Gvermi2363.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2363.t1
Unique NameGvermi2363.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length572
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_839contigScGOVlb_839:31..2173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr45081
PFAMsABC1
Max annot lvl2836|Bacillariophyta
Evalue1.02e-149
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota,2XB5S@2836|Bacillariophyta
DescriptionABC1 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2363Gvermi2363Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_839 31..2173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2363.t1Gvermi2363.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_839 31..2173 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2363.t1.stop1Gvermi2363.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_839 31..33 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2363.t1.CDS1Gvermi2363.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_839 31..287 -
Gvermi2363.t1.CDS2Gvermi2363.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_839 715..2173 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2363.t1.exon1Gvermi2363.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_839 31..287 -
Gvermi2363.t1.exon2Gvermi2363.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_839 715..2173 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2363.t1.intron1Gvermi2363.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_839 288..714 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2363.t1.start1Gvermi2363.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_839 2171..2173 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2363.t1 ID=Gvermi2363.t1|Name=Gvermi2363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=572bp
MLLDAVLTRQRQAKDATSEWGRYARHPSARARSIVSLLLVKLLPIYLATV
PCGSIAKRRRSRSNTAASSTTTTAAAAAKLRLQKYAGNVLADTLLRLGPL
YIKIGQIVSCRSELLPAPTRAALERLQDEVPAQSGAAAQELAHAAWPAGP
ADFDATFDRVQWTPLAAASLGQVHAAELRSSGEPVALKLQRPFLREIYDA
DLALLSKIASSVDRFFSATATATATISSSGSSNGSSKSKRGTVGGVPQSW
TAIFADARENLYRAIDYRAEADNAVRFCRDFGLDKKGAAAPAAAVSRDGK
PLASAASWLRTPYVYADLSSEKVLVMECVPSIKITAAEKLDAANVTKADR
EYLADCLGRSYIRQFCCNKFFSTDPHAGNLGVELLLDNMDSSSNNNAAVV
SDPAKRVRLVYYDFGQAAELQQNQADGILDMIEAIVDMDVDRSIESFQTM
GVLNEGADLAAVRSKVADNYRTGKVKATRKKLTSYSPTVEAAYKDFLSGE
SVSESGDEDGADAFSVDPETVDTDKLEGRNPSARLASLRVTTTRSSSDES
SDGDSVEASSPEWEDILMSLT*
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spliced messenger RNA

