Gvermi6643.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6643.t1
Unique NameGvermi6643.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length690
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1804864..1806933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ077CT
Preferred nameWDR48
PFAMsDUF3337,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K15361
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000724,GO:0000725,GO:0001501,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007276,GO:0007283,GO:0007338,GO:0007548,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008406,GO:0008584,GO:0009566,GO:0009653,GO:0009790,GO:0009887,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019953,GO:0022414,GO:0030162,GO:0030428,GO:0031323,GO:0031325,GO:0031396,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034641,GO:0035264,GO:0035295,GO:0036211,GO:0036459,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042592,GO:0042769,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045862,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048513,GO:0048518,GO:0048520,GO:0048522,GO:0048568,GO:0048589,GO:0048608,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048872,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051286,GO:0051606,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072520,GO:0080090,GO:0090085,GO:0090304,GO:0090325,GO:0090326,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1902525,GO:1903003,GO:1903320,GO:1903322,GO:1903827,GO:1903829,GO:2000008,GO:2000010
Evalue2.08e-104
EggNOG OGsKOG0308@1|root,KOG0308@2759|Eukaryota
Descriptionregulation of protein monoubiquitination
COG categoryT
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6643Gvermi6643Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1804864..1806933 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6643.t1.start1Gvermi6643.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1804864..1804866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6643.t1.CDS1Gvermi6643.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1804864..1806933 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6643.t1.exon1Gvermi6643.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1804864..1806933 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6643.t1.stop1Gvermi6643.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1806931..1806933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6643.t1Gvermi6643.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1804864..1806933 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp
MVGSAAVDRYPPRRNDRVTYVLRAPEKHHRFGISALALGKQQLITAGRDG
TVRSWSLPPTNRLTNKTLSVSKTTISANLTFDEHTDWVNDVLLLSEHDRI
VSCSSDTTLKVWAASNSARSLRTLSNHTDYVKALAHVPNGVASGSLDARV
LIWDLATGRVRIECNSHNGDNDHCGSVYCMAAAYDENILISGSTNRLISV
WDIRTGDRIVSLRGHSDSVRCLAIKSDASQMLSGATDSTVRLWDMRMQRC
VRSYDSPSGSSVWAVAALPNFDKFVWGFRDGSVSYTDVNAHSNANMGSTI
VPPAETDFRNNMVLDLKLSSCLSSVWVSTTGSSVRLWPLPTDVNRSRPNL
ANYVNDRRPTTRSETAPQFPRLEAVYVPLYTIPGLPGIIAHRIMNDKRHV
LTCNTDSEFCIWDITQGTLVKSLGILQEDIDEVAKRNDEEVTVPSWFQVD
IRLGSLSVRLDRNTVSNAEIYAVDAGLEASSEDIKVNIGEHVLRGLFRKW
ITEYKRINPVDDDGGYLQGRSPPTQAQRAAASRVAELPEYRFPGHIPVII
TEDRSPLPILRKTVSGFTGTEEESLPSWVVDLVRDGKSQVREAVKLSFTL
EPAEGSTLPQLSPTSLHAARVLRVRKVITYIAKELKELQSEQDIEVEPQD
LEVLCNGQVLSPTMSLAAVRQFRWRAPEDLQLHFRLKKT*
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spliced messenger RNA

>Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at ScGOVlb_88:1804864..1806933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGTAGCGCTGCCGTGGACCGCTATCCCCCGCGACGCAATGACCG
CGTCACCTACGTTCTACGCGCCCCTGAAAAGCACCATCGCTTCGGAATCT
CCGCCCTAGCCCTTGGTAAGCAGCAACTCATAACTGCGGGCCGCGATGGA
ACCGTGCGCTCCTGGTCCTTGCCCCCCACAAATCGCCTCACCAACAAGAC
TCTGTCCGTCTCCAAAACTACCATCAGCGCCAATCTCACCTTTGACGAGC
ACACAGACTGGGTCAACGACGTGCTGCTTTTATCAGAACATGATCGAATT
GTGTCATGCTCGTCGGACACTACCCTCAAAGTGTGGGCTGCCTCCAACTC
CGCGCGTAGCCTTAGAACCCTTTCCAACCATACCGACTACGTAAAGGCAC
TGGCCCACGTCCCAAACGGCGTCGCAAGCGGTTCCCTAGATGCCCGCGTT
CTTATCTGGGATCTTGCCACAGGTCGCGTGCGAATTGAATGCAACAGCCA
CAATGGGGACAACGATCATTGCGGCTCAGTGTACTGCATGGCTGCCGCCT
ACGACGAAAACATTCTGATATCCGGCTCAACCAACCGCCTCATCTCTGTG
TGGGACATCCGCACAGGTGATCGAATCGTCAGTTTGCGTGGGCATAGTGA
TTCCGTTCGATGTCTCGCGATCAAGTCTGACGCCAGTCAAATGCTCTCTG
GCGCCACAGACTCCACAGTTCGGCTCTGGGACATGCGCATGCAGAGATGT
GTACGATCTTATGACTCACCATCCGGCAGCAGTGTCTGGGCCGTCGCCGC
GCTTCCGAATTTCGACAAGTTTGTCTGGGGCTTTCGCGATGGCTCGGTTT
CGTATACAGACGTCAACGCTCATTCCAATGCAAATATGGGGTCTACTATC
GTTCCCCCTGCCGAAACAGACTTCAGGAATAATATGGTTCTTGATCTCAA
ACTTTCTTCATGCCTCTCCTCCGTGTGGGTTAGTACCACAGGTTCTTCCG
