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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMJ077CT |
| Preferred name | WDR48 |
| PFAMs | DUF3337,WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K15361 |
| KEGG Pathway | ko03460,map03460 |
| GOs | GO:0000003,GO:0000724,GO:0000725,GO:0001501,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007276,GO:0007283,GO:0007338,GO:0007548,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008406,GO:0008584,GO:0009566,GO:0009653,GO:0009790,GO:0009887,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019953,GO:0022414,GO:0030162,GO:0030428,GO:0031323,GO:0031325,GO:0031396,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034641,GO:0035264,GO:0035295,GO:0036211,GO:0036459,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042592,GO:0042769,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045862,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048513,GO:0048518,GO:0048520,GO:0048522,GO:0048568,GO:0048589,GO:0048608,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048872,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051286,GO:0051606,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072520,GO:0080090,GO:0090085,GO:0090304,GO:0090325,GO:0090326,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1902525,GO:1903003,GO:1903320,GO:1903322,GO:1903827,GO:1903829,GO:2000008,GO:2000010 |
| Evalue | 2.08e-104 |
| EggNOG OGs | KOG0308@1|root,KOG0308@2759|Eukaryota |
| Description | regulation of protein monoubiquitination |
| COG category | T |
| BRITE | ko00000,ko00001,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp MVGSAAVDRYPPRRNDRVTYVLRAPEKHHRFGISALALGKQQLITAGRDG TVRSWSLPPTNRLTNKTLSVSKTTISANLTFDEHTDWVNDVLLLSEHDRI VSCSSDTTLKVWAASNSARSLRTLSNHTDYVKALAHVPNGVASGSLDARV LIWDLATGRVRIECNSHNGDNDHCGSVYCMAAAYDENILISGSTNRLISV WDIRTGDRIVSLRGHSDSVRCLAIKSDASQMLSGATDSTVRLWDMRMQRC VRSYDSPSGSSVWAVAALPNFDKFVWGFRDGSVSYTDVNAHSNANMGSTI VPPAETDFRNNMVLDLKLSSCLSSVWVSTTGSSVRLWPLPTDVNRSRPNL ANYVNDRRPTTRSETAPQFPRLEAVYVPLYTIPGLPGIIAHRIMNDKRHV LTCNTDSEFCIWDITQGTLVKSLGILQEDIDEVAKRNDEEVTVPSWFQVD IRLGSLSVRLDRNTVSNAEIYAVDAGLEASSEDIKVNIGEHVLRGLFRKW ITEYKRINPVDDDGGYLQGRSPPTQAQRAAASRVAELPEYRFPGHIPVII TEDRSPLPILRKTVSGFTGTEEESLPSWVVDLVRDGKSQVREAVKLSFTL EPAEGSTLPQLSPTSLHAARVLRVRKVITYIAKELKELQSEQDIEVEPQD LEVLCNGQVLSPTMSLAAVRQFRWRAPEDLQLHFRLKKT* back to topspliced messenger RNA >Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at ScGOVlb_88:1804864..1806933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGGTAGCGCTGCCGTGGACCGCTATCCCCCGCGACGCAATGACCG