Gvermi6709.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6709.t1
Unique NameGvermi6709.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2011701..2017380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6709Gvermi6709Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2011701..2017380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6709.t1Gvermi6709.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2011701..2017380 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6709.t1.start1Gvermi6709.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2011701..2011703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6709.t1.CDS1Gvermi6709.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2011701..2012197 +
Gvermi6709.t1.CDS2Gvermi6709.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2016711..2017380 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6709.t1.exon1Gvermi6709.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2011701..2012197 +
Gvermi6709.t1.exon2Gvermi6709.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2016711..2017380 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6709.t1.intron1Gvermi6709.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2012198..2016710 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6709.t1.stop1Gvermi6709.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2017378..2017380 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6709.t1 ID=Gvermi6709.t1|Name=Gvermi6709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=389bp
MSRFARVFDQVAQLDKDVHMELAEFLETDIRKESQWCHGRSLEIIPEENR
QQQLSTRFRTSAQQQWNFHPSPESLRIFEEIKAAKDAGTSGDFVRCSAYV
SGSNSFEKELWQYFRSGKETHCAFFGYDLLRNAVDEHHGTLETTELNRLS
RSELAAGKEQLEKGFRHFVFNYPTPTTMILFEMLFGKKSQPGRPHSNASQ
AGGQSRHIGSSGASTDHTLQHQQVEKQESHARRTAFAVHPKSLRIFDKIR
AAKHAVPPEDFFETAGAMNESRSFERELRCYITSGKTQHNARIGYDTPSD
EEEEPDDSMTAETGAQVEESDTLPADANSSSHQNISNAGRCNWFGFDSAV
RQITGLPGAVWNLAKYVADSLNELTRRTWRAVRCWIFP*
back to top

spliced messenger RNA

>Gvermi6709.t1 ID=Gvermi6709.t1|Name=Gvermi6709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_88:2011701..2017380+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGCTTTGCCAGGGTCTTCGATCAGGTTGCACAACTCGACAAAGA
CGTCCACATGGAACTCGCGGAGTTCTTGGAGACGGACATACGCAAGGAAT
CACAGTGGTGTCATGGCCGCTCCTTGGAAATCATCCCGGAAGAGAACCGT