TTCGTCTGTGGCCCTTGCCGACGGATGTAAATCGCTCTCGTCCTAACCTT
GCTAATTATGTGAATGACCGAAGACCTACTACGCGAAGTGAAACTGCTCC
CCAGTTTCCGCGTCTGGAAGCAGTTTACGTGCCACTGTACACTATTCCCG
GTCTTCCAGGCATCATTGCGCATCGAATCATGAACGACAAGCGGCATGTC
TTGACATGTAACACAGATAGCGAGTTTTGTATTTGGGATATAACCCAGGG
TACATTGGTGAAGTCACTCGGTATTCTTCAAGAAGATATTGACGAAGTTG
CGAAACGGAACGACGAGGAAGTCACTGTTCCTAGTTGGTTTCAGGTAGAC
ATCCGACTAGGTTCGCTTTCCGTCAGGCTGGATAGAAACACCGTATCTAA
CGCCGAAATATATGCAGTTGACGCTGGTCTTGAAGCCAGCTCGGAAGATA
TCAAGGTCAACATCGGTGAACATGTCTTGCGTGGTCTTTTCCGAAAGTGG
ATCACTGAGTACAAACGGATCAATCCAGTTGATGATGACGGCGGGTACCT
ACAAGGTCGCAGTCCTCCAACTCAGGCTCAAAGGGCCGCAGCGTCACGAG
TCGCTGAATTGCCTGAATACCGCTTTCCGGGCCATATTCCTGTGATAATC
ACGGAAGATCGATCGCCGCTCCCCATTTTGCGGAAAACGGTGTCAGGCTT
TACTGGTACAGAGGAAGAGTCACTACCATCATGGGTGGTAGACCTTGTCA
GAGACGGTAAGAGTCAAGTACGAGAGGCAGTCAAGCTTAGTTTCACATTA
GAACCCGCGGAAGGAAGCACGCTACCCCAATTATCGCCAACTTCACTGCA
TGCTGCAAGAGTGCTTCGTGTACGAAAGGTGATTACCTATATTGCAAAGG
AGTTGAAGGAGCTTCAGTCTGAGCAAGACATTGAAGTTGAGCCACAAGAT
TTGGAAGTTCTCTGTAATGGTCAAGTATTGTCCCCCACAATGAGCCTTGC
CGCCGTGAGACAGTTCAGATGGCGAGCGCCAGAAGACCTTCAACTTCACT
TCAGACTGAAGAAGACATAG
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protein sequence of Gvermi6643.t1

>Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=690bp
MVGSAAVDRYPPRRNDRVTYVLRAPEKHHRFGISALALGKQQLITAGRDG
TVRSWSLPPTNRLTNKTLSVSKTTISANLTFDEHTDWVNDVLLLSEHDRI
VSCSSDTTLKVWAASNSARSLRTLSNHTDYVKALAHVPNGVASGSLDARV
LIWDLATGRVRIECNSHNGDNDHCGSVYCMAAAYDENILISGSTNRLISV
WDIRTGDRIVSLRGHSDSVRCLAIKSDASQMLSGATDSTVRLWDMRMQRC
VRSYDSPSGSSVWAVAALPNFDKFVWGFRDGSVSYTDVNAHSNANMGSTI
VPPAETDFRNNMVLDLKLSSCLSSVWVSTTGSSVRLWPLPTDVNRSRPNL
ANYVNDRRPTTRSETAPQFPRLEAVYVPLYTIPGLPGIIAHRIMNDKRHV
LTCNTDSEFCIWDITQGTLVKSLGILQEDIDEVAKRNDEEVTVPSWFQVD
IRLGSLSVRLDRNTVSNAEIYAVDAGLEASSEDIKVNIGEHVLRGLFRKW
ITEYKRINPVDDDGGYLQGRSPPTQAQRAAASRVAELPEYRFPGHIPVII
TEDRSPLPILRKTVSGFTGTEEESLPSWVVDLVRDGKSQVREAVKLSFTL
EPAEGSTLPQLSPTSLHAARVLRVRKVITYIAKELKELQSEQDIEVEPQD
LEVLCNGQVLSPTMSLAAVRQFRWRAPEDLQLHFRLKKT*