>Gvermi2363.t1 ID=Gvermi2363.t1|Name=Gvermi2363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at ScGOVlb_839:31..2173- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTGGATGCTGTGCTCACGAGGCAACGCCAAGCCAAGGACGCCAC
GTCGGAGTGGGGACGCTACGCCCGACACCCCAGCGCTAGAGCAAGGTCGA
TTGTCAGCTTGCTCCTTGTCAAGTTGCTGCCAATCTACTTGGCCACTGTC
CCTTGTGGCAGCATTGCAAAGAGGAGACGGAGCCGCAGCAATACAGCTGC
TAGTAGTACTACTACTACTGCAGCCGCAGCCGCCAAGCTGCGACTGCAGA
AATACGCCGGCAACGTGCTCGCCGACACGCTGCTTCGATTGGGCCCGCTC
TACATTAAAATTGGCCAAATTGTGTCGTGCCGCAGCGAACTGCTGCCTGC
TCCAACCAGGGCGGCGCTGGAGCGATTGCAGGATGAGGTACCGGCGCAGT
CGGGCGCAGCCGCGCAGGAGCTCGCGCACGCGGCGTGGCCCGCCGGTCCA
GCCGACTTTGACGCCACGTTTGACAGGGTGCAGTGGACGCCCCTGGCAGC
CGCGAGCCTGGGGCAGGTGCACGCGGCCGAACTGCGGTCCAGCGGCGAAC
CCGTGGCGCTCAAGCTGCAGCGACCCTTTTTGCGGGAAATTTACGACGCG
GATTTGGCGCTGCTGTCCAAAATTGCCAGCAGCGTGGATCGCTTCTTTTC
AGCGACAGCGACAGCAACAGCAACGATTAGTAGCAGTGGTAGCAGCAACG
GCAGCAGCAAGTCGAAAAGGGGGACCGTTGGTGGCGTGCCACAGAGCTGG
ACGGCCATTTTTGCCGACGCCAGGGAGAATTTGTACCGCGCAATTGATTA
CCGCGCCGAAGCGGACAACGCTGTGCGCTTTTGCCGCGACTTTGGTCTCG
ACAAGAAAGGTGCTGCCGCACCAGCAGCCGCGGTATCGCGCGACGGCAAG
CCTCTGGCAAGCGCCGCCTCGTGGCTCCGCACGCCGTACGTGTACGCTGA
CCTTTCGTCGGAAAAGGTGCTCGTCATGGAGTGCGTGCCCAGCATCAAAA
TTACCGCTGCAGAAAAGCTAGACGCCGCCAATGTCACTAAGGCCGATCGC
GAGTACCTGGCCGACTGCCTCGGTCGATCGTACATTCGCCAGTTTTGCTG
CAACAAGTTCTTTTCCACTGACCCGCACGCTGGCAATCTTGGCGTCGAGT
TGCTGCTCGACAACATGGACAGCAGCAGCAACAATAATGCGGCTGTTGTT
TCTGATCCGGCCAAGCGCGTTCGGTTGGTGTACTACGATTTTGGGCAGGC
AGCCGAGCTGCAGCAGAACCAAGCGGACGGTATCCTGGACATGATCGAGG
CCATTGTGGATATGGATGTGGATCGATCGATTGAATCCTTTCAAACCATG
GGAGTCTTGAACGAAGGAGCGGATTTAGCAGCGGTGCGATCCAAAGTCGC
CGACAACTATCGCACTGGGAAGGTCAAGGCGACGCGCAAAAAGTTGACAA
GTTACAGCCCTACCGTGGAGGCGGCGTACAAGGATTTCCTGTCGGGCGAG
TCCGTGAGCGAAAGCGGCGATGAGGACGGCGCTGATGCATTTTCGGTGGA
TCCCGAGACGGTGGATACGGACAAGCTCGAGGGGCGGAACCCGTCTGCGC
GATTGGCGAGCCTAAGAGTGACCACCACTCGCTCGTCTAGCGATGAGTCG
AGCGATGGCGACTCGGTGGAGGCATCTAGCCCGGAGTGGGAGGACATTTT
GATGAGCTTGACCTGA
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protein sequence of Gvermi2363.t1

>Gvermi2363.t1 ID=Gvermi2363.t1|Name=Gvermi2363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=572bp
MLLDAVLTRQRQAKDATSEWGRYARHPSARARSIVSLLLVKLLPIYLATV
PCGSIAKRRRSRSNTAASSTTTTAAAAAKLRLQKYAGNVLADTLLRLGPL
YIKIGQIVSCRSELLPAPTRAALERLQDEVPAQSGAAAQELAHAAWPAGP
ADFDATFDRVQWTPLAAASLGQVHAAELRSSGEPVALKLQRPFLREIYDA
DLALLSKIASSVDRFFSATATATATISSSGSSNGSSKSKRGTVGGVPQSW
TAIFADARENLYRAIDYRAEADNAVRFCRDFGLDKKGAAAPAAAVSRDGK