CAGCAGCAGCTTTCGACTAGGTTCAGGACTTCTGCACAACAGCAATGGAA
TTTTCATCCCAGCCCTGAAAGCCTGCGCATATTTGAGGAGATAAAAGCGG
CGAAAGACGCGGGGACGTCCGGCGACTTCGTCAGATGCTCTGCATATGTC
TCGGGGAGCAACAGTTTTGAGAAGGAGCTTTGGCAGTATTTTCGAAGCGG
AAAAGAAACTCATTGTGCTTTCTTTGGGTACGATCTGCTCAGGAACGCAG
TTGATGAGCATCATGGAACACTTGAAACCACTGAATTAAATAGATTAAGC
CGAAGTGAACTTGCTGCAGGCAAAGAACAATTGGAAAAGGGGTTTCGCCA
CTTTGTCTTCAACTACCCTACACCAACAACAATGATTCTTTTCGAGATGC
TTTTCGGCAAAAAATCCCAACCAGGCAGGCCGCACTCTAATGCCTCCCAA
GCTGGTGGGCAGTCTCGCCATATAGGCTCATCAGGCGCTTCCACAGACCA
TACGCTCCAACATCAGCAGGTAGAAAAACAGGAGTCACACGCGAGGCGCA
CAGCTTTTGCAGTTCATCCTAAAAGCCTGCGCATCTTTGACAAAATTAGA
GCTGCCAAGCATGCGGTCCCGCCAGAAGATTTTTTTGAGACAGCGGGCGC
TATGAATGAAAGCAGAAGCTTTGAAAGAGAGCTTCGATGTTACATCACGA
GCGGCAAGACGCAGCACAACGCACGTATTGGGTATGACACACCCTCCGAT
GAGGAGGAGGAGCCTGATGACTCAATGACAGCCGAGACCGGGGCGCAAGT
CGAAGAAAGTGACACACTCCCGGCCGATGCGAACAGCAGCAGTCATCAAA
ACATCTCCAATGCTGGAAGGTGCAATTGGTTTGGGTTTGATAGTGCTGTG
AGACAGATTACGGGCTTGCCGGGCGCTGTTTGGAACTTGGCAAAATACGT
TGCAGATAGTTTAAATGAACTGACGCGGCGCACATGGAGAGCGGTTAGAT
GTTGGATCTTTCCTTAA
back to top

protein sequence of Gvermi6709.t1

>Gvermi6709.t1 ID=Gvermi6709.t1|Name=Gvermi6709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=389bp
MSRFARVFDQVAQLDKDVHMELAEFLETDIRKESQWCHGRSLEIIPEENR
QQQLSTRFRTSAQQQWNFHPSPESLRIFEEIKAAKDAGTSGDFVRCSAYV
SGSNSFEKELWQYFRSGKETHCAFFGYDLLRNAVDEHHGTLETTELNRLS
RSELAAGKEQLEKGFRHFVFNYPTPTTMILFEMLFGKKSQPGRPHSNASQ
AGGQSRHIGSSGASTDHTLQHQQVEKQESHARRTAFAVHPKSLRIFDKIR
AAKHAVPPEDFFETAGAMNESRSFERELRCYITSGKTQHNARIGYDTPSD
EEEEPDDSMTAETGAQVEESDTLPADANSSSHQNISNAGRCNWFGFDSAV
RQITGLPGAVWNLAKYVADSLNELTRRTWRAVRCWIFP*
back to top

mRNA from alignment at ScGOVlb_88:2011701..2017380+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6709.t1 ID=Gvermi6709.t1|Name=Gvermi6709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=5680bp|location=Sequence derived from alignment at ScGOVlb_88:2011701..2017380+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCGCTTTGCCAGGGTCTTCGATCAGGTTGCACAACTCGACAAAGA
CGTCCACATGGAACTCGCGGAGTTCTTGGAGACGGACATACGCAAGGAAT
CACAGTGGTGTCATGGCCGCTCCTTGGAAATCATCCCGGAAGAGAACCGT
CAGCAGCAGCTTTCGACTAGGTTCAGGACTTCTGCACAACAGCAATGGAA
TTTTCATCCCAGCCCTGAAAGCCTGCGCATATTTGAGGAGATAAAAGCGG
CGAAAGACGCGGGGACGTCCGGCGACTTCGTCAGATGCTCTGCATATGTC
TCGGGGAGCAACAGTTTTGAGAAGGAGCTTTGGCAGTATTTTCGAAGCGG
AAAAGAAACTCATTGTGCTTTCTTTGGGTACGATCTGCTCAGGAACGCAG