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mRNA from alignment at ScGOVlb_88:1804864..1806933+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at ScGOVlb_88:1804864..1806933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGGTAGCGCTGCCGTGGACCGCTATCCCCCGCGACGCAATGACCG CGTCACCTACGTTCTACGCGCCCCTGAAAAGCACCATCGCTTCGGAATCT CCGCCCTAGCCCTTGGTAAGCAGCAACTCATAACTGCGGGCCGCGATGGA ACCGTGCGCTCCTGGTCCTTGCCCCCCACAAATCGCCTCACCAACAAGAC TCTGTCCGTCTCCAAAACTACCATCAGCGCCAATCTCACCTTTGACGAGC ACACAGACTGGGTCAACGACGTGCTGCTTTTATCAGAACATGATCGAATT GTGTCATGCTCGTCGGACACTACCCTCAAAGTGTGGGCTGCCTCCAACTC CGCGCGTAGCCTTAGAACCCTTTCCAACCATACCGACTACGTAAAGGCAC TGGCCCACGTCCCAAACGGCGTCGCAAGCGGTTCCCTAGATGCCCGCGTT CTTATCTGGGATCTTGCCACAGGTCGCGTGCGAATTGAATGCAACAGCCA CAATGGGGACAACGATCATTGCGGCTCAGTGTACTGCATGGCTGCCGCCT ACGACGAAAACATTCTGATATCCGGCTCAACCAACCGCCTCATCTCTGTG TGGGACATCCGCACAGGTGATCGAATCGTCAGTTTGCGTGGGCATAGTGA TTCCGTTCGATGTCTCGCGATCAAGTCTGACGCCAGTCAAATGCTCTCTG GCGCCACAGACTCCACAGTTCGGCTCTGGGACATGCGCATGCAGAGATGT GTACGATCTTATGACTCACCATCCGGCAGCAGTGTCTGGGCCGTCGCCGC GCTTCCGAATTTCGACAAGTTTGTCTGGGGCTTTCGCGATGGCTCGGTTT CGTATACAGACGTCAACGCTCATTCCAATGCAAATATGGGGTCTACTATC GTTCCCCCTGCCGAAACAGACTTCAGGAATAATATGGTTCTTGATCTCAA ACTTTCTTCATGCCTCTCCTCCGTGTGGGTTAGTACCACAGGTTCTTCCG TTCGTCTGTGGCCCTTGCCGACGGATGTAAATCGCTCTCGTCCTAACCTT GCTAATTATGTGAATGACCGAAGACCTACTACGCGAAGTGAAACTGCTCC CCAGTTTCCGCGTCTGGAAGCAGTTTACGTGCCACTGTACACTATTCCCG GTCTTCCAGGCATCATTGCGCATCGAATCATGAACGACAAGCGGCATGTC TTGACATGTAACACAGATAGCGAGTTTTGTATTTGGGATATAACCCAGGG TACATTGGTGAAGTCACTCGGTATTCTTCAAGAAGATATTGACGAAGTTG CGAAACGGAACGACGAGGAAGTCACTGTTCCTAGTTGGTTTCAGGTAGAC ATCCGACTAGGTTCGCTTTCCGTCAGGCTGGATAGAAACACCGTATCTAA CGCCGAAATATATGCAGTTGACGCTGGTCTTGAAGCCAGCTCGGAAGATA TCAAGGTCAACATCGGTGAACATGTCTTGCGTGGTCTTTTCCGAAAGTGG ATCACTGAGTACAAACGGATCAATCCAGTTGATGATGACGGCGGGTACCT ACAAGGTCGCAGTCCTCCAACTCAGGCTCAAAGGGCCGCAGCGTCACGAG TCGCTGAATTGCCTGAATACCGCTTTCCGGGCCATATTCCTGTGATAATC ACGGAAGATCGATCGCCGCTCCCCATTTTGCGGAAAACGGTGTCAGGCTT TACTGGTACAGAGGAAGAGTCACTACCATCATGGGTGGTAGACCTTGTCA GAGACGGTAAGAGTCAAGTACGAGAGGCAGTCAAGCTTAGTTTCACATTA GAACCCGCGGAAGGAAGCACGCTACCCCAATTATCGCCAACTTCACTGCA TGCTGCAAGAGTGCTTCGTGTACGAAAGGTGATTACCTATATTGCAAAGG AGTTGAAGGAGCTTCAGTCTGAGCAAGACATTGAAGTTGAGCCACAAGAT TTGGAAGTTCTCTGTAATGGTCAAGTATTGTCCCCCACAATGAGCCTTGC CGCCGTGAGACAGTTCAGATGGCGAGCGCCAGAAGACCTTCAACTTCACT TCAGACTGAAGAAGACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:1804864..1806933+

