCGTATCACCTCGGTGTGAGCCCGACGAGGCTGGGGTTGT
GGTACAGAGGCGTGCTCAAAAAAGCCGTCTCGTTAAAAAGAAGAAACGCC
TCCCCTACATCATGA

protein sequence of Gvermi6737.t1

>Gvermi6737.t1 ID=Gvermi6737.t1|Name=Gvermi6737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=255bp
MLSWLPPILVPTPRVTVIIPTYNESSTISRTIRALKQNCDAPIQIIVADG
HSADDTTSTASRAGAEVLRVRGGRGIQLNKAVPLARASNLLFLHADTIVP
PAFDNEITRVLAERDVVAGAFRLRIDSELLGIRCVQTVANWRSRFLQRPY
GDQGLFISKRSFNQVGGYPSMPFLEDYELVRRLSRMGRVKTARTSVITNG
RRWETLGVAQTTIMNQLVLISYHLGVSPTRLGLWYRGVLKKAVSLKRRNA
SPTS*

mRNA from alignment at ScGOVlb_88:2123054..2123818+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6737.t1 ID=Gvermi6737.t1|Name=Gvermi6737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp|location=Sequence derived from alignment at ScGOVlb_88:2123054..2123818+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAGTTGGCTTCCGCCGATTCTTGTCCCGACCCCGCGCGTCACAGT
TATCATTCCCACGTACAATGAGTCCAGCACAATCTCGCGCACGATCCGGG
CGCTGAAGCAAAACTGCGACGCCCCAATTCAGATCATTGTGGCCGACGGG
CACTCCGCCGATGACACGACGTCCACTGCCAGCAGAGCCGGCGCAGAAGT
GCTGCGCGTGCGCGGCGGGCGCGGCATTCAGCTCAATAAAGCCGTCCCAC
TCGCCAGGGCCTCGAACCTTCTCTTTCTGCACGCGGACACAATCGTGCCA
CCCGCCTTCGACAACGAAATCACGCGCGTGCTCGCAGAGCGCGATGTGGT
AGCCGGCGCGTTTCGACTACGAATAGATTCCGAGCTGCTGGGTATCCGCT
GCGTGCAGACGGTTGCCAATTGGCGCTCGCGTTTCCTTCAAAGGCCGTAC
GGTGACCAGGGATTGTTCATCTCAAAGAGGAGCTTCAACCAAGTCGGCGG
ATATCCATCGATGCCATTTCTTGAAGATTACGAACTGGTGCGCAGGCTCT
CGCGCATGGGGCGCGTGAAAACGGCAAGGACGAGCGTCATCACCAACGGA
AGAAGATGGGAGACGCTTGGCGTGGCTCAGACAACGATCATGAATCAGCT
GGTTTTGATATCGTATCACCTCGGTGTGAGCCCGACGAGGCTGGGGTTGT
GGTACAGAGGCGTGCTCAAAAAAGCCGTCTCGTTAAAAAGAAGAAACGCC
TCCCCTACATCATGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2123054..2123818+

>Gvermi6737.t1 ID=Gvermi6737.t1|Name=Gvermi6737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=765bp|location=Sequence derived from alignment at ScGOVlb_88:2123054..2123818+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAGTTGGCTTCCGCCGATTCTTGTCCCGACCCCGCGCGTCACAGT
TATCATTCCCACGTACAATGAGTCCAGCACAATCTCGCGCACGATCCGGG
CGCTGAAGCAAAACTGCGACGCCCCAATTCAGATCATTGTGGCCGACGGG
CACTCCGCCGATGACACGACGTCCACTGCCAGCAGAGCCGGCGCAGAAGT
GCTGCGCGTGCGCGGCGGGCGCGGCATTCAGCTCAATAAAGCCGTCCCAC
TCGCCAGGGCCTCGAACCTTCTCTTTCTGCACGCGGACACAATCGTGCCA
CCCGCCTTCGACAACGAAATCACGCGCGTGCTCGCAGAGCGCGATGTGGT
AGCCGGCGCGTTTCGACTACGAATAGATTCCGAGCTGCTGGGTATCCGCT
GCGTGCAGACGGTTGCCAATTGGCGCTCGCGTTTCCTTCAAAGGCCGTAC
GGTGACCAGGGATTGTTCATCTCAAAGAGGAGCTTCAACCAAGTCGGCGG
ATATCCATCGATGCCATTTCTTGAAGATTACGAACTGGTGCGCAGGCTCT
CGCGCATGGGGCGCGTGAAAACGGCAAGGACGAGCGTCATCACCAACGGA
AGAAGATGGGAGACGCTTGGCGTGGCTCAGACAACGATCATGAATCAGCT
GGTTTTGATATCGTATCACCTCGGTGTGAGCCCGACGAGGCTGGGGTTGT
GGTACAGAGGCGTGCTCAAAAAAGCCGTCTCGTTAAAAAGAAGAAACGCC
TCCCCTACATCATGA