TTGATGAGCATCATGGAACACTTGAAACCACTGAATTAAATAGATTAAGC
CGAAGTGAACTTGCTGCAGGCAAAGAACAATTGGAAAAGGGGTTTCGGTG
TGTTTTGCCTACCGACATTCAAAGACTCCAGCTTGCGCCTCATTGCAACA
AAAGGGAAGACCATAAGCTCAAAAGGCGTTGCATCAGGACACGGTTTGAG
GAAGTTCGCCGAAAATTGCAATCTTTTTGTTGTTCTTTTTGGAATCAAAC
TGAACATTGTGCGCGACATATCGGAAAGTTAATTCGTCGAGGATGGAAAG
CGTTACAAGTTTGGCTTCGGTGGCGAATTGAAGAGCTTCCTTAAAGCGAC
AAAAACTGTACGGCTCTTGGGATCCAAGAGAGTTAAAAGTAGCTTGGACA
AGCAGTCTCTGCATGTGTGAAACACAATTTAGACTATGTGTGAAAAAAAG
TTGTTCGTCTTTCCTACTTTCTCTGAAACACAGATTGTAGTTCACATGCG
TACTTATTACAATTTTGAAAGGTGAACTCGGGAAACGCTTTTATCAAGAC
TAGAAATAAAATATGGCGAGAAGCATATCCTACACGAATTTGAATAGGTC
TTCATGAGAATTACAGCTAATTTAAATTAGAAATCATGGCCTCGAGAGAT
AATCCTGCTATCTTCTACGAATTCTAATTTACTGAACTAAACTATGGTCA
ACAGCGTATCCGACGAGAATTGACAAAGTCATCAAGATACGTCATACTAA
TTAATTTCGGGAGCCTTTTGATTCAAACGTGTCTCCTTCTGCGCTATCTT
TGAATTTCCATTAAACTAAAACTTATGTGCTCCAGAAACTGTATTATTTT
TCCCTACGGCTTACTATTTCTCAATAGAAATTTAAAGCAGATTCTGAAGG
TTTGTTCTTTTTCAAACCATCATTTACTCTTTTCTATTCTGCTTCAAATC
AATCGCTGTTGGTTTAGTAGCCGCCAACATGTCTCCATCACACATTACAG
AATCAAAATTTTTGATTTTTTTTTATGTCCTTTACATTGATTATTTAGTA
GCATTTTCGCAAGCCATTGCCGCCTTGATCATCAGACGTGAGAAGTCTCA
ATTCAATTTCAAAGAAGTTTGTGCTCCTGATACAGTGTGTAGTCTTATCA
GGGCAGATTCAATGCCCGTCAGATAAATAAGGCACAGATGTAGCTTTCAA
ACAAAACAATGTACTCTTGGTTTCTTGTGTGTTCCAAATATTTGTCATGA
CAATGAATCGTTCACTCCAGTGCTAAAACAAGTACGGCCGTGAGAAACCC
ATATGTAATAAAGACTTAAAATTGCTGAAATGACGAAGCAAGAATGATGC
GAGTGAAAAGCGATGGACGTCTCTTAGAAAACATTTAATTTACAGCACAT
TTAAAATCATTACATCTTGAGTACACTGTATCCACCACCGCATCGCAAAT
TAAACATGATGCTGTTTAGAGCAGCTGAGCCATGATATCGAGCAAGCTGC
TTGAAACACGTAAGAATGGCCCTCCGGGAATCAAGAATTATTCGAAGAAT
CCTCTTTTTTCCATCAAAATTTTTATTTCTATGGGATACTAAAGAATGGC
AAACTCTCCCATTCGCGCATTCATGGTATCGTTCTCTCATATACGCTCTA
CGCATCTTTACGTTTTTGCGATACTCCCGCCGTTAATTGCTCGTCTATTT
GAACAATGACCCGTTTTCTACAGCGTTTCAACAAAGCATCATATCCAGAC
AAGCAGCCCTCGACAGTCTCCGTTGTTTGGTCAAAGTAGGATCATCGCAA
TCCAGCTTCCCATTCAGAATCTGTGCTCCAAAACCATGAGTTGAAAAAGC
ACGTGCCATACTCACAGCGCACAACTTTCCACAGCGATCTCGACAGCCTG
GTGTATTCGAGTAAAGCAGAGACGCAAAGAATGTGAGCTTAAACATGGGG
TGTTTCACGGCCCGCACACTGTGCAAGGCAGCTAAATATTTGAGTGGTAA
CCTAGGGGGTACCTGGAGAGTAAAGAGACGTAGCACTGTGCGCGTACTGG
ATATAATATGCCCGCCGATGTGCAGCATGTATCTGATGTCACATTTGATC
CGCCGATATCAGAGACTGGTATGCAGGTCACAATAACTGTCCCAATCGGA
ACTTGTTTGGAGGGGGACTTGCTTCAAATGAAACTTGTTTCCTATGGAGC
TGCAATCAACATATCAAGGGTGGCGTGATGCAAAAGGTTTCTTGTTTCAG