PLASAASWLRTPYVYADLSSEKVLVMECVPSIKITAAEKLDAANVTKADR
EYLADCLGRSYIRQFCCNKFFSTDPHAGNLGVELLLDNMDSSSNNNAAVV
SDPAKRVRLVYYDFGQAAELQQNQADGILDMIEAIVDMDVDRSIESFQTM
GVLNEGADLAAVRSKVADNYRTGKVKATRKKLTSYSPTVEAAYKDFLSGE
SVSESGDEDGADAFSVDPETVDTDKLEGRNPSARLASLRVTTTRSSSDES
SDGDSVEASSPEWEDILMSLT*
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mRNA from alignment at ScGOVlb_839:31..2173-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2363.t1 ID=Gvermi2363.t1|Name=Gvermi2363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2143bp|location=Sequence derived from alignment at ScGOVlb_839:31..2173- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGTTGGATGCTGTGCTCACGAGGCAACGCCAAGCCAAGGACGCCAC
GTCGGAGTGGGGACGCTACGCCCGACACCCCAGCGCTAGAGCAAGGTCGA
TTGTCAGCTTGCTCCTTGTCAAGTTGCTGCCAATCTACTTGGCCACTGTC
CCTTGTGGCAGCATTGCAAAGAGGAGACGGAGCCGCAGCAATACAGCTGC
TAGTAGTACTACTACTACTGCAGCCGCAGCCGCCAAGCTGCGACTGCAGA
AATACGCCGGCAACGTGCTCGCCGACACGCTGCTTCGATTGGGCCCGCTC
TACATTAAAATTGGCCAAATTGTGTCGTGCCGCAGCGAACTGCTGCCTGC
TCCAACCAGGGCGGCGCTGGAGCGATTGCAGGATGAGGTACCGGCGCAGT
CGGGCGCAGCCGCGCAGGAGCTCGCGCACGCGGCGTGGCCCGCCGGTCCA
GCCGACTTTGACGCCACGTTTGACAGGGTGCAGTGGACGCCCCTGGCAGC
CGCGAGCCTGGGGCAGGTGCACGCGGCCGAACTGCGGTCCAGCGGCGAAC
CCGTGGCGCTCAAGCTGCAGCGACCCTTTTTGCGGGAAATTTACGACGCG
GATTTGGCGCTGCTGTCCAAAATTGCCAGCAGCGTGGATCGCTTCTTTTC
AGCGACAGCGACAGCAACAGCAACGATTAGTAGCAGTGGTAGCAGCAACG
GCAGCAGCAAGTCGAAAAGGGGGACCGTTGGTGGCGTGCCACAGAGCTGG
ACGGCCATTTTTGCCGACGCCAGGGAGAATTTGTACCGCGCAATTGATTA
CCGCGCCGAAGCGGACAACGCTGTGCGCTTTTGCCGCGACTTTGGTCTCG
ACAAGAAAGGTGCTGCCGCACCAGCAGCCGCGGTATCGCGCGACGGCAAG
CCTCTGGCAAGCGCCGCCTCGTGGCTCCGCACGCCGTACGTGTACGCTGA
CCTTTCGTCGGAAAAGGTGCTCGTCATGGAGTGCGTGCCCAGCATCAAAA
TTACCGCTGCAGAAAAGCTAGACGCCGCCAATGTCACTAAGGCCGATCGC
GAGTACCTGGCCGACTGCCTCGGTCGATCGTACATTCGCCAGTTTTGCTG
CAACAAGTTCTTTTCCACTGACCCGCACGCTGGCAATCTTGGCGTCGAGT
TGCTGCTCGACAACATGGACAGCAGCAGCAACAATAATGCGGCTGTTGTT
TCTGATCCGGCCAAGCGCGTTCGGTTGGTGTACTACGATTTTGGGCAGGC
AGCCGAGCTGCAGCAGAACCAAGCGGACGGTATCCTGGACATGATCGAGG
CCATTGTGGATATGGATGTGGATCGATCGATTGAATCCTTTCAAACCATG
GGAGTCTTGAACGAAGGAGCGGATTTAGCAGCGGTGCGATCCAAAGTCGC
CGACAACTATCGCACTGGGAAGGTCAAGGCGACGCGCAAAAAGTTGACAA
GTTACAGCCGTCTTCCGAGCCGTTGAGATTTCTGATGACGATGCAGCTCC
TGCCGCCCTTTGAGTGGGGCCAGGTGAACATTCGTTTGTGGTCGGTCACG
GAGGATGGCTGCTGCGGGCGAATCGGATCGGGCGAACCGGTAAAAACTTG
TGCGCGGCCCAAGACAATGTGTTCTGTGGCTTCCCACAAGAAGGCCTACT
TCGACGGCGCCAAGAGCCCTGGCTGGCGGATTGCTGTGGGAAAGCAAGAA
GCTGGAGGAAGGAGTTCTCCTTTCACCCGTGTTTCCTCCCGTGGAGGATG
GCAGACCGATCTTGGACGAAATTATTGAGCGGCCGAGTGACCCCACACAT