>Gvermi6643.t1 ID=Gvermi6643.t1|Name=Gvermi6643.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2070bp|location=Sequence derived from alignment at ScGOVlb_88:1804864..1806933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGGTAGCGCTGCCGTGGACCGCTATCCCCCGCGACGCAATGACCG
CGTCACCTACGTTCTACGCGCCCCTGAAAAGCACCATCGCTTCGGAATCT
CCGCCCTAGCCCTTGGTAAGCAGCAACTCATAACTGCGGGCCGCGATGGA
ACCGTGCGCTCCTGGTCCTTGCCCCCCACAAATCGCCTCACCAACAAGAC
TCTGTCCGTCTCCAAAACTACCATCAGCGCCAATCTCACCTTTGACGAGC
ACACAGACTGGGTCAACGACGTGCTGCTTTTATCAGAACATGATCGAATT
GTGTCATGCTCGTCGGACACTACCCTCAAAGTGTGGGCTGCCTCCAACTC
CGCGCGTAGCCTTAGAACCCTTTCCAACCATACCGACTACGTAAAGGCAC
TGGCCCACGTCCCAAACGGCGTCGCAAGCGGTTCCCTAGATGCCCGCGTT
CTTATCTGGGATCTTGCCACAGGTCGCGTGCGAATTGAATGCAACAGCCA
CAATGGGGACAACGATCATTGCGGCTCAGTGTACTGCATGGCTGCCGCCT
ACGACGAAAACATTCTGATATCCGGCTCAACCAACCGCCTCATCTCTGTG
TGGGACATCCGCACAGGTGATCGAATCGTCAGTTTGCGTGGGCATAGTGA
TTCCGTTCGATGTCTCGCGATCAAGTCTGACGCCAGTCAAATGCTCTCTG
GCGCCACAGACTCCACAGTTCGGCTCTGGGACATGCGCATGCAGAGATGT
GTACGATCTTATGACTCACCATCCGGCAGCAGTGTCTGGGCCGTCGCCGC
GCTTCCGAATTTCGACAAGTTTGTCTGGGGCTTTCGCGATGGCTCGGTTT
CGTATACAGACGTCAACGCTCATTCCAATGCAAATATGGGGTCTACTATC
GTTCCCCCTGCCGAAACAGACTTCAGGAATAATATGGTTCTTGATCTCAA
ACTTTCTTCATGCCTCTCCTCCGTGTGGGTTAGTACCACAGGTTCTTCCG
TTCGTCTGTGGCCCTTGCCGACGGATGTAAATCGCTCTCGTCCTAACCTT
GCTAATTATGTGAATGACCGAAGACCTACTACGCGAAGTGAAACTGCTCC
CCAGTTTCCGCGTCTGGAAGCAGTTTACGTGCCACTGTACACTATTCCCG
GTCTTCCAGGCATCATTGCGCATCGAATCATGAACGACAAGCGGCATGTC
TTGACATGTAACACAGATAGCGAGTTTTGTATTTGGGATATAACCCAGGG
TACATTGGTGAAGTCACTCGGTATTCTTCAAGAAGATATTGACGAAGTTG
CGAAACGGAACGACGAGGAAGTCACTGTTCCTAGTTGGTTTCAGGTAGAC
ATCCGACTAGGTTCGCTTTCCGTCAGGCTGGATAGAAACACCGTATCTAA
CGCCGAAATATATGCAGTTGACGCTGGTCTTGAAGCCAGCTCGGAAGATA
TCAAGGTCAACATCGGTGAACATGTCTTGCGTGGTCTTTTCCGAAAGTGG
ATCACTGAGTACAAACGGATCAATCCAGTTGATGATGACGGCGGGTACCT
ACAAGGTCGCAGTCCTCCAACTCAGGCTCAAAGGGCCGCAGCGTCACGAG
TCGCTGAATTGCCTGAATACCGCTTTCCGGGCCATATTCCTGTGATAATC
ACGGAAGATCGATCGCCGCTCCCCATTTTGCGGAAAACGGTGTCAGGCTT
TACTGGTACAGAGGAAGAGTCACTACCATCATGGGTGGTAGACCTTGTCA
GAGACGGTAAGAGTCAAGTACGAGAGGCAGTCAAGCTTAGTTTCACATTA
GAACCCGCGGAAGGAAGCACGCTACCCCAATTATCGCCAACTTCACTGCA
TGCTGCAAGAGTGCTTCGTGTACGAAAGGTGATTACCTATATTGCAAAGG
AGTTGAAGGAGCTTCAGTCTGAGCAAGACATTGAAGTTGAGCCACAAGAT
TTGGAAGTTCTCTGTAATGGTCAAGTATTGTCCCCCACAATGAGCCTTGC
CGCCGTGAGACAGTTCAGATGGCGAGCGCCAGAAGACCTTCAACTTCACT
TCAGACTGAAGAAGACATAG
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