CAGGTGATGAGAAACATGAAGCGCTTGTGCAGTGCTGTTTGGAAATGGGT
ACAGGCAATGGCTGATATTCTGGACGAATTGAAGCACAGTGGCATGGGTT
GGGAACTGTGCGGCGGTGGTGTGCTGAACAATTTCAAAGGTTTGGAGATC
CCTGACTTGGTTGAGTTTTCAGAAACCAGAATGTGCAGTAGTCATTGCAC
ATTTTATTACGTAATGTTCATAAATATGTAGAGAAAGCGCTTAAATCTAC
GCTTTTCCGATGTTTTCAATAAGCTGTTTCGTCATGCGCATATTGAGTGC
AAACTGAAACGCACAAAATCCAAGCACAGAATTTGCGTCTTTCGGTACTT
GCGCTTCATTTTGCAACGTATGATGCGAAATAATGGAAATTTGTGAAATT
CACACCATGCGGTTTGTGGGTATGACTGACCCGCATTGTCGTTTCTTGAG
GATTGCTGTTCACACCACGCACTGAACAATCGAAAGCAGTTCTCGGAATC
CATATGGCTCGCTGCAAACAGAAACATGAAGGAACAGATAGAGTTAAAGA
TGAGCTCTACTGCGCAGAAAGACTGACTGGGACTCGAATATTTCAGGGGC
GTACAGAGAGTCAAAATGGTGCTGGTCGGCTTTAGGATCGTCTTGATTCA
GAGACCAGTTCTATATCAGACTGAAACGTAACCTCGCTTGAGCGAAAGCT
CAAAGCTGCCTACTCGAACCGGAAGTGGTTTGTACTCACTTATGTTGCAC
GATCGACAAGAGTACCTTTGATTCTCAGGCACGGTTGCTTCGGCGAGGAG
CATTCGCGGGAAAAAAAACCACACACTATGATAGCTGCCTGAAATAAACA
AAATATTTCTTTTTGTGACACAAAAACGAGAAAAACTGTAGTAATAAAAT
TAAAAAAAGTGCACTTGTTTCTGGTGCTTTTGTCTCTTCCGGTTGCAACC
GATATCACGGCCACCAAAGAAATGATTACCATTCTCGTCGGAAACTTTAT
GCATATTTGTGCTTCTAGGTTGCACTCATTCAAATGATTATTACCGGTGA
GCAAGCTTGCAGCTTCTACGTTGTACTTGATGCGCTTTGCCACTTGTACA
AACCTTAACACAAAAGCAAGTATGCAAATATTCCAAATATATGCAATAAA
GCACCGCAGCTTATGCAAAACATTTCGGTTCATTTTAAGGCAGTGGTATG
GGATATTATGATTCCAGAGACTGAATTGAAAAAGAAAAATGATCTTTTCC
AAATTGTTTCTGGCTTTCGAGGAGTTCTTTTCCTGTGTGACAAGGACATG
TTCGGAGTGTAACTCTGTTAGCCGCAGCGATGGAGAATATCTGCAACACT
GCCTCATTCTGTGACAACCTGCTTTATATAAATAATTTTCGAAAAAAGCA
TCAGACGGCAACAAACTCATCCACACCTTTTGATCCTGACTATAATTTAT
GGTAGTATTTCTGAATATGATACGAAATAGAATATCTTTCGTTAGTACAA
ACATCATATTTTCTTATTGTCATGTGTCGATTGATTTTAAAGAGTACTCT
GCTGCTTTTTGAGTATTTATTTGTTTGTATGAAAATACTGATTCTTTCTG
AATATTGATTTTGCTGCTTTAATGTCCATTGACATAGCGAAATGAGCCCA
ATACGTATCGTACTCCCTTTCATATCTGGACTGCTGTTTTAGGATTTGGT
TTGCAAGAATGGATCCTCGTTAGTAAGATAAATATGAAGTAATATTGAGT
CGCAAGAACTTATCTTCGTTAGCACGATAAATATGAAGAAACATGACAAC
AAATAGCAGTTTTGAATCCAGTTTTAATATTGTAGCCCATGAAAAGGCTC
TAAATCTGATAAAATTCTGCAACCATCCTATATTTTGAATTCTATGGAGA
AAAGCAAAAATCTGCATGGAGGAAAAACAGAGACACAATGCACATTCTTT
TACATTATCCATGGTACATGGATTTTATTTCATAAAAGACATCGGGCTAT
AATCCAGATCAAAGTCCAGCAGAAAGGATTCCCCTTACAAAACGAGCCGT
AAGATACTGACTGATGTTGCATCTAGTTTTATGAGAATAGATACACTTTA
AAGTACGCCTAGAAGAACCTCAACGTGAGTACCATATCATTCACCCCATC
GAAGATTTAGTATGATGCTGATTCGCAAAACACTTGTATGAACTCAATCT
CGCACGATGTACTAGAAATGACTGGTTTTTTCATGTTAAGCTGCAAGTAT
