Gvermi6787.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6787.t1
Unique NameGvermi6787.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2280185..2280798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707278.1
Preferred nameNdufS4
PFAMsETC_C1_NDUFA4
Max annot lvl2759|Eukaryota
KEGG koko:K03937,ko:K13174
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03013,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143,M00405,M00406
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009409,GO:0009628,GO:0009631,GO:0009987,GO:0010876,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019915,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0034641,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0050897,GO:0051179,GO:0051235,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue5.91e-48
EggNOG OGsKOG3389@1|root,KOG3389@2759|Eukaryota
Descriptionoxidoreductase activity, acting on NAD(P)H
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6787Gvermi6787Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2280185..2280798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1Gvermi6787.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2280185..2280798 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1.start1Gvermi6787.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2280185..2280187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1.CDS1Gvermi6787.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2280185..2280336 +
Gvermi6787.t1.CDS2Gvermi6787.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2280417..2280513 +
Gvermi6787.t1.CDS3Gvermi6787.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2280583..2280798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1.exon1Gvermi6787.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2280185..2280336 +
Gvermi6787.t1.exon2Gvermi6787.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2280417..2280513 +
Gvermi6787.t1.exon3Gvermi6787.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2280583..2280798 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1.intron1Gvermi6787.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2280337..2280416 +
Gvermi6787.t1.intron2Gvermi6787.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2280514..2280582 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6787.t1.stop1Gvermi6787.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2280796..2280798 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6787.t1 ID=Gvermi6787.t1|Name=Gvermi6787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=155bp
MSSSQWMRTVGRLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPA
KVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFP
SKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY
DSDK*
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spliced messenger RNA

>Gvermi6787.t1 ID=Gvermi6787.t1|Name=Gvermi6787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=465bp|location=Sequence derived from alignment at ScGOVlb_88:2280185..2280798+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTCACAATGGATGAGAACTGTTGGTCGATTGGCTCCTCGAAC
TTCCCGCATGTTTTCAACAAACCCGGATCATACGATTAATGTATTATCCG
GCATTCCAGAGAAGCATGCGATGAGGCGCGTACGTATCTACAGACCAGCA
AAAGTTGCAACTCAGCAAGGCCGTGGAAGCTTGACGCAGATGTGGAAAAT
GTCATTTGAAAAGCTCGAGGGCGATGACCGGTGGACCAACCCCCTAATGG
GATGGACTAGTACTGGCGACCCACTCTCTAACATGGGAATGTCTTTCCCA
AGCAAAGAAGCTGCAATGCATTATGCAGAACGTAATGGGTACGAATTTAG
TGTTGTGGAGCCCGCCGAAGAGAAGCAACATGTGAAGCCGATTGCACCTT
TTAAGCGCTCTATGGTGCACCACTGGCGCCACAGTGGCACACCGGTCTAC
GACAGTGATAAGTAG
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protein sequence of Gvermi6787.t1

>Gvermi6787.t1 ID=Gvermi6787.t1|Name=Gvermi6787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=155bp
MSSSQWMRTVGRLAPRTSRMFSTNPDHTINVLSGIPEKHAMRRVRIYRPA
KVATQQGRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFP
SKEAAMHYAERNGYEFSVVEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVY
DSDK*
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mRNA from alignment at ScGOVlb_88:2280185..2280798+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6787.t1 ID=Gvermi6787.t1|Name=Gvermi6787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=614bp|location=Sequence derived from alignment at ScGOVlb_88:2280185..2280798+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCTTCACAATGGATGAGAACTGTTGGTCGATTGGCTCCTCGAAC
TTCCCGCATGTTTTCAACAAACCCGGATCATACGATTAATGTATTATCCG
GCATTCCAGAGAAGCATGCGATGAGGCGCGTACGTATCTACAGACCAGCA
AAGTAAGTCTGAGAACTTTAAAGAAATTCCATCACGCGCTCCTAAACCCT
TCTAACAAGATATGTCACTTATGGCATTTCAGAGTTGCAACTCAGCAAGG
CCGTGGAAGCTTGACGCAGATGTGGAAAATGTCATTTGAAAAGCTCGAGG
GCGATGACCGGTGGACCAACCCCCTAATGGTACGTGAAAGTCAATATTAA
GTTCAGCGTAGGTGACATTGAACTAACTTGTGGCATATCAAATCGAAGGG
ATGGACTAGTACTGGCGACCCACTCTCTAACATGGGAATGTCTTTCCCAA
GCAAAGAAGCTGCAATGCATTATGCAGAACGTAATGGGTACGAATTTAGT
GTTGTGGAGCCCGCCGAAGAGAAGCAACATGTGAAGCCGATTGCACCTTT
TAAGCGCTCTATGGTGCACCACTGGCGCCACAGTGGCACACCGGTCTACG
ACAGTGATAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2280185..2280798+

>Gvermi6787.t1 ID=Gvermi6787.t1|Name=Gvermi6787.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=465bp|location=Sequence derived from alignment at ScGOVlb_88:2280185..2280798+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCTTCACAATGGATGAGAACTGTTGGTCGATTGGCTCCTCGAAC
TTCCCGCATGTTTTCAACAAACCCGGATCATACGATTAATGTATTATCCG
GCATTCCAGAGAAGCATGCGATGAGGCGCGTACGTATCTACAGACCAGCA
AAAGTTGCAACTCAGCAAGGCCGTGGAAGCTTGACGCAGATGTGGAAAAT
GTCATTTGAAAAGCTCGAGGGCGATGACCGGTGGACCAACCCCCTAATGG
GATGGACTAGTACTGGCGACCCACTCTCTAACATGGGAATGTCTTTCCCA
AGCAAAGAAGCTGCAATGCATTATGCAGAACGTAATGGGTACGAATTTAG
TGTTGTGGAGCCCGCCGAAGAGAAGCAACATGTGAAGCCGATTGCACCTT
TTAAGCGCTCTATGGTGCACCACTGGCGCCACAGTGGCACACCGGTCTAC
GACAGTGATAAGTAG
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