ACCTTCATGCTTTCGCGTGGGCAATGGAAGCACCTGGCCGAGTTGATGTT
GCTTGGTGATCCCAGTAGTGAGTCACTGTCCCCTAGCTACCGTGGAGGCG
GCGTACAAGGATTTCCTGTCGGGCGAGTCCGTGAGCGAAAGCGGCGATGA
GGACGGCGCTGATGCATTTTCGGTGGATCCCGAGACGGTGGATACGGACA
AGCTCGAGGGGCGGAACCCGTCTGCGCGATTGGCGAGCCTAAGAGTGACC
ACCACTCGCTCGTCTAGCGATGAGTCGAGCGATGGCGACTCGGTGGAGGC
ATCTAGCCCGGAGTGGGAGGACATTTTGATGAGCTTGACCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_839:31..2173-

>Gvermi2363.t1 ID=Gvermi2363.t1|Name=Gvermi2363.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1716bp|location=Sequence derived from alignment at ScGOVlb_839:31..2173- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGTTGGATGCTGTGCTCACGAGGCAACGCCAAGCCAAGGACGCCAC
GTCGGAGTGGGGACGCTACGCCCGACACCCCAGCGCTAGAGCAAGGTCGA
TTGTCAGCTTGCTCCTTGTCAAGTTGCTGCCAATCTACTTGGCCACTGTC
CCTTGTGGCAGCATTGCAAAGAGGAGACGGAGCCGCAGCAATACAGCTGC
TAGTAGTACTACTACTACTGCAGCCGCAGCCGCCAAGCTGCGACTGCAGA
AATACGCCGGCAACGTGCTCGCCGACACGCTGCTTCGATTGGGCCCGCTC
TACATTAAAATTGGCCAAATTGTGTCGTGCCGCAGCGAACTGCTGCCTGC
TCCAACCAGGGCGGCGCTGGAGCGATTGCAGGATGAGGTACCGGCGCAGT
CGGGCGCAGCCGCGCAGGAGCTCGCGCACGCGGCGTGGCCCGCCGGTCCA
GCCGACTTTGACGCCACGTTTGACAGGGTGCAGTGGACGCCCCTGGCAGC
CGCGAGCCTGGGGCAGGTGCACGCGGCCGAACTGCGGTCCAGCGGCGAAC
CCGTGGCGCTCAAGCTGCAGCGACCCTTTTTGCGGGAAATTTACGACGCG
GATTTGGCGCTGCTGTCCAAAATTGCCAGCAGCGTGGATCGCTTCTTTTC
AGCGACAGCGACAGCAACAGCAACGATTAGTAGCAGTGGTAGCAGCAACG
GCAGCAGCAAGTCGAAAAGGGGGACCGTTGGTGGCGTGCCACAGAGCTGG
ACGGCCATTTTTGCCGACGCCAGGGAGAATTTGTACCGCGCAATTGATTA
CCGCGCCGAAGCGGACAACGCTGTGCGCTTTTGCCGCGACTTTGGTCTCG
ACAAGAAAGGTGCTGCCGCACCAGCAGCCGCGGTATCGCGCGACGGCAAG
CCTCTGGCAAGCGCCGCCTCGTGGCTCCGCACGCCGTACGTGTACGCTGA
CCTTTCGTCGGAAAAGGTGCTCGTCATGGAGTGCGTGCCCAGCATCAAAA
TTACCGCTGCAGAAAAGCTAGACGCCGCCAATGTCACTAAGGCCGATCGC
GAGTACCTGGCCGACTGCCTCGGTCGATCGTACATTCGCCAGTTTTGCTG
CAACAAGTTCTTTTCCACTGACCCGCACGCTGGCAATCTTGGCGTCGAGT
TGCTGCTCGACAACATGGACAGCAGCAGCAACAATAATGCGGCTGTTGTT
TCTGATCCGGCCAAGCGCGTTCGGTTGGTGTACTACGATTTTGGGCAGGC
AGCCGAGCTGCAGCAGAACCAAGCGGACGGTATCCTGGACATGATCGAGG
CCATTGTGGATATGGATGTGGATCGATCGATTGAATCCTTTCAAACCATG
GGAGTCTTGAACGAAGGAGCGGATTTAGCAGCGGTGCGATCCAAAGTCGC
CGACAACTATCGCACTGGGAAGGTCAAGGCGACGCGCAAAAAGTTGACAA
GTTACAGCCCTACCGTGGAGGCGGCGTACAAGGATTTCCTGTCGGGCGAG
TCCGTGAGCGAAAGCGGCGATGAGGACGGCGCTGATGCATTTTCGGTGGA
TCCCGAGACGGTGGATACGGACAAGCTCGAGGGGCGGAACCCGTCTGCGC
GATTGGCGAGCCTAAGAGTGACCACCACTCGCTCGTCTAGCGATGAGTCG
AGCGATGGCGACTCGGTGGAGGCATCTAGCCCGGAGTGGGAGGACATTTT
GATGAGCTTGACCTGA
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