ACACAGAGACGTTGCGTCTGAACATGTACATAAGAACTGCATCTCAGGCA
TTCACCATTCGCTCCCTTTTGCAATCTGTTTTTGTCCTGCACATCTCTTT
AATTTTGCAGCCACTTTGTCTTCAACTACCCTACACCAACAACAATGATT
CTTTTCGAGATGCTTTTCGGCAAAAAATCCCAACCAGGCAGGCCGCACTC
TAATGCCTCCCAAGCTGGTGGGCAGTCTCGCCATATAGGCTCATCAGGCG
CTTCCACAGACCATACGCTCCAACATCAGCAGGTAGAAAAACAGGAGTCA
CACGCGAGGCGCACAGCTTTTGCAGTTCATCCTAAAAGCCTGCGCATCTT
TGACAAAATTAGAGCTGCCAAGCATGCGGTCCCGCCAGAAGATTTTTTTG
AGACAGCGGGCGCTATGAATGAAAGCAGAAGCTTTGAAAGAGAGCTTCGA
TGTTACATCACGAGCGGCAAGACGCAGCACAACGCACGTATTGGGTATGA
CACACCCTCCGATGAGGAGGAGGAGCCTGATGACTCAATGACAGCCGAGA
CCGGGGCGCAAGTCGAAGAAAGTGACACACTCCCGGCCGATGCGAACAGC
AGCAGTCATCAAAACATCTCCAATGCTGGAAGGTGCAATTGGTTTGGGTT
TGATAGTGCTGTGAGACAGATTACGGGCTTGCCGGGCGCTGTTTGGAACT
TGGCAAAATACGTTGCAGATAGTTTAAATGAACTGACGCGGCGCACATGG
AGAGCGGTTAGATGTTGGATCTTTCCTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_88:2011701..2017380+

>Gvermi6709.t1 ID=Gvermi6709.t1|Name=Gvermi6709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1167bp|location=Sequence derived from alignment at ScGOVlb_88:2011701..2017380+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCCGCTTTGCCAGGGTCTTCGATCAGGTTGCACAACTCGACAAAGA
CGTCCACATGGAACTCGCGGAGTTCTTGGAGACGGACATACGCAAGGAAT
CACAGTGGTGTCATGGCCGCTCCTTGGAAATCATCCCGGAAGAGAACCGT
CAGCAGCAGCTTTCGACTAGGTTCAGGACTTCTGCACAACAGCAATGGAA
TTTTCATCCCAGCCCTGAAAGCCTGCGCATATTTGAGGAGATAAAAGCGG
CGAAAGACGCGGGGACGTCCGGCGACTTCGTCAGATGCTCTGCATATGTC
TCGGGGAGCAACAGTTTTGAGAAGGAGCTTTGGCAGTATTTTCGAAGCGG
AAAAGAAACTCATTGTGCTTTCTTTGGGTACGATCTGCTCAGGAACGCAG
TTGATGAGCATCATGGAACACTTGAAACCACTGAATTAAATAGATTAAGC
CGAAGTGAACTTGCTGCAGGCAAAGAACAATTGGAAAAGGGGTTTCGCCA
CTTTGTCTTCAACTACCCTACACCAACAACAATGATTCTTTTCGAGATGC
TTTTCGGCAAAAAATCCCAACCAGGCAGGCCGCACTCTAATGCCTCCCAA
GCTGGTGGGCAGTCTCGCCATATAGGCTCATCAGGCGCTTCCACAGACCA
TACGCTCCAACATCAGCAGGTAGAAAAACAGGAGTCACACGCGAGGCGCA
CAGCTTTTGCAGTTCATCCTAAAAGCCTGCGCATCTTTGACAAAATTAGA
GCTGCCAAGCATGCGGTCCCGCCAGAAGATTTTTTTGAGACAGCGGGCGC
TATGAATGAAAGCAGAAGCTTTGAAAGAGAGCTTCGATGTTACATCACGA
GCGGCAAGACGCAGCACAACGCACGTATTGGGTATGACACACCCTCCGAT
GAGGAGGAGGAGCCTGATGACTCAATGACAGCCGAGACCGGGGCGCAAGT
CGAAGAAAGTGACACACTCCCGGCCGATGCGAACAGCAGCAGTCATCAAA
ACATCTCCAATGCTGGAAGGTGCAATTGGTTTGGGTTTGATAGTGCTGTG
AGACAGATTACGGGCTTGCCGGGCGCTGTTTGGAACTTGGCAAAATACGT
TGCAGATAGTTTAAATGAACTGACGCGGCGCACATGGAGAGCGGTTAGAT
GTTGGATCTTTCCTTAA
back to top