CGTCACCTACGTTCTACGCGCCCCTGAAAAGCACCATCGCTTCGGAATCT CCGCCCTAGCCCTTGGTAAGCAGCAACTCATAACTGCGGGCCGCGATGGA ACCGTGCGCTCCTGGTCCTTGCCCCCCACAAATCGCCTCACCAACAAGAC TCTGTCCGTCTCCAAAACTACCATCAGCGCCAATCTCACCTTTGACGAGC ACACAGACTGGGTCAACGACGTGCTGCTTTTATCAGAACATGATCGAATT GTGTCATGCTCGTCGGACACTACCCTCAAAGTGTGGGCTGCCTCCAACTC CGCGCGTAGCCTTAGAACCCTTTCCAACCATACCGACTACGTAAAGGCAC TGGCCCACGTCCCAAACGGCGTCGCAAGCGGTTCCCTAGATGCCCGCGTT CTTATCTGGGATCTTGCCACAGGTCGCGTGCGAATTGAATGCAACAGCCA CAATGGGGACAACGATCATTGCGGCTCAGTGTACTGCATGGCTGCCGCCT ACGACGAAAACATTCTGATATCCGGCTCAACCAACCGCCTCATCTCTGTG TGGGACATCCGCACAGGTGATCGAATCGTCAGTTTGCGTGGGCATAGTGA TTCCGTTCGATGTCTCGCGATCAAGTCTGACGCCAGTCAAATGCTCTCTG GCGCCACAGACTCCACAGTTCGGCTCTGGGACATGCGCATGCAGAGATGT GTACGATCTTATGACTCACCATCCGGCAGCAGTGTCTGGGCCGTCGCCGC GCTTCCGAATTTCGACAAGTTTGTCTGGGGCTTTCGCGATGGCTCGGTTT CGTATACAGACGTCAACGCTCATTCCAATGCAAATATGGGGTCTACTATC GTTCCCCCTGCCGAAACAGACTTCAGGAATAATATGGTTCTTGATCTCAA ACTTTCTTCATGCCTCTCCTCCGTGTGGGTTAGTACCACAGGTTCTTCCG TTCGTCTGTGGCCCTTGCCGACGGATGTAAATCGCTCTCGTCCTAACCTT GCTAATTATGTGAATGACCGAAGACCTACTACGCGAAGTGAAACTGCTCC CCAGTTTCCGCGTCTGGAAGCAGTTTACGTGCCACTGTACACTATTCCCG GTCTTCCAGGCATCATTGCGCATCGAATCATGAACGACAAGCGGCATGTC TTGACATGTAACACAGATAGCGAGTTTTGTATTTGGGATATAACCCAGGG TACATTGGTGAAGTCACTCGGTATTCTTCAAGAAGATATTGACGAAGTTG CGAAACGGAACGACGAGGAAGTCACTGTTCCTAGTTGGTTTCAGGTAGAC ATCCGACTAGGTTCGCTTTCCGTCAGGCTGGATAGAAACACCGTATCTAA CGCCGAAATATATGCAGTTGACGCTGGTCTTGAAGCCAGCTCGGAAGATA TCAAGGTCAACATCGGTGAACATGTCTTGCGTGGTCTTTTCCGAAAGTGG ATCACTGAGTACAAACGGATCAATCCAGTTGATGATGACGGCGGGTACCT ACAAGGTCGCAGTCCTCCAACTCAGGCTCAAAGGGCCGCAGCGTCACGAG TCGCTGAATTGCCTGAATACCGCTTTCCGGGCCATATTCCTGTGATAATC ACGGAAGATCGATCGCCGCTCCCCATTTTGCGGAAAACGGTGTCAGGCTT TACTGGTACAGAGGAAGAGTCACTACCATCATGGGTGGTAGACCTTGTCA GAGACGGTAAGAGTCAAGTACGAGAGGCAGTCAAGCTTAGTTTCACATTA GAACCCGCGGAAGGAAGCACGCTACCCCAATTATCGCCAACTTCACTGCA TGCTGCAAGAGTGCTTCGTGTACGAAAGGTGATTACCTATATTGCAAAGG AGTTGAAGGAGCTTCAGTCTGAGCAAGACATTGAAGTTGAGCCACAAGAT TTGGAAGTTCTCTGTAATGGTCAAGTATTGTCCCCCACAATGAGCCTTGC CGCCGTGAGACAGTTCAGATGGCGAGCGCCAGAAGACCTTCAACTTCACT TCAGACTGAAGAAGACATAG back to topprotein sequence of Gvermi6643.t1 >Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=690bp
MVGSAAVDRYPPRRNDRVTYVLRAPEKHHRFGISALALGKQQLITAGRDG TVRSWSLPPTNRLTNKTLSVSKTTISANLTFDEHTDWVNDVLLLSEHDRI VSCSSDTTLKVWAASNSARSLRTLSNHTDYVKALAHVPNGVASGSLDARV LIWDLATGRVRIECNSHNGDNDHCGSVYCMAAAYDENILISGSTNRLISV WDIRTGDRIVSLRGHSDSVRCLAIKSDASQMLSGATDSTVRLWDMRMQRC VRSYDSPSGSSVWAVAALPNFDKFVWGFRDGSVSYTDVNAHSNANMGSTI VPPAETDFRNNMVLDLKLSSCLSSVWVSTTGSSVRLWPLPTDVNRSRPNL ANYVNDRRPTTRSETAPQFPRLEAVYVPLYTIPGLPGIIAHRIMNDKRHV LTCNTDSEFCIWDITQGTLVKSLGILQEDIDEVAKRNDEEVTVPSWFQVD IRLGSLSVRLDRNTVSNAEIYAVDAGLEASSEDIKVNIGEHVLRGLFRKW ITEYKRINPVDDDGGYLQGRSPPTQAQRAAASRVAELPEYRFPGHIPVII TEDRSPLPILRKTVSGFTGTEEESLPSWVVDLVRDGKSQVREAVKLSFTL EPAEGSTLPQLSPTSLHAARVLRVRKVITYIAKELKELQSEQDIEVEPQD LEVLCNGQVLSPTMSLAAVRQFRWRAPEDLQLHFRLKKT* back to topmRNA from alignment at ScGOVlb_88:1804864..1806933+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at ScGOVlb_88:1804864..1806933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGTCGGTAGCGCTGCCGTGGACCGCTATCCCCCGCGACGCAATGACCG
CGTCACCTACGTTCTACGCGCCCCTGAAAAGCACCATCGCTTCGGAATCT
CCGCCCTAGCCCTTGGTAAGCAGCAACTCATAACTGCGGGCCGCGATGGA
ACCGTGCGCTCCTGGTCCTTGCCCCCCACAAATCGCCTCACCAACAAGAC
TCTGTCCGTCTCCAAAACTACCATCAGCGCCAATCTCACCTTTGACGAGC
ACACAGACTGGGTCAACGACGTGCTGCTTTTATCAGAACATGATCGAATT
GTGTCATGCTCGTCGGACACTACCCTCAAAGTGTGGGCTGCCTCCAACTC
CGCGCGTAGCCTTAGAACCCTTTCCAACCATACCGACTACGTAAAGGCAC
TGGCCCACGTCCCAAACGGCGTCGCAAGCGGTTCCCTAGATGCCCGCGTT
CTTATCTGGGATCTTGCCACAGGTCGCGTGCGAATTGAATGCAACAGCCA
CAATGGGGACAACGATCATTGCGGCTCAGTGTACTGCATGGCTGCCGCCT
ACGACGAAAACATTCTGATATCCGGCTCAACCAACCGCCTCATCTCTGTG
TGGGACATCCGCACAGGTGATCGAATCGTCAGTTTGCGTGGGCATAGTGA
TTCCGTTCGATGTCTCGCGATCAAGTCTGACGCCAGTCAAATGCTCTCTG
GCGCCACAGACTCCACAGTTCGGCTCTGGGACATGCGCATGCAGAGATGT
GTACGATCTTATGACTCACCATCCGGCAGCAGTGTCTGGGCCGTCGCCGC
GCTTCCGAATTTCGACAAGTTTGTCTGGGGCTTTCGCGATGGCTCGGTTT
CGTATACAGACGTCAACGCTCATTCCAATGCAAATATGGGGTCTACTATC
GTTCCCCCTGCCGAAACAGACTTCAGGAATAATATGGTTCTTGATCTCAA
ACTTTCTTCATGCCTCTCCTCCGTGTGGGTTAGTACCACAGGTTCTTCCG
TTCGTCTGTGGCCCTTGCCGACGGATGTAAATCGCTCTCGTCCTAACCTT
GCTAATTATGTGAATGACCGAAGACCTACTACGCGAAGTGAAACTGCTCC
CCAGTTTCCGCGTCTGGAAGCAGTTTACGTGCCACTGTACACTATTCCCG
GTCTTCCAGGCATCATTGCGCATCGAATCATGAACGACAAGCGGCATGTC
TTGACATGTAACACAGATAGCGAGTTTTGTATTTGGGATATAACCCAGGG
TACATTGGTGAAGTCACTCGGTATTCTTCAAGAAGATATTGACGAAGTTG
CGAAACGGAACGACGAGGAAGTCACTGTTCCTAGTTGGTTTCAGGTAGAC
ATCCGACTAGGTTCGCTTTCCGTCAGGCTGGATAGAAACACCGTATCTAA
CGCCGAAATATATGCAGTTGACGCTGGTCTTGAAGCCAGCTCGGAAGATA
TCAAGGTCAACATCGGTGAACATGTCTTGCGTGGTCTTTTCCGAAAGTGG
ATCACTGAGTACAAACGGATCAATCCAGTTGATGATGACGGCGGGTACCT
ACAAGGTCGCAGTCCTCCAACTCAGGCTCAAAGGGCCGCAGCGTCACGAG
TCGCTGAATTGCCTGAATACCGCTTTCCGGGCCATATTCCTGTGATAATC
ACGGAAGATCGATCGCCGCTCCCCATTTTGCGGAAAACGGTGTCAGGCTT
TACTGGTACAGAGGAAGAGTCACTACCATCATGGGTGGTAGACCTTGTCA
GAGACGGTAAGAGTCAAGTACGAGAGGCAGTCAAGCTTAGTTTCACATTA
GAACCCGCGGAAGGAAGCACGCTACCCCAATTATCGCCAACTTCACTGCA
TGCTGCAAGAGTGCTTCGTGTACGAAAGGTGATTACCTATATTGCAAAGG
AGTTGAAGGAGCTTCAGTCTGAGCAAGACATTGAAGTTGAGCCACAAGAT
TTGGAAGTTCTCTGTAATGGTCAAGTATTGTCCCCCACAATGAGCCTTGC
CGCCGTGAGACAGTTCAGATGGCGAGCGCCAGAAGACCTTCAACTTCACT
TCAGACTGAAGAAGACATAG back to topCoding sequence (CDS) from alignment at ScGOVlb_88:1804864..1806933+ >Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2070bp|location=Sequence derived from alignment at ScGOVlb_88:1804864..1806933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGTCGGTAGCGCTGCCGTGGACCGCTATCCCCCGCGACGCAATGACCG CGTCACCTACGTTCTACGCGCCCCTGAAAAGCACCATCGCTTCGGAATCT CCGCCCTAGCCCTTGGTAAGCAGCAACTCATAACTGCGGGCCGCGATGGA ACCGTGCGCTCCTGGTCCTTGCCCCCCACAAATCGCCTCACCAACAAGAC TCTGTCCGTCTCCAAAACTACCATCAGCGCCAATCTCACCTTTGACGAGC ACACAGACTGGGTCAACGACGTGCTGCTTTTATCAGAACATGATCGAATT GTGTCATGCTCGTCGGACACTACCCTCAAAGTGTGGGCTGCCTCCAACTC CGCGCGTAGCCTTAGAACCCTTTCCAACCATACCGACTACGTAAAGGCAC TGGCCCACGTCCCAAACGGCGTCGCAAGCGGTTCCCTAGATGCCCGCGTT CTTATCTGGGATCTTGCCACAGGTCGCGTGCGAATTGAATGCAACAGCCA CAATGGGGACAACGATCATTGCGGCTCAGTGTACTGCATGGCTGCCGCCT ACGACGAAAACATTCTGATATCCGGCTCAACCAACCGCCTCATCTCTGTG TGGGACATCCGCACAGGTGATCGAATCGTCAGTTTGCGTGGGCATAGTGA TTCCGTTCGATGTCTCGCGATCAAGTCTGACGCCAGTCAAATGCTCTCTG GCGCCACAGACTCCACAGTTCGGCTCTGGGACATGCGCATGCAGAGATGT GTACGATCTTATGACTCACCATCCGGCAGCAGTGTCTGGGCCGTCGCCGC GCTTCCGAATTTCGACAAGTTTGTCTGGGGCTTTCGCGATGGCTCGGTTT CGTATACAGACGTCAACGCTCATTCCAATGCAAATATGGGGTCTACTATC GTTCCCCCTGCCGAAACAGACTTCAGGAATAATATGGTTCTTGATCTCAA ACTTTCTTCATGCCTCTCCTCCGTGTGGGTTAGTACCACAGGTTCTTCCG TTCGTCTGTGGCCCTTGCCGACGGATGTAAATCGCTCTCGTCCTAACCTT GCTAATTATGTGAATGACCGAAGACCTACTACGCGAAGTGAAACTGCTCC CCAGTTTCCGCGTCTGGAAGCAGTTTACGTGCCACTGTACACTATTCCCG GTCTTCCAGGCATCATTGCGCATCGAATCATGAACGACAAGCGGCATGTC TTGACATGTAACACAGATAGCGAGTTTTGTATTTGGGATATAACCCAGGG TACATTGGTGAAGTCACTCGGTATTCTTCAAGAAGATATTGACGAAGTTG CGAAACGGAACGACGAGGAAGTCACTGTTCCTAGTTGGTTTCAGGTAGAC ATCCGACTAGGTTCGCTTTCCGTCAGGCTGGATAGAAACACCGTATCTAA CGCCGAAATATATGCAGTTGACGCTGGTCTTGAAGCCAGCTCGGAAGATA TCAAGGTCAACATCGGTGAACATGTCTTGCGTGGTCTTTTCCGAAAGTGG ATCACTGAGTACAAACGGATCAATCCAGTTGATGATGACGGCGGGTACCT ACAAGGTCGCAGTCCTCCAACTCAGGCTCAAAGGGCCGCAGCGTCACGAG TCGCTGAATTGCCTGAATACCGCTTTCCGGGCCATATTCCTGTGATAATC ACGGAAGATCGATCGCCGCTCCCCATTTTGCGGAAAACGGTGTCAGGCTT TACTGGTACAGAGGAAGAGTCACTACCATCATGGGTGGTAGACCTTGTCA GAGACGGTAAGAGTCAAGTACGAGAGGCAGTCAAGCTTAGTTTCACATTA GAACCCGCGGAAGGAAGCACGCTACCCCAATTATCGCCAACTTCACTGCA TGCTGCAAGAGTGCTTCGTGTACGAAAGGTGATTACCTATATTGCAAAGG AGTTGAAGGAGCTTCAGTCTGAGCAAGACATTGAAGTTGAGCCACAAGAT TTGGAAGTTCTCTGTAATGGTCAAGTATTGTCCCCCACAATGAGCCTTGC CGCCGTGAGACAGTTCAGATGGCGAGCGCCAGAAGACCTTCAACTTCACT TCAGACTGAAGAAGACATAG back to top
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